FFCP PHASE1:Hg19::chr7:119913285..119913298,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3751|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6238|TSSclassifier=W|UniProt=Q9NZV8,A4D0V9|association_with_transcript=-423bp_to_ENST00000331113,NM_012281,uc003vjj.1_5end|coexpression_cluster_id=C15|description=CAGE_peak_4_at_KCND2_5end|id=chr7:119913285..119913298,+|ontology_enrichment_celltype=CL:1000306!4.51e-07!4;CL:0002547!4.51e-07!4|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;2.30e-30;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.61e-33!57;UBERON:0005068!1.61e-33!57;UBERON:0006241!1.61e-33!57;UBERON:0007135!1.61e-33!57;UBERON:0002616!5.33e-32!59;UBERON:0000955!1.10e-26!69;UBERON:0006238!1.10e-26!69;UBERON:0001017!3.19e-25!82;UBERON:0002780!8.34e-24!41;UBERON:0001890!8.34e-24!41;UBERON:0006240!8.34e-24!41;UBERON:0005743!1.68e-23!86;UBERON:0003080!4.67e-23!42;UBERON:0000073!3.60e-20!94;UBERON:0001016!3.60e-20!94;UBERON:0003075!7.12e-20!86;UBERON:0007284!7.12e-20!86;UBERON:0007023!2.66e-19!115;UBERON:0002020!6.05e-19!34;UBERON:0003528!6.05e-19!34;UBERON:0002346!1.69e-18!90;UBERON:0001893!2.10e-18!34;UBERON:0002791!3.37e-17!33;UBERON:0001869!3.96e-16!32;UBERON:0003056!1.54e-13!61;UBERON:0000033!7.56e-13!123;UBERON:0000153!1.45e-12!129;UBERON:0007811!1.45e-12!129;UBERON:0002308!1.64e-12!9;UBERON:0000125!1.64e-12!9;UBERON:0004733!2.88e-12!12;UBERON:0002028!2.88e-12!12;UBERON:0007277!2.88e-12!12;UBERON:0003076!1.30e-11!15;UBERON:0003057!1.30e-11!15;UBERON:0002619!1.44e-11!22;UBERON:0002298!1.93e-11!8;UBERON:0004732!3.76e-11!13;UBERON:0001950!4.64e-11!20;UBERON:0000956!8.00e-10!25;UBERON:0000203!8.00e-10!25;UBERON:0009663!4.44e-09!7;UBERON:0002420!5.46e-09!9;UBERON:0007245!5.46e-09!9;UBERON:0010009!5.46e-09!9;UBERON:0010011!5.46e-09!9;UBERON:0000454!5.46e-09!9;UBERON:0000025!9.38e-09!194;UBERON:0004121!2.10e-08!169;UBERON:0000924!5.69e-08!173;UBERON:0006601!5.69e-08!173;UBERON:0002680!6.29e-08!9;UBERON:0001895!6.29e-08!9;UBERON:0010092!6.29e-08!9;UBERON:0001871!2.47e-07!7;UBERON:0000200!3.72e-07!6;UBERON:0000415!4.51e-07!4;UBERON:0007240!4.51e-07!4;UBERON:0005742!4.51e-07!4;UBERON:0005734!4.51e-07!4;UBERON:0004664!4.51e-07!4;UBERON:0004663!4.51e-07!4;UBERON:0000988!4.61e-07!3;UBERON:0001894!4.84e-07!7;UBERON:0006222!4.84e-07!7;UBERON:0006331!9.72e-07!3|ontology_enrichment_uberon_v019=UBERON:0002037;9.73e-16;6!UBERON:0001905;2.59e-12;2!UBERON:0002757;2.59e-12;2!UBERON:0010134;2.59e-12;2!UBERON:0005408;2.59e-12;2!UBERON:0001899;2.59e-12;2!UBERON:0002680;7.96e-11;9!UBERON:0001895;7.96e-11;9!UBERON:0004733;2.37e-08;12!UBERON:0002028;2.37e-08;12!UBERON:0000073;4.86e-08;53!UBERON:0002616;4.86e-08;53!UBERON:0004732;8.89e-08;13!UBERON:0003296;8.61e-07;4!UBERON:0010133;8.61e-07;4!UBERON:0002784;8.61e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0002037,7.79e-16,6;UBERON:0006215,7.79e-16,6;UBERON:0001905,2.90e-12,2;UBERON:0002757,2.90e-12,2;UBERON:0010134,2.90e-12,2;UBERON:0005408,2.90e-12,2;UBERON:0001899,2.90e-12,2;UBERON:0002680,6.87e-11,9;UBERON:0001895,6.87e-11,9;UBERON:0010092,6.87e-11,9;UBERON:0000073,2.08e-10,53;UBERON:0002616,2.08e-10,53;UBERON:0001049,7.23e-10,56;UBERON:0005068,7.23e-10,56;UBERON:0006241,7.23e-10,56;UBERON:0007135,7.23e-10,56;UBERON:0004733,2.12e-08,12;UBERON:0002028,2.12e-08,12;UBERON:0007277,2.12e-08,12;UBERON:0000955,4.67e-08,68;UBERON:0006238,4.67e-08,68;UBERON:0004732,8.03e-08,13;UBERON:0003076,6.79e-07,15;UBERON:0003057,6.79e-07,15;UBERON:0001017,8.29e-07,81;UBERON:0003075,8.29e-07,82;UBERON:0007284,8.29e-07,82;UBERON:0003296,9.11e-07,4;UBERON:0010133,9.11e-07,4;UBERON:0002784,9.11e-07,4|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0.313454721478088,0,0,0,0.229240217243854,0.246301768349837,0.472264687882075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0.209658645508376,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.28066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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3751 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6238 | |||
|TSSclassifier=W | |||
|UniProt=Q9NZV8,A4D0V9 | |||
|association_with_transcript=-423bp_to_ENST00000331113,NM_012281,uc003vjj.1_5end | |||
|coexpression_cluster_id=C15 | |||
|description=CAGE_peak_4_at_KCND2_5end | |||
|id=chr7:119913285..119913298,+ | |||
|ontology_enrichment_celltype=CL:1000306!4.51e-07!4;CL:0002547!4.51e-07!4 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.30e-30;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.61e-33!57;UBERON:0005068!1.61e-33!57;UBERON:0006241!1.61e-33!57;UBERON:0007135!1.61e-33!57;UBERON:0002616!5.33e-32!59;UBERON:0000955!1.10e-26!69;UBERON:0006238!1.10e-26!69;UBERON:0001017!3.19e-25!82;UBERON:0002780!8.34e-24!41;UBERON:0001890!8.34e-24!41;UBERON:0006240!8.34e-24!41;UBERON:0005743!1.68e-23!86;UBERON:0003080!4.67e-23!42;UBERON:0000073!3.60e-20!94;UBERON:0001016!3.60e-20!94;UBERON:0003075!7.12e-20!86;UBERON:0007284!7.12e-20!86;UBERON:0007023!2.66e-19!115;UBERON:0002020!6.05e-19!34;UBERON:0003528!6.05e-19!34;UBERON:0002346!1.69e-18!90;UBERON:0001893!2.10e-18!34;UBERON:0002791!3.37e-17!33;UBERON:0001869!3.96e-16!32;UBERON:0003056!1.54e-13!61;UBERON:0000033!7.56e-13!123;UBERON:0000153!1.45e-12!129;UBERON:0007811!1.45e-12!129;UBERON:0002308!1.64e-12!9;UBERON:0000125!1.64e-12!9;UBERON:0004733!2.88e-12!12;UBERON:0002028!2.88e-12!12;UBERON:0007277!2.88e-12!12;UBERON:0003076!1.30e-11!15;UBERON:0003057!1.30e-11!15;UBERON:0002619!1.44e-11!22;UBERON:0002298!1.93e-11!8;UBERON:0004732!3.76e-11!13;UBERON:0001950!4.64e-11!20;UBERON:0000956!8.00e-10!25;UBERON:0000203!8.00e-10!25;UBERON:0009663!4.44e-09!7;UBERON:0002420!5.46e-09!9;UBERON:0007245!5.46e-09!9;UBERON:0010009!5.46e-09!9;UBERON:0010011!5.46e-09!9;UBERON:0000454!5.46e-09!9;UBERON:0000025!9.38e-09!194;UBERON:0004121!2.10e-08!169;UBERON:0000924!5.69e-08!173;UBERON:0006601!5.69e-08!173;UBERON:0002680!6.29e-08!9;UBERON:0001895!6.29e-08!9;UBERON:0010092!6.29e-08!9;UBERON:0001871!2.47e-07!7;UBERON:0000200!3.72e-07!6;UBERON:0000415!4.51e-07!4;UBERON:0007240!4.51e-07!4;UBERON:0005742!4.51e-07!4;UBERON:0005734!4.51e-07!4;UBERON:0004664!4.51e-07!4;UBERON:0004663!4.51e-07!4;UBERON:0000988!4.61e-07!3;UBERON:0001894!4.84e-07!7;UBERON:0006222!4.84e-07!7;UBERON:0006331!9.72e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;9.73e-16;6!UBERON:0001905;2.59e-12;2!UBERON:0002757;2.59e-12;2!UBERON:0010134;2.59e-12;2!UBERON:0005408;2.59e-12;2!UBERON:0001899;2.59e-12;2!UBERON:0002680;7.96e-11;9!UBERON:0001895;7.96e-11;9!UBERON:0004733;2.37e-08;12!UBERON:0002028;2.37e-08;12!UBERON:0000073;4.86e-08;53!UBERON:0002616;4.86e-08;53!UBERON:0004732;8.89e-08;13!UBERON:0003296;8.61e-07;4!UBERON:0010133;8.61e-07;4!UBERON:0002784;8.61e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,7.79e-16,6;UBERON:0006215,7.79e-16,6;UBERON:0001905,2.90e-12,2;UBERON:0002757,2.90e-12,2;UBERON:0010134,2.90e-12,2;UBERON:0005408,2.90e-12,2;UBERON:0001899,2.90e-12,2;UBERON:0002680,6.87e-11,9;UBERON:0001895,6.87e-11,9;UBERON:0010092,6.87e-11,9;UBERON:0000073,2.08e-10,53;UBERON:0002616,2.08e-10,53;UBERON:0001049,7.23e-10,56;UBERON:0005068,7.23e-10,56;UBERON:0006241,7.23e-10,56;UBERON:0007135,7.23e-10,56;UBERON:0004733,2.12e-08,12;UBERON:0002028,2.12e-08,12;UBERON:0007277,2.12e-08,12;UBERON:0000955,4.67e-08,68;UBERON:0006238,4.67e-08,68;UBERON:0004732,8.03e-08,13;UBERON:0003076,6.79e-07,15;UBERON:0003057,6.79e-07,15;UBERON:0001017,8.29e-07,81;UBERON:0003075,8.29e-07,82;UBERON:0007284,8.29e-07,82;UBERON:0003296,9.11e-07,4;UBERON:0010133,9.11e-07,4;UBERON:0002784,9.11e-07,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0.313454721478088,0,0,0,0.229240217243854,0.246301768349837,0.472264687882075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0.209658645508376,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0.160853921143607,0,0,0,0.0821271560138091,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,8.23389091699175,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,1.03423011972439,0,0,0,0.60298219312704,0,1.87984741883082,2.36438095162838,0.438770794307945,0,0,0,0.113942055847001,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0.904980694530854,0.52893040697076,0,0,0,0,0,0,0,0,0,0.544017803369474,0,0.306345576763462,0,0,0,0.244052529803926,0.250381861413,0.573409195690071,0.221858103073705,0.372578417648301,0,0,0,0,0,0,0.434763085832475,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0.310525913752519,0,0,0,0,0,0,0.545545977607678,0,1.85613503951397,0,0,0.686791410365586,1.01024846629776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,1.26035848110859,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.270150338473579,0,0.206686796501184,0.126831620387814,1.09394961803644,0,0,0,0,1.07140367175657,0,0,0.682986574053893,0.0887023701626388,0.115233987555779,0,0.883606528698812,0.197318320688547,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0.707029641304878,0,0,0.4226557275834,0,0,0,0,0.178553938605658,0,0,0,0,0.286679166302903,0,0.135982980381829,0.872701380680755,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0.829169439458779,0.20686599172379,0.213233981900981,0,0,0,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |||
|short_description=p4@KCND2 | |||
}} |
Revision as of 22:55, 13 September 2013
Short description: | p4@KCND2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_KCND2_5end |
Coexpression cluster: | C15_anaplastic_small_skeletal_neuroblastoma_parietal_temporal_tongue |
Association with transcript: | -423bp_to_ENST00000331113, NM_012281, uc003vjj.1_5end |
EntrezGene: | KCND2 |
HGNC: | 6238 |
UniProt: | Q9NZV8A4D0V9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 7.79e-16 | 6 |
rhombic lip | 7.79e-16 | 6 |
pineal body | 2.90e-12 | 2 |
regional part of epithalamus | 2.90e-12 | 2 |
secretory circumventricular organ | 2.90e-12 | 2 |
circumventricular organ | 2.90e-12 | 2 |
epithalamus | 2.90e-12 | 2 |
regional part of metencephalon | 6.87e-11 | 9 |
metencephalon | 6.87e-11 | 9 |
future metencephalon | 6.87e-11 | 9 |
regional part of nervous system | 2.08e-10 | 53 |
regional part of brain | 2.08e-10 | 53 |
neural tube | 7.23e-10 | 56 |
neural rod | 7.23e-10 | 56 |
future spinal cord | 7.23e-10 | 56 |
neural keel | 7.23e-10 | 56 |
segmental subdivision of hindbrain | 2.12e-08 | 12 |
hindbrain | 2.12e-08 | 12 |
presumptive hindbrain | 2.12e-08 | 12 |
brain | 4.67e-08 | 68 |
future brain | 4.67e-08 | 68 |
segmental subdivision of nervous system | 8.03e-08 | 13 |
posterior neural tube | 6.79e-07 | 15 |
chordal neural plate | 6.79e-07 | 15 |
central nervous system | 8.29e-07 | 81 |
neural plate | 8.29e-07 | 82 |
presumptive neural plate | 8.29e-07 | 82 |
gland of diencephalon | 9.11e-07 | 4 |
neuroendocrine gland | 9.11e-07 | 4 |
regional part of diencephalon | 9.11e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.