FFCP PHASE1:Hg19::chr10:32735123..32735172,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221016 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26533 | |||
|TSSclassifier=strong | |||
|UniProt=E9PM55 | |||
|association_with_transcript=46bp_to_ENST00000496320_5end | |||
|description=CAGE_peak_2_at_CCDC7_5end | |||
|id=chr10:32735123..32735172,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.11e-14!53;CL:0000051!1.11e-14!53;CL:0000838!1.64e-14!52;CL:0000791!5.46e-12!18;CL:0000789!5.46e-12!18;CL:0002420!5.46e-12!18;CL:0002419!5.46e-12!18;CL:0000790!5.46e-12!18;CL:0000084!5.40e-10!25;CL:0000827!5.40e-10!25;CL:0000625!2.35e-08!11 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.08e-13;18!CL:0000789;1.08e-13;18!CL:0002419;1.08e-13;18!CL:0000084;1.00e-11;25!CL:0000542;1.79e-09;53!CL:0000625;2.37e-09;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.96e-16,53;CL:0000051,6.96e-16,53;CL:0000838,1.09e-15,52;CL:0000791,1.79e-13,18;CL:0000789,1.79e-13,18;CL:0002420,1.79e-13,18;CL:0002419,1.79e-13,18;CL:0000790,1.79e-13,18;CL:0000084,4.58e-11,25;CL:0000827,4.58e-11,25;CL:0000625,2.53e-09,11;CL:0000988,9.65e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;1.08e-13;18!CL:0000051;1.79e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.26e-18!115;UBERON:0001049!5.28e-16!57;UBERON:0005068!5.28e-16!57;UBERON:0006241!5.28e-16!57;UBERON:0007135!5.28e-16!57;UBERON:0002616!9.33e-14!59;UBERON:0002780!1.39e-12!41;UBERON:0001890!1.39e-12!41;UBERON:0006240!1.39e-12!41;UBERON:0003080!1.55e-12!42;UBERON:0000955!2.97e-12!69;UBERON:0006238!2.97e-12!69;UBERON:0002020!2.53e-10!34;UBERON:0003528!2.53e-10!34;UBERON:0002791!7.45e-10!33;UBERON:0001893!7.52e-10!34;UBERON:0001017!8.78e-10!82;UBERON:0001869!5.81e-09!32;UBERON:0005743!9.79e-09!86;UBERON:0002346!2.41e-08!90;UBERON:0003075!2.50e-08!86;UBERON:0007284!2.50e-08!86;UBERON:0000073!5.22e-08!94;UBERON:0001016!5.22e-08!94;UBERON:0000956!7.80e-07!25;UBERON:0000203!7.80e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.60e-10;41!UBERON:0001890;9.60e-10;41!UBERON:0000073;1.61e-08;53!UBERON:0002616;1.61e-08;53!UBERON:0003528;2.92e-08;34!UBERON:0002020;2.92e-08;34!UBERON:0002791;3.11e-08;32!UBERON:0001893;4.94e-08;34!UBERON:0001869;8.32e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.82e-20,114;UBERON:0001049,2.15e-16,56;UBERON:0005068,2.15e-16,56;UBERON:0006241,2.15e-16,56;UBERON:0007135,2.15e-16,56;UBERON:0000073,7.23e-15,53;UBERON:0002616,7.23e-15,53;UBERON:0002780,5.80e-13,41;UBERON:0001890,5.80e-13,41;UBERON:0003080,5.80e-13,41;UBERON:0006240,5.80e-13,41;UBERON:0000955,1.29e-12,68;UBERON:0006238,1.29e-12,68;UBERON:0003528,2.03e-10,34;UBERON:0002020,2.03e-10,34;UBERON:0001017,6.01e-10,81;UBERON:0001893,6.57e-10,34;UBERON:0002346,6.77e-10,86;UBERON:0003075,7.57e-10,82;UBERON:0007284,7.57e-10,82;UBERON:0002791,2.07e-09,32;UBERON:0001016,5.34e-09,89;UBERON:0001869,6.29e-09,32;UBERON:0003056,3.41e-07,61 | |||
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| |||
|short_description=p2@CCDC7 | |||
}} |
Revision as of 02:30, 11 January 2014
Short description: | p2@CCDC7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCDC7_5end |
Coexpression cluster: | NA |
Association with transcript: | 46bp_to_ENST00000496320_5end |
EntrezGene: | CCDC7 |
HGNC: | 26533 |
UniProt: | E9PM55 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.96e-16 | 53 |
common lymphoid progenitor | 6.96e-16 | 53 |
lymphoid lineage restricted progenitor cell | 1.09e-15 | 52 |
mature alpha-beta T cell | 1.79e-13 | 18 |
alpha-beta T cell | 1.79e-13 | 18 |
immature T cell | 1.79e-13 | 18 |
mature T cell | 1.79e-13 | 18 |
immature alpha-beta T cell | 1.79e-13 | 18 |
T cell | 4.58e-11 | 25 |
pro-T cell | 4.58e-11 | 25 |
CD8-positive, alpha-beta T cell | 2.53e-09 | 11 |
hematopoietic cell | 9.65e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.82e-20 | 114 |
neural tube | 2.15e-16 | 56 |
neural rod | 2.15e-16 | 56 |
future spinal cord | 2.15e-16 | 56 |
neural keel | 2.15e-16 | 56 |
regional part of nervous system | 7.23e-15 | 53 |
regional part of brain | 7.23e-15 | 53 |
regional part of forebrain | 5.80e-13 | 41 |
forebrain | 5.80e-13 | 41 |
anterior neural tube | 5.80e-13 | 41 |
future forebrain | 5.80e-13 | 41 |
brain | 1.29e-12 | 68 |
future brain | 1.29e-12 | 68 |
brain grey matter | 2.03e-10 | 34 |
gray matter | 2.03e-10 | 34 |
central nervous system | 6.01e-10 | 81 |
telencephalon | 6.57e-10 | 34 |
neurectoderm | 6.77e-10 | 86 |
neural plate | 7.57e-10 | 82 |
presumptive neural plate | 7.57e-10 | 82 |
regional part of telencephalon | 2.07e-09 | 32 |
nervous system | 5.34e-09 | 89 |
cerebral hemisphere | 6.29e-09 | 32 |
pre-chordal neural plate | 3.41e-07 | 61 |