Personal tools

FF:13317-143A5: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008489
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0011215
|is_a=EFO:0002091;;FF:0011215
|is_obsolete=
|is_obsolete=
|library_ids=CNhs13646
|name=Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)
|name=Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)
|namespace=
|namespace=
Line 85: Line 87:
|top_motifs=SREBF1,2:2.85139889757;EN1,2:1.85365628891;RXRA_VDR{dimer}:1.80966439535;NR6A1:1.66662867324;ESRRA:1.51251476718;PAX8:1.39783315289;IRF7:1.33729727182;ESR1:1.27417370157;IRF1,2:1.20747216549;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20117813585;SPIB:1.18520637076;NFIL3:1.18401943264;NANOG{mouse}:1.16726055228;TFCP2:1.10905832843;DMAP1_NCOR{1,2}_SMARC:1.06544407211;SPI1:1.04060257043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.988391522776;FOXD3:0.935031988998;HMX1:0.791770761265;LHX3,4:0.779965990423;NFE2L1:0.762552394322;RXR{A,B,G}:0.758542190411;NKX2-2,8:0.743786753881;IKZF2:0.743642366401;EBF1:0.741349315581;GLI1..3:0.730551525833;HNF4A_NR2F1,2:0.677514840754;NFE2L2:0.637718796571;HLF:0.623981625924;NFKB1_REL_RELA:0.616028718282;ETS1,2:0.604597396181;FOXP3:0.562160908955;HAND1,2:0.556538706813;POU5F1:0.551298210138;MYOD1:0.538803605229;PAX1,9:0.528651617136;TLX2:0.510314786881;OCT4_SOX2{dimer}:0.492204185016;EP300:0.464670733604;PPARG:0.462445669689;NKX6-1,2:0.424629858991;SMAD1..7,9:0.404825097592;CEBPA,B_DDIT3:0.375051525231;HES1:0.372934619258;RORA:0.356876459263;STAT2,4,6:0.346466923095;ARID5B:0.303285726772;RUNX1..3:0.299523116515;PAX2:0.29124357275;SPZ1:0.267180667995;NKX3-2:0.214213955428;TBP:0.213528064862;MAFB:0.142341882055;IKZF1:0.139495438478;CDX1,2,4:0.109787941942;MTF1:0.0928545122845;ELF1,2,4:0.0663078786501;ALX4:0.0603325774862;VSX1,2:0.0354622519657;NFE2:0.0304379679336;FOSL2:0.0294982610737;TGIF1:-0.00930457922819;NFIX:-0.0133634491052;KLF4:-0.0152592164011;NR5A1,2:-0.0363014444675;FOX{F1,F2,J1}:-0.0387214578461;PRDM1:-0.0409043552836;PAX6:-0.0443688688057;ATF4:-0.050444339884;MYFfamily:-0.0554909113355;bHLH_family:-0.0648289447021;NHLH1,2:-0.0693294725137;GATA4:-0.0969060229328;ZEB1:-0.100382237085;TFAP4:-0.10124135496;NKX2-3_NKX2-5:-0.101659555971;ZBTB16:-0.102011678122;REST:-0.107775419545;UFEwm:-0.111452360327;FOS_FOS{B,L1}_JUN{B,D}:-0.128328647056;PRRX1,2:-0.149818253554;TAL1_TCF{3,4,12}:-0.155489029306;RFX2..5_RFXANK_RFXAP:-0.166775959297;HMGA1,2:-0.175603627004;GATA6:-0.178650087258;FOXO1,3,4:-0.211909518949;PAX4:-0.249678828127;BACH2:-0.280383276964;HOXA9_MEIS1:-0.291912394257;CRX:-0.293714141655;FOXA2:-0.306521839364;NR3C1:-0.321242274619;HOX{A5,B5}:-0.330484670702;GZF1:-0.354757537875;SRF:-0.381842765829;ATF5_CREB3:-0.397550932109;SOX5:-0.431131890503;LMO2:-0.459558961306;CUX2:-0.501223508545;ATF2:-0.522331964018;FOXN1:-0.525262606596;ZNF238:-0.559005798259;T:-0.560638517252;ONECUT1,2:-0.564938875821;AR:-0.571987613146;HNF1A:-0.578560903652;FOX{D1,D2}:-0.582405711042;MEF2{A,B,C,D}:-0.609208236752;ZNF148:-0.633267497942;ZNF423:-0.633378254611;YY1:-0.647666926917;MYB:-0.649761045358;PDX1:-0.651880037143;NR1H4:-0.656342293349;STAT5{A,B}:-0.669607333829;FOXM1:-0.674182940141;DBP:-0.681990673704;FOXQ1:-0.690140461729;ZBTB6:-0.736516096007;HOX{A6,A7,B6,B7}:-0.750465219001;HIF1A:-0.754703471838;CDC5L:-0.757006937649;GFI1B:-0.760931327373;NFATC1..3:-0.821841938712;HOX{A4,D4}:-0.830817870367;POU6F1:-0.838200077913;SOX{8,9,10}:-0.844176612337;ALX1:-0.844245916731;SNAI1..3:-0.84527827203;TLX1..3_NFIC{dimer}:-0.856593717687;PAX5:-0.879315149389;FOXP1:-0.883194845839;TP53:-0.892362909319;ZIC1..3:-0.914381654567;BREu{core}:-0.970411730583;SP1:-1.01299626113;EGR1..3:-1.01486160191;POU2F1..3:-1.02525290196;HSF1,2:-1.05228746543;TOPORS:-1.09715158677;GTF2I:-1.09823957073;POU3F1..4:-1.10676898117;ATF6:-1.11553973197;STAT1,3:-1.11624501119;GTF2A1,2:-1.12772715158;BPTF:-1.12926465781;TEAD1:-1.14279919137;XBP1:-1.16218911064;MYBL2:-1.16345775015;TFAP2{A,C}:-1.16512259816;TEF:-1.16583211906;SOX2:-1.16588485985;NANOG:-1.21097736105;RREB1:-1.21665171239;HIC1:-1.22546432455;TFAP2B:-1.24127690437;GCM1,2:-1.24478502857;LEF1_TCF7_TCF7L1,2:-1.24528134595;XCPE1{core}:-1.25322160102;PAX3,7:-1.27149339931;MED-1{core}:-1.2950615112;JUN:-1.29860095586;ZFP161:-1.30457811672;AHR_ARNT_ARNT2:-1.3061928436;PITX1..3:-1.3259622676;CREB1:-1.32837054547;FOXL1:-1.33495847361;E2F1..5:-1.36902228577;ADNP_IRX_SIX_ZHX:-1.39609658838;SOX17:-1.39758769819;FOX{I1,J2}:-1.42016133123;ELK1,4_GABP{A,B1}:-1.42209554144;AIRE:-1.44172402331;NKX3-1:-1.4447929525;ZNF143:-1.44862574932;EVI1:-1.48142689683;MTE{core}:-1.53863855081;MAZ:-1.54143710794;HBP1_HMGB_SSRP1_UBTF:-1.55334012252;NFY{A,B,C}:-1.55605158453;RFX1:-1.56952287066;ZNF384:-1.59344789929;PATZ1:-1.61649592058;RBPJ:-1.61874896336;TBX4,5:-1.66925794032;MZF1:-1.69242129116;NRF1:-1.70736589658;GFI1:-1.78417178763;NKX2-1,4:-1.79039303151;PBX1:-1.87465823532;TFDP1:-2.0410995313;POU1F1:-2.27462104393
|top_motifs=SREBF1,2:2.85139889757;EN1,2:1.85365628891;RXRA_VDR{dimer}:1.80966439535;NR6A1:1.66662867324;ESRRA:1.51251476718;PAX8:1.39783315289;IRF7:1.33729727182;ESR1:1.27417370157;IRF1,2:1.20747216549;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20117813585;SPIB:1.18520637076;NFIL3:1.18401943264;NANOG{mouse}:1.16726055228;TFCP2:1.10905832843;DMAP1_NCOR{1,2}_SMARC:1.06544407211;SPI1:1.04060257043;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.988391522776;FOXD3:0.935031988998;HMX1:0.791770761265;LHX3,4:0.779965990423;NFE2L1:0.762552394322;RXR{A,B,G}:0.758542190411;NKX2-2,8:0.743786753881;IKZF2:0.743642366401;EBF1:0.741349315581;GLI1..3:0.730551525833;HNF4A_NR2F1,2:0.677514840754;NFE2L2:0.637718796571;HLF:0.623981625924;NFKB1_REL_RELA:0.616028718282;ETS1,2:0.604597396181;FOXP3:0.562160908955;HAND1,2:0.556538706813;POU5F1:0.551298210138;MYOD1:0.538803605229;PAX1,9:0.528651617136;TLX2:0.510314786881;OCT4_SOX2{dimer}:0.492204185016;EP300:0.464670733604;PPARG:0.462445669689;NKX6-1,2:0.424629858991;SMAD1..7,9:0.404825097592;CEBPA,B_DDIT3:0.375051525231;HES1:0.372934619258;RORA:0.356876459263;STAT2,4,6:0.346466923095;ARID5B:0.303285726772;RUNX1..3:0.299523116515;PAX2:0.29124357275;SPZ1:0.267180667995;NKX3-2:0.214213955428;TBP:0.213528064862;MAFB:0.142341882055;IKZF1:0.139495438478;CDX1,2,4:0.109787941942;MTF1:0.0928545122845;ELF1,2,4:0.0663078786501;ALX4:0.0603325774862;VSX1,2:0.0354622519657;NFE2:0.0304379679336;FOSL2:0.0294982610737;TGIF1:-0.00930457922819;NFIX:-0.0133634491052;KLF4:-0.0152592164011;NR5A1,2:-0.0363014444675;FOX{F1,F2,J1}:-0.0387214578461;PRDM1:-0.0409043552836;PAX6:-0.0443688688057;ATF4:-0.050444339884;MYFfamily:-0.0554909113355;bHLH_family:-0.0648289447021;NHLH1,2:-0.0693294725137;GATA4:-0.0969060229328;ZEB1:-0.100382237085;TFAP4:-0.10124135496;NKX2-3_NKX2-5:-0.101659555971;ZBTB16:-0.102011678122;REST:-0.107775419545;UFEwm:-0.111452360327;FOS_FOS{B,L1}_JUN{B,D}:-0.128328647056;PRRX1,2:-0.149818253554;TAL1_TCF{3,4,12}:-0.155489029306;RFX2..5_RFXANK_RFXAP:-0.166775959297;HMGA1,2:-0.175603627004;GATA6:-0.178650087258;FOXO1,3,4:-0.211909518949;PAX4:-0.249678828127;BACH2:-0.280383276964;HOXA9_MEIS1:-0.291912394257;CRX:-0.293714141655;FOXA2:-0.306521839364;NR3C1:-0.321242274619;HOX{A5,B5}:-0.330484670702;GZF1:-0.354757537875;SRF:-0.381842765829;ATF5_CREB3:-0.397550932109;SOX5:-0.431131890503;LMO2:-0.459558961306;CUX2:-0.501223508545;ATF2:-0.522331964018;FOXN1:-0.525262606596;ZNF238:-0.559005798259;T:-0.560638517252;ONECUT1,2:-0.564938875821;AR:-0.571987613146;HNF1A:-0.578560903652;FOX{D1,D2}:-0.582405711042;MEF2{A,B,C,D}:-0.609208236752;ZNF148:-0.633267497942;ZNF423:-0.633378254611;YY1:-0.647666926917;MYB:-0.649761045358;PDX1:-0.651880037143;NR1H4:-0.656342293349;STAT5{A,B}:-0.669607333829;FOXM1:-0.674182940141;DBP:-0.681990673704;FOXQ1:-0.690140461729;ZBTB6:-0.736516096007;HOX{A6,A7,B6,B7}:-0.750465219001;HIF1A:-0.754703471838;CDC5L:-0.757006937649;GFI1B:-0.760931327373;NFATC1..3:-0.821841938712;HOX{A4,D4}:-0.830817870367;POU6F1:-0.838200077913;SOX{8,9,10}:-0.844176612337;ALX1:-0.844245916731;SNAI1..3:-0.84527827203;TLX1..3_NFIC{dimer}:-0.856593717687;PAX5:-0.879315149389;FOXP1:-0.883194845839;TP53:-0.892362909319;ZIC1..3:-0.914381654567;BREu{core}:-0.970411730583;SP1:-1.01299626113;EGR1..3:-1.01486160191;POU2F1..3:-1.02525290196;HSF1,2:-1.05228746543;TOPORS:-1.09715158677;GTF2I:-1.09823957073;POU3F1..4:-1.10676898117;ATF6:-1.11553973197;STAT1,3:-1.11624501119;GTF2A1,2:-1.12772715158;BPTF:-1.12926465781;TEAD1:-1.14279919137;XBP1:-1.16218911064;MYBL2:-1.16345775015;TFAP2{A,C}:-1.16512259816;TEF:-1.16583211906;SOX2:-1.16588485985;NANOG:-1.21097736105;RREB1:-1.21665171239;HIC1:-1.22546432455;TFAP2B:-1.24127690437;GCM1,2:-1.24478502857;LEF1_TCF7_TCF7L1,2:-1.24528134595;XCPE1{core}:-1.25322160102;PAX3,7:-1.27149339931;MED-1{core}:-1.2950615112;JUN:-1.29860095586;ZFP161:-1.30457811672;AHR_ARNT_ARNT2:-1.3061928436;PITX1..3:-1.3259622676;CREB1:-1.32837054547;FOXL1:-1.33495847361;E2F1..5:-1.36902228577;ADNP_IRX_SIX_ZHX:-1.39609658838;SOX17:-1.39758769819;FOX{I1,J2}:-1.42016133123;ELK1,4_GABP{A,B1}:-1.42209554144;AIRE:-1.44172402331;NKX3-1:-1.4447929525;ZNF143:-1.44862574932;EVI1:-1.48142689683;MTE{core}:-1.53863855081;MAZ:-1.54143710794;HBP1_HMGB_SSRP1_UBTF:-1.55334012252;NFY{A,B,C}:-1.55605158453;RFX1:-1.56952287066;ZNF384:-1.59344789929;PATZ1:-1.61649592058;RBPJ:-1.61874896336;TBX4,5:-1.66925794032;MZF1:-1.69242129116;NRF1:-1.70736589658;GFI1:-1.78417178763;NKX2-1,4:-1.79039303151;PBX1:-1.87465823532;TFDP1:-2.0410995313;POU1F1:-2.27462104393
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008489
|accession_numbers=DRX008597;DRR009469;DRZ000894;DRZ002279;CAGE
|library_id=CNhs13646
}}
}}

Revision as of 23:44, 16 October 2013


Name:Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:time courses
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexn/a
ageadult
cell typeHMDM
cell linePrimary
companyNA
collaborationBaillie/Tomoiu/Fisher/Hume
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008489
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0872
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.394
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast1.256
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0.346
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.15
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.338
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage1.077
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.306
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.307
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.279
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.552
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.667
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.346
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.505
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.612
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.346
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.119
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.472
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.346
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.139
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.536
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate1.197
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13646

Jaspar motifP-value
MA0002.23.71377e-4
MA0003.10.125
MA0004.10.211
MA0006.10.618
MA0007.10.143
MA0009.10.165
MA0014.10.539
MA0017.10.00474
MA0018.20.016
MA0019.10.406
MA0024.10.00929
MA0025.10.77
MA0027.10.542
MA0028.10.114
MA0029.10.805
MA0030.10.00848
MA0031.10.23
MA0035.20.982
MA0038.10.0342
MA0039.20.913
MA0040.10.953
MA0041.10.821
MA0042.10.509
MA0043.10.033
MA0046.10.384
MA0047.20.568
MA0048.10.461
MA0050.14.0256e-5
MA0051.10.00297
MA0052.10.702
MA0055.10.807
MA0057.10.441
MA0058.10.0647
MA0059.10.0867
MA0060.12.53478e-8
MA0061.10.00979
MA0062.20.376
MA0065.20.00185
MA0066.10.00606
MA0067.10.338
MA0068.10.00242
MA0069.10.559
MA0070.10.267
MA0071.10.111
MA0072.10.53
MA0073.10.269
MA0074.10.142
MA0076.10.0589
MA0077.10.736
MA0078.10.771
MA0079.20.727
MA0080.25.32743e-14
MA0081.10.00388
MA0083.10.706
MA0084.10.15
MA0087.10.504
MA0088.10.707
MA0090.10.136
MA0091.10.14
MA0092.10.243
MA0093.10.206
MA0099.20.0689
MA0100.10.341
MA0101.10.0918
MA0102.20.0235
MA0103.10.217
MA0104.20.316
MA0105.16.96406e-5
MA0106.10.659
MA0107.10.0321
MA0108.20.058
MA0111.10.395
MA0112.22.87431e-5
MA0113.10.208
MA0114.10.0288
MA0115.10.358
MA0116.11.98288e-4
MA0117.10.87
MA0119.10.288
MA0122.10.711
MA0124.10.487
MA0125.10.727
MA0131.10.269
MA0135.10.584
MA0136.11.77376e-7
MA0137.20.574
MA0138.20.232
MA0139.10.314
MA0140.10.874
MA0141.10.0185
MA0142.10.042
MA0143.10.0533
MA0144.10.403
MA0145.10.115
MA0146.10.0875
MA0147.10.428
MA0148.10.816
MA0149.10.0164
MA0150.10.0906
MA0152.10.758
MA0153.10.0415
MA0154.10.00245
MA0155.10.381
MA0156.10.105
MA0157.10.763
MA0159.10.00379
MA0160.10.0406
MA0162.10.338
MA0163.11.4025e-7
MA0164.10.916
MA0258.10.00146
MA0259.10.752



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13646

Novel motifP-value
10.082
100.0711
1000.774
1010.349
1020.848
1030.0676
1040.965
1050.378
1060.00569
1070.0917
1080.634
1090.0741
110.0545
1100.117
1110.00398
1120.0297
1130.917
1140.00808
1150.721
1160.532
1170.186
1180.38
1190.035
120.852
1200.201
1210.516
1220.906
1230.226
1240.25
1250.124
1260.307
1270.099
1280.0162
1290.168
130.104
1300.731
1310.831
1320.647
1330.978
1340.64
1350.0368
1360.81
1370.152
1380.378
1390.034
140.448
1400.0267
1410.542
1420.851
1430.0617
1440.506
1450.184
1460.788
1470.844
1480.0161
1490.131
150.0882
1500.464
1510.517
1520.153
1530.8
1540.913
1550.157
1560.86
1570.753
1580.602
1590.377
160.168
1600.0644
1610.279
1620.778
1630.908
1640.205
1650.324
1660.951
1670.226
1680.582
1690.00541
170.107
180.131
190.161
20.693
200.982
210.461
220.232
230.165
240.226
250.569
260.0214
270.152
280.804
290.199
30.0817
300.841
310.533
320.111
330.398
340.377
350.305
360.0278
370.101
380.152
390.469
40.718
400.0674
410.129
420.587
430.0992
440.0225
450.526
460.0809
470.234
480.242
490.137
50.326
500.91
510.304
520.273
530.488
540.309
550.116
560.576
570.316
580.296
590.0598
60.513
600.0462
610.292
620.163
630.23
640.228
650.0606
660.797
670.176
680.583
690.28
70.228
700.00843
710.0445
720.239
730.0987
740.691
750.0954
760.643
770.129
780.12
790.054
80.0603
800.623
810.181
820.0347
830.342
840.779
850.00695
860.209
870.203
880.63
890.0733
90.313
900.0445
910.468
920.107
930.487
940.0173
950.154
960.0858
970.782
980.0778
990.737



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13646


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:13317-143A5&oldid=3077688"