FFCP PHASE1:Mm9::chr3:40549357..40549381,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18415|HGNC=|MCL_coexpression_id=0|UniProt=P48722|association_with_transcript=5bp_to_ENSMUST00000077083_5end|description=CAGE_peak_4_at_Hspa4l_5end|id=chr3:40549357..40549381,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.00e-14!63;UBERON:0004121!1.03e-13!102;UBERON:0000924!1.03e-13!102;UBERON:0006601!1.03e-13!102;UBERON:0002346!6.78e-13!71;UBERON:0003075!6.78e-13!71;UBERON:0007284!6.78e-13!71;UBERON:0001049!2.12e-11!52;UBERON:0005068!2.12e-11!52;UBERON:0006241!2.12e-11!52;UBERON:0007135!2.12e-11!52;UBERON:0000073!2.15e-11!75;UBERON:0001016!2.15e-11!75;UBERON:0001017!3.41e-11!73;UBERON:0005743!3.41e-11!73;UBERON:0000955!3.87e-11!50;UBERON:0006238!3.87e-11!50;UBERON:0003056!5.12e-11!49;UBERON:0002616!1.18e-10!49;UBERON:0000025!5.14e-09!114;UBERON:0004111!8.25e-09!122;UBERON:0000483!2.30e-08!181;UBERON:0003080!3.88e-08!40;UBERON:0002780!1.18e-07!39;UBERON:0001890!1.18e-07!39;UBERON:0006240!1.18e-07!39;UBERON:0000119!1.29e-07!183;UBERON:0007811!1.42e-07!86;UBERON:0002020!1.75e-07!34;UBERON:0002021!2.06e-07!10;UBERON:0000411!2.06e-07!10;UBERON:0001950!2.06e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.51e-22,92;UBERON:0004121,6.31e-17,95;UBERON:0000924,6.31e-17,95;UBERON:0006601,6.31e-17,95;UBERON:0002346,1.11e-16,64;UBERON:0003075,1.11e-16,64;UBERON:0007284,1.11e-16,64;UBERON:0010371,1.17e-16,73;UBERON:0000073,1.89e-14,54;UBERON:0001049,3.89e-13,52;UBERON:0005068,3.89e-13,52;UBERON:0006241,3.89e-13,52;UBERON:0007135,3.89e-13,52;UBERON:0001016,1.12e-12,75;UBERON:0003056,1.14e-12,49;UBERON:0001017,1.97e-12,73;UBERON:0000955,6.60e-11,47;UBERON:0006238,6.60e-11,47;UBERON:0002616,2.36e-10,46;UBERON:0003080,3.41e-09,40;UBERON:0000025,8.71e-09,114;UBERON:0002021,1.03e-08,10;UBERON:0000411,1.03e-08,10;UBERON:0001950,1.03e-08,10;UBERON:0002780,1.29e-08,39;UBERON:0001890,1.29e-08,39;UBERON:0006240,1.29e-08,39;UBERON:0004111,2.58e-08,122;UBERON:0002020,4.10e-08,34;UBERON:0000483,8.89e-08,174;UBERON:0000119,2.23e-07,176|phase1_expression=1.44133962394315,0.697950815278722,0.454999239389536,0.90739263392049,0,1.6787927191189,1.16806320297763,0.516493293766305,0.563154888606667,0.234064526321993,0.513653904676515,0.717949430958028,0.171200729931206,0.524522414513984,0.333109761815663,0.607425802169478,0,0,0.137114433605739,0.84877930359606,43.2870346868945,0.695036658406197,0.783599367416806,1.11994695955385,0.91763712426868,1.14846392823004,0.430761996159075,0.430942465371778,1.14014051673824,0.252030129759931,0.221730510655305,0,0,0,2.88851619751275,1.66234645358492,1.22501613757421,0.837063261473815,1.5626706890476,4.71171369576418,1.76469446409304,2.73218193983378,2.91306211818692,0.377690453926732,0.405507724878058,0.367093504323363,0,0.872100625521786,0.439372365468944,0.388859798148567,0.419959264876088,1.43752564364972,0.335565212115473,1.45072428402269,0,1.28629718017973,0.85960031981627,0.515672092277442,1.61853168687678,0,0.633831403506179,0,0,0,0,0,0,0.384218305321555,0.622137673850866,0.675029691658453,0.420649922702764,2.85650984403804,1.54607978666129,0.61245399607477,0.670918297127655,0,12.1127469099328,12.257984456178,14.5926206593431,0.923204014111357,1.73826522844578,0.52091337055676,6.97957497503452,13.5063026407603,11.6126668310376,5.89257170947335,4.41352210477219,1.86399445825301,1.13589289999776,1.43585964202892,0.869593466105033,1.72084775396277,0.679971333707751,1.07940638327563,0,1.34408066129201,5.05599912474307,0.170430322578058,0,0.35333957451034,1.97180787687353,0,0,0,2.16491041011214,1.77351905832569,3.0331466700887,6.62266502370548,0.258937883647172,1.92974780784272,0.346970653532272,0,0.230615497256059,0.753613202763113,1.05829836422134,1.38233250462643,2.47194967734374,0.722996784599558,0,0.323533699894818,1.10420759230197,0,0,6.14839673724249,4.1889341362691,0.510914110417183,0.718890747035522,0,0.889491589511453,11.6836698735762,11.4375150704657,1.88481528169297,15.8180131374972,14.5757810678288,8.93488591606108,8.76102820565891,0.509196819251581,0.870848794270651,1.0108910337347,2.73574412652416,1.17108398666433,2.5289231487682,1.80062129805349,1.50704817835715,3.06164246180975,2.562274405697,2.90475346135159,6.20888089773638,0,0.945530400839096,0.175951124163949,0.219195732427575,0.834141747676794,0.348252166522167,0,0.199034266818493,0.702213187313235,1.02939162845886,0.852490498186778,1.65700618028402,1.17263029990548,2.16074473753218,2.13070262026689,3.14822770795846,3.08534225774756,2.09280550275367,2.14618721119695,2.10177616260905,3.12663714835613,2.46251196118643,1.62137619091711,2.92399974850665,2.19550115291051,2.14730270016595,10.3042074796422,2.16099685996497,0.330418782983798,1.32225283331772,0.426576501070468,0.464473343720877,0.902072229254653,1.21010114774006,1.55664630691409,1.52180500890047,0.949058123089023,0.658795818896044,1.25667604400135,0.198956472041151,0,0,1.29682829924817,0.199141273254367,0.18966790095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| ||
|EntrezGene=18415 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=P48722 | |||
|association_with_transcript=5bp_to_ENSMUST00000077083_5end | |||
|description=CAGE_peak_4_at_Hspa4l_5end | |||
|id=chr3:40549357..40549381,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.00e-14!63;UBERON:0004121!1.03e-13!102;UBERON:0000924!1.03e-13!102;UBERON:0006601!1.03e-13!102;UBERON:0002346!6.78e-13!71;UBERON:0003075!6.78e-13!71;UBERON:0007284!6.78e-13!71;UBERON:0001049!2.12e-11!52;UBERON:0005068!2.12e-11!52;UBERON:0006241!2.12e-11!52;UBERON:0007135!2.12e-11!52;UBERON:0000073!2.15e-11!75;UBERON:0001016!2.15e-11!75;UBERON:0001017!3.41e-11!73;UBERON:0005743!3.41e-11!73;UBERON:0000955!3.87e-11!50;UBERON:0006238!3.87e-11!50;UBERON:0003056!5.12e-11!49;UBERON:0002616!1.18e-10!49;UBERON:0000025!5.14e-09!114;UBERON:0004111!8.25e-09!122;UBERON:0000483!2.30e-08!181;UBERON:0003080!3.88e-08!40;UBERON:0002780!1.18e-07!39;UBERON:0001890!1.18e-07!39;UBERON:0006240!1.18e-07!39;UBERON:0000119!1.29e-07!183;UBERON:0007811!1.42e-07!86;UBERON:0002020!1.75e-07!34;UBERON:0002021!2.06e-07!10;UBERON:0000411!2.06e-07!10;UBERON:0001950!2.06e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,5.51e-22,92;UBERON:0004121,6.31e-17,95;UBERON:0000924,6.31e-17,95;UBERON:0006601,6.31e-17,95;UBERON:0002346,1.11e-16,64;UBERON:0003075,1.11e-16,64;UBERON:0007284,1.11e-16,64;UBERON:0010371,1.17e-16,73;UBERON:0000073,1.89e-14,54;UBERON:0001049,3.89e-13,52;UBERON:0005068,3.89e-13,52;UBERON:0006241,3.89e-13,52;UBERON:0007135,3.89e-13,52;UBERON:0001016,1.12e-12,75;UBERON:0003056,1.14e-12,49;UBERON:0001017,1.97e-12,73;UBERON:0000955,6.60e-11,47;UBERON:0006238,6.60e-11,47;UBERON:0002616,2.36e-10,46;UBERON:0003080,3.41e-09,40;UBERON:0000025,8.71e-09,114;UBERON:0002021,1.03e-08,10;UBERON:0000411,1.03e-08,10;UBERON:0001950,1.03e-08,10;UBERON:0002780,1.29e-08,39;UBERON:0001890,1.29e-08,39;UBERON:0006240,1.29e-08,39;UBERON:0004111,2.58e-08,122;UBERON:0002020,4.10e-08,34;UBERON:0000483,8.89e-08,174;UBERON:0000119,2.23e-07,176 | |||
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| |||
|short_description=p4@Hspa4l | |||
}} |
Revision as of 02:12, 14 September 2013
Short description: | p4@Hspa4l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Hspa4l_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 5bp_to_ENSMUST00000077083_5end |
EntrezGene: | Hspa4l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 5.51e-22 | 92 |
ectoderm-derived structure | 6.31e-17 | 95 |
ectoderm | 6.31e-17 | 95 |
presumptive ectoderm | 6.31e-17 | 95 |
neurectoderm | 1.11e-16 | 64 |
neural plate | 1.11e-16 | 64 |
presumptive neural plate | 1.11e-16 | 64 |
ecto-epithelium | 1.17e-16 | 73 |
regional part of nervous system | 1.89e-14 | 54 |
neural tube | 3.89e-13 | 52 |
neural rod | 3.89e-13 | 52 |
future spinal cord | 3.89e-13 | 52 |
neural keel | 3.89e-13 | 52 |
nervous system | 1.12e-12 | 75 |
pre-chordal neural plate | 1.14e-12 | 49 |
central nervous system | 1.97e-12 | 73 |
brain | 6.60e-11 | 47 |
future brain | 6.60e-11 | 47 |
regional part of brain | 2.36e-10 | 46 |
anterior neural tube | 3.41e-09 | 40 |
tube | 8.71e-09 | 114 |
occipital lobe | 1.03e-08 | 10 |
visual cortex | 1.03e-08 | 10 |
neocortex | 1.03e-08 | 10 |
regional part of forebrain | 1.29e-08 | 39 |
forebrain | 1.29e-08 | 39 |
future forebrain | 1.29e-08 | 39 |
anatomical conduit | 2.58e-08 | 122 |
gray matter | 4.10e-08 | 34 |
epithelium | 8.89e-08 | 174 |
cell layer | 2.23e-07 | 176 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.