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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008431
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0000010
|is_a=EFO:0002091;;FF:0000010
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12379
|name=amniotic membrane cells, donor3
|name=amniotic membrane cells, donor3
|namespace=
|namespace=
Line 85: Line 87:
|top_motifs=FOXL1:2.31664437587;PAX4:2.19483939877;NKX2-1,4:2.12953346534;HAND1,2:2.02299095803;SNAI1..3:1.98896591685;HOX{A6,A7,B6,B7}:1.98704421016;EP300:1.9334910447;FOXM1:1.91994503774;ZEB1:1.77760281958;RORA:1.70825824866;NKX2-2,8:1.56722281265;CDC5L:1.5468868799;FOXO1,3,4:1.49823769421;FOXN1:1.46877515309;HIF1A:1.46276468348;XCPE1{core}:1.43037381255;ZNF148:1.29929070134;TEAD1:1.26659912725;AIRE:1.25855184483;FOX{I1,J2}:1.21039851511;POU6F1:1.20935148872;SP1:1.10166432227;HMGA1,2:1.05471077744;TEF:1.00983236428;ARID5B:0.987920395602;MAZ:0.940203042252;PPARG:0.920504335992;POU3F1..4:0.911340086924;TBX4,5:0.8987396591;GLI1..3:0.891614262353;FOS_FOS{B,L1}_JUN{B,D}:0.871473418347;TP53:0.854819703128;TLX2:0.774979251224;FOX{D1,D2}:0.751496389477;CRX:0.747160206813;PAX8:0.686288193013;TFAP2{A,C}:0.631026384335;PAX5:0.622039597351;MYOD1:0.612664509964;BACH2:0.606768144529;GCM1,2:0.597345902457;ONECUT1,2:0.595016274021;UFEwm:0.581638540584;ZNF384:0.559227623279;STAT1,3:0.502795232433;RXRA_VDR{dimer}:0.481861483377;IKZF1:0.479123304428;TBP:0.469838683651;ALX1:0.45980531434;HOX{A5,B5}:0.451455347093;ADNP_IRX_SIX_ZHX:0.438983736026;ZIC1..3:0.404971707214;POU1F1:0.400057119706;BPTF:0.374784592199;FOXQ1:0.361786212001;FOSL2:0.361736647448;FOXA2:0.358378515188;RFX1:0.318769144457;LEF1_TCF7_TCF7L1,2:0.316721383938;PAX1,9:0.306583477645;VSX1,2:0.305980777181;ZNF238:0.295692153516;CREB1:0.258044054323;HLF:0.25221005401;NFATC1..3:0.248665006526;NFIL3:0.244997051001;MTF1:0.237027176488;PITX1..3:0.216430016946;TFCP2:0.211465843433;ESR1:0.201497322947;NKX2-3_NKX2-5:0.190497247818;JUN:0.182515903093;MED-1{core}:0.178325007391;bHLH_family:0.176350066918;NR3C1:0.176283125338;DBP:0.175366395951;GTF2I:0.128024378998;HOXA9_MEIS1:0.105493969854;ZBTB6:0.101339138981;PAX2:0.0820453280066;HBP1_HMGB_SSRP1_UBTF:0.0673433472273;EVI1:0.0550102854654;HMX1:0.0117837373067;NRF1:0.0114859717235;EBF1:-0.00539253530439;HOX{A4,D4}:-0.0177746939063;SOX5:-0.0181870891671;ELK1,4_GABP{A,B1}:-0.0283591125945;GATA6:-0.0417042416454;GZF1:-0.0430442290473;NKX3-2:-0.047630160683;POU2F1..3:-0.0637146524054;ATF5_CREB3:-0.086858742427;ZNF143:-0.0917137290203;HSF1,2:-0.105571543355;KLF4:-0.107629122309;ZBTB16:-0.110008683164;NFE2:-0.123568015097;SREBF1,2:-0.141505968582;TLX1..3_NFIC{dimer}:-0.150813593537;ATF6:-0.153574029416;MYBL2:-0.167379310462;RFX2..5_RFXANK_RFXAP:-0.196839915718;ATF4:-0.204022907772;PAX3,7:-0.210683992222;EGR1..3:-0.213256678358;HNF1A:-0.225625512789;XBP1:-0.226579194543;ALX4:-0.235758690724;FOXP3:-0.237476678191;NR1H4:-0.26765478273;SOX17:-0.268119775413;MZF1:-0.285894840342;MEF2{A,B,C,D}:-0.305248671967;HIC1:-0.392738023359;RREB1:-0.402197210837;REST:-0.403348872688;GFI1:-0.413105484152;IKZF2:-0.413678441676;STAT5{A,B}:-0.416662886097;MTE{core}:-0.428936626685;ATF2:-0.439388967026;EN1,2:-0.439873935039;FOXP1:-0.441816669224;PATZ1:-0.450820199224;AHR_ARNT_ARNT2:-0.465813245287;ESRRA:-0.472461781683;MYFfamily:-0.488232429936;PBX1:-0.492779001981;IRF7:-0.502064699745;NFKB1_REL_RELA:-0.515586009133;ZNF423:-0.531142060197;OCT4_SOX2{dimer}:-0.544065162735;MYB:-0.544345641389;LMO2:-0.551722751539;RXR{A,B,G}:-0.567192279908;HNF4A_NR2F1,2:-0.56786226601;NHLH1,2:-0.569658788552;AR:-0.583388908689;SMAD1..7,9:-0.604592612466;SPI1:-0.631804884385;TFAP2B:-0.632819663431;NFY{A,B,C}:-0.640085499405;NR5A1,2:-0.640470001441;SOX2:-0.645190360297;DMAP1_NCOR{1,2}_SMARC:-0.647051799469;NKX6-1,2:-0.648671265025;ETS1,2:-0.659530491859;FOX{F1,F2,J1}:-0.675026056593;GTF2A1,2:-0.678899286012;PAX6:-0.687056912911;RBPJ:-0.701872123716;YY1:-0.702391808584;ELF1,2,4:-0.713281239517;CEBPA,B_DDIT3:-0.728137120872;CUX2:-0.74712544523;SOX{8,9,10}:-0.751337594089;ZFP161:-0.760406467288;HES1:-0.773419758489;PDX1:-0.778630261248;NANOG{mouse}:-0.787670486137;GFI1B:-0.789862897975;LHX3,4:-0.795500833026;IRF1,2:-0.809249125694;SPIB:-0.845155157739;RUNX1..3:-0.858924132209;GATA4:-0.886261001639;SRF:-0.919349607824;TFAP4:-0.930297596785;STAT2,4,6:-0.949780555859;TGIF1:-0.955424103992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.986366454384;E2F1..5:-1.01337682704;NR6A1:-1.02698799803;TOPORS:-1.0314759649;MAFB:-1.05877844872;NFE2L2:-1.06512587115;PRDM1:-1.09496282954;TFDP1:-1.18474388378;BREu{core}:-1.19237128596;SPZ1:-1.21480286586;PRRX1,2:-1.22082045137;FOXD3:-1.23233405579;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27779591958;CDX1,2,4:-1.28804464076;T:-1.29391327354;TAL1_TCF{3,4,12}:-1.36707342871;NANOG:-1.44701866391;NFE2L1:-1.52787141609;NKX3-1:-1.63109746664;POU5F1:-1.72580579526;NFIX:-1.91133180355
|top_motifs=FOXL1:2.31664437587;PAX4:2.19483939877;NKX2-1,4:2.12953346534;HAND1,2:2.02299095803;SNAI1..3:1.98896591685;HOX{A6,A7,B6,B7}:1.98704421016;EP300:1.9334910447;FOXM1:1.91994503774;ZEB1:1.77760281958;RORA:1.70825824866;NKX2-2,8:1.56722281265;CDC5L:1.5468868799;FOXO1,3,4:1.49823769421;FOXN1:1.46877515309;HIF1A:1.46276468348;XCPE1{core}:1.43037381255;ZNF148:1.29929070134;TEAD1:1.26659912725;AIRE:1.25855184483;FOX{I1,J2}:1.21039851511;POU6F1:1.20935148872;SP1:1.10166432227;HMGA1,2:1.05471077744;TEF:1.00983236428;ARID5B:0.987920395602;MAZ:0.940203042252;PPARG:0.920504335992;POU3F1..4:0.911340086924;TBX4,5:0.8987396591;GLI1..3:0.891614262353;FOS_FOS{B,L1}_JUN{B,D}:0.871473418347;TP53:0.854819703128;TLX2:0.774979251224;FOX{D1,D2}:0.751496389477;CRX:0.747160206813;PAX8:0.686288193013;TFAP2{A,C}:0.631026384335;PAX5:0.622039597351;MYOD1:0.612664509964;BACH2:0.606768144529;GCM1,2:0.597345902457;ONECUT1,2:0.595016274021;UFEwm:0.581638540584;ZNF384:0.559227623279;STAT1,3:0.502795232433;RXRA_VDR{dimer}:0.481861483377;IKZF1:0.479123304428;TBP:0.469838683651;ALX1:0.45980531434;HOX{A5,B5}:0.451455347093;ADNP_IRX_SIX_ZHX:0.438983736026;ZIC1..3:0.404971707214;POU1F1:0.400057119706;BPTF:0.374784592199;FOXQ1:0.361786212001;FOSL2:0.361736647448;FOXA2:0.358378515188;RFX1:0.318769144457;LEF1_TCF7_TCF7L1,2:0.316721383938;PAX1,9:0.306583477645;VSX1,2:0.305980777181;ZNF238:0.295692153516;CREB1:0.258044054323;HLF:0.25221005401;NFATC1..3:0.248665006526;NFIL3:0.244997051001;MTF1:0.237027176488;PITX1..3:0.216430016946;TFCP2:0.211465843433;ESR1:0.201497322947;NKX2-3_NKX2-5:0.190497247818;JUN:0.182515903093;MED-1{core}:0.178325007391;bHLH_family:0.176350066918;NR3C1:0.176283125338;DBP:0.175366395951;GTF2I:0.128024378998;HOXA9_MEIS1:0.105493969854;ZBTB6:0.101339138981;PAX2:0.0820453280066;HBP1_HMGB_SSRP1_UBTF:0.0673433472273;EVI1:0.0550102854654;HMX1:0.0117837373067;NRF1:0.0114859717235;EBF1:-0.00539253530439;HOX{A4,D4}:-0.0177746939063;SOX5:-0.0181870891671;ELK1,4_GABP{A,B1}:-0.0283591125945;GATA6:-0.0417042416454;GZF1:-0.0430442290473;NKX3-2:-0.047630160683;POU2F1..3:-0.0637146524054;ATF5_CREB3:-0.086858742427;ZNF143:-0.0917137290203;HSF1,2:-0.105571543355;KLF4:-0.107629122309;ZBTB16:-0.110008683164;NFE2:-0.123568015097;SREBF1,2:-0.141505968582;TLX1..3_NFIC{dimer}:-0.150813593537;ATF6:-0.153574029416;MYBL2:-0.167379310462;RFX2..5_RFXANK_RFXAP:-0.196839915718;ATF4:-0.204022907772;PAX3,7:-0.210683992222;EGR1..3:-0.213256678358;HNF1A:-0.225625512789;XBP1:-0.226579194543;ALX4:-0.235758690724;FOXP3:-0.237476678191;NR1H4:-0.26765478273;SOX17:-0.268119775413;MZF1:-0.285894840342;MEF2{A,B,C,D}:-0.305248671967;HIC1:-0.392738023359;RREB1:-0.402197210837;REST:-0.403348872688;GFI1:-0.413105484152;IKZF2:-0.413678441676;STAT5{A,B}:-0.416662886097;MTE{core}:-0.428936626685;ATF2:-0.439388967026;EN1,2:-0.439873935039;FOXP1:-0.441816669224;PATZ1:-0.450820199224;AHR_ARNT_ARNT2:-0.465813245287;ESRRA:-0.472461781683;MYFfamily:-0.488232429936;PBX1:-0.492779001981;IRF7:-0.502064699745;NFKB1_REL_RELA:-0.515586009133;ZNF423:-0.531142060197;OCT4_SOX2{dimer}:-0.544065162735;MYB:-0.544345641389;LMO2:-0.551722751539;RXR{A,B,G}:-0.567192279908;HNF4A_NR2F1,2:-0.56786226601;NHLH1,2:-0.569658788552;AR:-0.583388908689;SMAD1..7,9:-0.604592612466;SPI1:-0.631804884385;TFAP2B:-0.632819663431;NFY{A,B,C}:-0.640085499405;NR5A1,2:-0.640470001441;SOX2:-0.645190360297;DMAP1_NCOR{1,2}_SMARC:-0.647051799469;NKX6-1,2:-0.648671265025;ETS1,2:-0.659530491859;FOX{F1,F2,J1}:-0.675026056593;GTF2A1,2:-0.678899286012;PAX6:-0.687056912911;RBPJ:-0.701872123716;YY1:-0.702391808584;ELF1,2,4:-0.713281239517;CEBPA,B_DDIT3:-0.728137120872;CUX2:-0.74712544523;SOX{8,9,10}:-0.751337594089;ZFP161:-0.760406467288;HES1:-0.773419758489;PDX1:-0.778630261248;NANOG{mouse}:-0.787670486137;GFI1B:-0.789862897975;LHX3,4:-0.795500833026;IRF1,2:-0.809249125694;SPIB:-0.845155157739;RUNX1..3:-0.858924132209;GATA4:-0.886261001639;SRF:-0.919349607824;TFAP4:-0.930297596785;STAT2,4,6:-0.949780555859;TGIF1:-0.955424103992;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.986366454384;E2F1..5:-1.01337682704;NR6A1:-1.02698799803;TOPORS:-1.0314759649;MAFB:-1.05877844872;NFE2L2:-1.06512587115;PRDM1:-1.09496282954;TFDP1:-1.18474388378;BREu{core}:-1.19237128596;SPZ1:-1.21480286586;PRRX1,2:-1.22082045137;FOXD3:-1.23233405579;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27779591958;CDX1,2,4:-1.28804464076;T:-1.29391327354;TAL1_TCF{3,4,12}:-1.36707342871;NANOG:-1.44701866391;NFE2L1:-1.52787141609;NKX3-1:-1.63109746664;POU5F1:-1.72580579526;NFIX:-1.91133180355
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008431
|accession_numbers=DRX008539;DRR009411;DRZ000836;DRZ002221;CAGE
|library_id=CNhs12379
}}
}}

Revision as of 22:38, 16 October 2013


Name:amniotic membrane cells, donor3
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueamnion
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineNA
companyNA
collaborationHiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008431
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.193
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.398
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.872
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.493
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.274
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.348
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.273
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.348
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.576
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.582
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.541
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.208
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0486
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.116
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.454
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.00103
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.545
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0291
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.316
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma1.143
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.576
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12379

Jaspar motifP-value
MA0002.20.019
MA0003.10.788
MA0004.10.714
MA0006.10.315
MA0007.10.993
MA0009.10.779
MA0014.10.0307
MA0017.10.321
MA0018.20.0458
MA0019.10.043
MA0024.10.0187
MA0025.10.317
MA0027.10.152
MA0028.10.87
MA0029.10.332
MA0030.10.199
MA0031.10.874
MA0035.20.851
MA0038.10.348
MA0039.25.80705e-4
MA0040.10.775
MA0041.10.622
MA0042.10.634
MA0043.10.0361
MA0046.10.207
MA0047.20.548
MA0048.10.747
MA0050.12.48473e-6
MA0051.14.83316e-4
MA0052.10.491
MA0055.10.134
MA0057.10.892
MA0058.10.618
MA0059.10.621
MA0060.10.00799
MA0061.10.0132
MA0062.20.00537
MA0065.20.862
MA0066.10.489
MA0067.10.153
MA0068.10.738
MA0069.10.287
MA0070.10.313
MA0071.10.509
MA0072.10.34
MA0073.10.89
MA0074.10.857
MA0076.10.154
MA0077.10.0792
MA0078.10.969
MA0079.20.208
MA0080.29.41079e-11
MA0081.10.00581
MA0083.10.0098
MA0084.10.223
MA0087.10.855
MA0088.10.411
MA0090.11.00176e-7
MA0091.10.538
MA0092.10.26
MA0093.10.665
MA0099.24.93384e-8
MA0100.10.37
MA0101.13.25219e-4
MA0102.20.0622
MA0103.13.07614e-7
MA0104.20.258
MA0105.10.362
MA0106.10.439
MA0107.13.42055e-5
MA0108.20.896
MA0111.10.785
MA0112.20.54
MA0113.10.0247
MA0114.10.737
MA0115.10.774
MA0116.10.799
MA0117.10.586
MA0119.10.475
MA0122.10.204
MA0124.10.591
MA0125.10.214
MA0131.10.903
MA0135.10.342
MA0136.16.42326e-8
MA0137.20.0984
MA0138.20.585
MA0139.10.618
MA0140.10.628
MA0141.10.149
MA0142.10.979
MA0143.10.577
MA0144.10.559
MA0145.10.18
MA0146.10.00431
MA0147.10.497
MA0148.10.392
MA0149.10.89
MA0150.10.459
MA0152.10.242
MA0153.10.737
MA0154.10.681
MA0155.10.337
MA0156.16.85892e-8
MA0157.10.601
MA0159.10.498
MA0160.10.665
MA0162.10.354
MA0163.10.993
MA0164.10.145
MA0258.10.387
MA0259.10.536



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12379

Novel motifP-value
10.482
100.43
1000.496
1010.52
1020.628
1030.0904
1040.548
1050.358
1060.999
1070.781
1080.129
1090.00101
110.779
1100.19
1110.422
1120.989
1135.26573e-4
1140.496
1150.909
1160.0955
1170.0149
1180.00199
1190.784
120.872
1200.183
1210.291
1220.788
1230.046
1240.0398
1250.973
1260.683
1270.934
1280.402
1290.317
130.41
1300.112
1310.0188
1320.26
1330.0123
1340.0413
1350.504
1360.0132
1370.217
1380.871
1390.405
140.933
1400.177
1410.653
1420.783
1430.254
1440.615
1450.569
1460.202
1470.984
1480.43
1490.382
150.789
1500.766
1510.108
1520.0976
1530.961
1540.589
1550.0167
1560.204
1570.564
1580.17
1590.858
160.0773
1600.155
1610.462
1620.806
1630.0819
1640.124
1650.345
1660.79
1670.894
1680.617
1690.02
170.423
180.809
190.678
20.207
200.215
210.244
220.0921
230.169
240.722
250.388
260.982
270.698
280.783
290.0817
30.262
300.252
310.928
320.906
330.526
340.0469
350.0468
360.0624
370.538
380.273
390.365
40.689
400.497
410.932
420.7
430.275
440.969
450.27
460.68
470.689
480.887
490.555
50.992
500.725
510.491
520.552
530.292
540.985
550.571
560.3
570.864
580.929
590.559
60.509
600.878
610.57
620.994
630.567
640.518
650.87
660.561
670.823
680.944
690.0667
70.588
700.0536
710.888
720.216
730.0813
740.131
750.042
760.406
770.212
780.523
790.8
80.572
800.497
810.771
820.979
830.978
840.31
850.0861
860.536
870.547
880.702
890.0865
90.945
900.583
910.302
920.966
930.528
940.879
950.464
960.425
970.143
980.387
990.641



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12379


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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