FFCP PHASE1:Hg19::chr17:40647654..40647668,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-216bp_to_AF085842_5end | |||
|description=CAGE_peak_1_at_AF085842_5end | |||
|id=chr17:40647654..40647668,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000235;1.34e-15;6!CL:0002567;1.32e-08;3!CL:0000511;7.34e-07;1!CL:0002625;7.34e-07;1!CL:0000216;7.34e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,3.25e-15,6;CL:0002567,1.02e-08,3;CL:0000511,4.78e-07,1;CL:0002625,4.78e-07,1;CL:0000216,4.78e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0010227;7.34e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;2.50e-08;3!DOID:127;2.50e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,1.23e-08,3;DOID:127,1.23e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0001049!7.49e-19!57;UBERON:0005068!7.49e-19!57;UBERON:0006241!7.49e-19!57;UBERON:0007135!7.49e-19!57;UBERON:0002616!2.53e-15!59;UBERON:0002780!2.65e-15!41;UBERON:0001890!2.65e-15!41;UBERON:0006240!2.65e-15!41;UBERON:0003080!1.46e-14!42;UBERON:0001017!3.14e-14!82;UBERON:0005743!5.92e-14!86;UBERON:0001893!1.54e-13!34;UBERON:0000955!2.09e-13!69;UBERON:0006238!2.09e-13!69;UBERON:0002020!4.35e-13!34;UBERON:0003528!4.35e-13!34;UBERON:0002791!5.72e-13!33;UBERON:0001869!1.45e-12!32;UBERON:0000073!2.42e-12!94;UBERON:0001016!2.42e-12!94;UBERON:0003075!2.56e-11!86;UBERON:0007284!2.56e-11!86;UBERON:0001950!3.79e-11!20;UBERON:0002346!7.32e-11!90;UBERON:0002619!3.79e-10!22;UBERON:0003056!6.38e-10!61;UBERON:0007023!2.61e-09!115;UBERON:0000956!2.95e-09!25;UBERON:0000203!2.95e-09!25;UBERON:0000033!7.06e-08!123;UBERON:0000153!5.31e-07!129;UBERON:0007811!5.31e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.47e-12;20!UBERON:0002619;3.49e-11;22!UBERON:0002791;7.77e-10;32!UBERON:0001869;7.77e-10;32!UBERON:0000956;8.64e-10;25!UBERON:0000203;8.64e-10;25!UBERON:0001893;3.84e-09;34!UBERON:0003528;1.46e-08;34!UBERON:0002020;1.46e-08;34!UBERON:0001871;7.19e-08;6!UBERON:0002079;7.34e-07;1!UBERON:0001874;7.34e-07;1!UBERON:0003112;7.34e-07;1!UBERON:0001136;7.34e-07;1!UBERON:0001343;7.34e-07;1!UBERON:0011158;7.34e-07;1!UBERON:0004910;7.34e-07;1!UBERON:0004813;7.34e-07;1!UBERON:0003128;7.34e-07;1!UBERON:0001703;7.34e-07;1!UBERON:0002241;7.34e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.74e-12,20;UBERON:0002619,2.54e-11,22;UBERON:0000956,6.55e-10,25;UBERON:0000203,6.55e-10,25;UBERON:0002791,8.33e-10,32;UBERON:0001869,8.33e-10,32;UBERON:0000955,3.15e-09,68;UBERON:0006238,3.15e-09,68;UBERON:0003528,3.54e-09,34;UBERON:0002020,3.54e-09,34;UBERON:0001893,3.54e-09,34;UBERON:0000073,1.23e-08,53;UBERON:0002616,1.23e-08,53;UBERON:0001049,4.33e-08,56;UBERON:0005068,4.33e-08,56;UBERON:0006241,4.33e-08,56;UBERON:0007135,4.33e-08,56;UBERON:0001871,9.34e-08,6;UBERON:0002780,1.90e-07,41;UBERON:0001890,1.90e-07,41;UBERON:0003080,1.90e-07,41;UBERON:0006240,1.90e-07,41;UBERON:0001017,1.99e-07,81;UBERON:0001136,4.78e-07,1;UBERON:0001343,4.78e-07,1;UBERON:0004910,4.78e-07,1;UBERON:0005154,4.78e-07,1;UBERON:0005295,4.78e-07,1;UBERON:0004813,4.78e-07,1;UBERON:0005297,4.78e-07,1;UBERON:0005294,4.78e-07,1;UBERON:0010141,4.78e-07,1;UBERON:0005891,4.78e-07,1;UBERON:0002079,6.38e-07,1 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0,0,0.893922188854576,0.872338524100369,0,0,0,0.982935746006035,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0.487932798790507,0,0.408001382488506,0.313454721478088,0,0.136874425072884,0.125542639594803,0.382067028739756,0.164201178899891,0,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0.217010870715852,0.895661896959697,0.32389366601898,0.257575567634187,0.145398238779565,0,0.242584061187816,0,0.822335776043652,0,0,0.256160706529101,0.236482229888585,0,0,0,0,0.818718450173537,0.224723484445085,0,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0.502497330513487,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0.182664153764634,0,0,0,0,0.400395987036012,0.574752439954483,0,0,1.1384259382189,0.587237189370939,0.382273228125229,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.973269740605272,0.0945348171640679,0,0.087834785693126,0.327447688744282,0,0,0.324547393654683,0.174129737299267,1.32957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0,0,0,0,0,0,0.81014194788176,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0.24666754841716,0,0.134710672069688,0.163461903113459,0,0,0,0.312160076830321,0,0.298897361103602,0,0,0,0,0.122834317311768,0.309977343527296,0,0.494533858557114,0,0.718618141816238,0,0.125118519871964,0,0,0.612975591598039,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.600182192168805,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0.252433774244115,0,0.323292113637624,0,0.10075209822764,0.339121184620975,0,0,0,0.121973706129595,0.397589304964456,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0.721879481669586,0.473227200159376,0.168584690078102,0,0.110293972732394,0.435758888184812,0,0.269662616320329,0.392442930250692,0.38474715694639,0,0,0,0,0,0.982827216677626,0,0.441463099414651,0.614942192715568,0.171567810298526,0.329250856225877,0,0.100528972411631,0,0,1.03993478527958,0,0.231860809950154,0,0.288732895522148,0.462985512576611,0.190254152234598,0,0.858486162094873,0.738651018262192,0.234004265139238,1.0404181360211,0,0.335964256397719,0,0,0,0,0,0.264145302039678,0,0,0.12624243342638,0.126995788584338,0,2.34434894420094,1.71072446022705,0.514137463516618,2.70308752059526,0.285826432630578,0.112131084345361,0.43596006883328,0.07333828582095,0,0,0,0.531876233169741,0,0,0,0,0.142977993658148,0.542621605391443,0.823240336780769,0,0,0,1.20575750823834,0,0.199945982364114,2.43247561282381,1.00451418286425,8.43335757932127,0.239624855491583,0,0,0.579125226670317,0,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0.637938751653163,0,2.99161459204025,0.414415513436035,0.24538298343828,0.500170521059677,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0,0.256278298511402,0,0.321707842287215,0,0,0,0,0.519254429183621,0,0.362578348774867,0.40101294060657,0.184161977871793,0.114814448164607,0.182091168006717,0.262248829918848,0,0.462092022626489,0,0,0.316654886678627,0,0.170093705276516,0,0,0,0,0.254876273045038,0,0.223874754722178,0.438519753291869,0.784306353074702,0,0.328014645699706,0,0,0.183138929636687,0.165018999841176,0,0.650060246036521,1.6068392984416,0,0,0,0,0.214840489736547,0,0,0.0890320356467374,0,0,0.127612712494584,0.30347334256665,0,0.31481234683064,0,0.308033580176089,0,0,0.37064843820784,0.143124886741991,0,0,0,0,0,0,0,0.359744915166629,0.54907405947211,0,0.202182481573316,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0,0,0,0.0962221127255121,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0.427296284509893,0,0,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0.23874448473769,0,0,0,0.562677665642051,0,0,0,0.19924798825107,0.276283915531148,0,0,0.123084805461069,0,0.179736702294654,0,0.511572370226872,0,0,0,1.93866549219044,1.39152147242777,0,0,0.0874599999961957,0,0,0,0,1.03423011972439,0,0.520874984799877,0.885741385813839,0.482385754501632,1.52581736317083,0.442317039724898,0.591095237907095,0,0,0.278847488557207,0.153900517007594,0.227884111694002,0,0.0897576444097721,0.108647371922008,0.31900115973192,0.183195186803725,0,0,0.156980256395025,0.166211681900156,0,0,0.335643173951685,0.569261198172555,0,1.47698645169619,0.163232808159148,0,0,0,0.0884575645033392,1.22206028986725,0.296521128680622,0.247127877893006,0,0.471807930864739,0,0.468528891450678,0,0.19566461893209,0.485560759068186,0,1.20990716048664,0.61214552326098,0.126373159256976,0,0.311064574191741,0,0,0,0,0,0.138674673013139,0.694238953340524,0,0,0,0.171986032471617,0.19351266257817,0.073089317086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| |||
|short_description=p1@AF085842 | |||
}} |
Revision as of 15:28, 20 January 2014
Short description: | p1@AF085842 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AF085842_5end |
Coexpression cluster: | NA |
Association with transcript: | -216bp_to_AF085842_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 3.25e-15 | 6 |
light melanocyte | 1.02e-08 | 3 |
androgen binding protein secreting cell | 4.78e-07 | 1 |
seminiferous tubule epithelial cell | 4.78e-07 | 1 |
Sertoli cell | 4.78e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
neocortex | 1.74e-12 | 20 |
regional part of cerebral cortex | 2.54e-11 | 22 |
cerebral cortex | 6.55e-10 | 25 |
pallium | 6.55e-10 | 25 |
regional part of telencephalon | 8.33e-10 | 32 |
cerebral hemisphere | 8.33e-10 | 32 |
brain | 3.15e-09 | 68 |
future brain | 3.15e-09 | 68 |
brain grey matter | 3.54e-09 | 34 |
gray matter | 3.54e-09 | 34 |
telencephalon | 3.54e-09 | 34 |
regional part of nervous system | 1.23e-08 | 53 |
regional part of brain | 1.23e-08 | 53 |
neural tube | 4.33e-08 | 56 |
neural rod | 4.33e-08 | 56 |
future spinal cord | 4.33e-08 | 56 |
neural keel | 4.33e-08 | 56 |
temporal lobe | 9.34e-08 | 6 |
regional part of forebrain | 1.90e-07 | 41 |
forebrain | 1.90e-07 | 41 |
anterior neural tube | 1.90e-07 | 41 |
future forebrain | 1.90e-07 | 41 |
central nervous system | 1.99e-07 | 81 |
mesothelium | 4.78e-07 | 1 |
seminiferous tubule of testis | 4.78e-07 | 1 |
epithelium of male gonad | 4.78e-07 | 1 |
epithelial cord | 4.78e-07 | 1 |
sex cord | 4.78e-07 | 1 |
seminiferous tubule epithelium | 4.78e-07 | 1 |
testis sex cord | 4.78e-07 | 1 |
genital ridge | 4.78e-07 | 1 |
primitive sex cord of indifferent gonad | 4.78e-07 | 1 |
coelomic epithelium | 4.78e-07 | 1 |
left cardiac atrium | 6.38e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 1.23e-08 | 3 |
leiomyoma | 1.23e-08 | 3 |