FFCP PHASE1:Hg19::chr6:35310312..35310359,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5467 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9235 | |||
|TSSclassifier=strong | |||
|UniProt=Q03181,E9PE18,B7Z3W1,B4E3V3,F1D8S7 | |||
|association_with_transcript=0bp_to_ENST00000360694,ENST00000418635,ENST00000444397,ENST00000448077,NM_001171818,NM_001171819,NM_001171820,NM_006238,NM_177435,uc003okl.2,uc003okm.2,uc003okn.2,uc011dtb.1,uc011dtc.1_5end | |||
|description=CAGE_peak_1_at_PPARD_5end | |||
|id=chr6:35310312..35310359,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.51e-20!140;CL:0002057!2.71e-19!42;CL:0002031!9.38e-19!124;CL:0002087!7.90e-18!119;CL:0000766!1.50e-17!76;CL:0000860!9.01e-17!45;CL:0000557!1.59e-14!71;CL:0000839!1.46e-13!70;CL:0002009!6.66e-13!65;CL:0002194!1.85e-12!63;CL:0000576!1.85e-12!63;CL:0000040!1.85e-12!63;CL:0000559!1.85e-12!63;CL:0002032!3.87e-10!165;CL:0000837!3.87e-10!165;CL:0000037!8.53e-10!172;CL:0000566!8.53e-10!172;CL:0000988!1.11e-09!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.47e-19;33!CL:0002057;6.47e-19;33!CL:0000473;2.85e-16;39!CL:0000234;2.85e-16;39!CL:0000576;2.22e-11;48!CL:0000766;9.24e-11;69!CL:0002087;3.84e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.71e-22,136;CL:0002031,8.70e-21,120;CL:0000766,3.03e-20,72;CL:0002087,7.56e-20,115;CL:0000473,1.22e-19,48;CL:0000234,1.22e-19,48;CL:0000860,2.71e-19,42;CL:0002057,2.71e-19,42;CL:0000557,5.29e-17,67;CL:0000839,6.02e-16,66;CL:0002009,2.51e-15,61;CL:0002194,7.08e-15,59;CL:0000576,7.08e-15,59;CL:0000040,7.08e-15,59;CL:0000559,7.08e-15,59;CL:0002032,2.76e-11,161;CL:0000837,2.76e-11,161;CL:0000988,6.61e-11,177;CL:0000037,6.83e-11,168;CL:0000763,9.44e-07,108;CL:0000049,9.44e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.30e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.04e-17!102;UBERON:0003061!5.04e-17!102;UBERON:0002193!2.27e-15!112;UBERON:0007023!5.49e-15!115;UBERON:0002371!1.46e-14!80;UBERON:0001474!1.61e-14!86;UBERON:0004765!3.33e-12!101;UBERON:0001434!3.33e-12!101;UBERON:0001049!3.56e-11!57;UBERON:0005068!3.56e-11!57;UBERON:0006241!3.56e-11!57;UBERON:0007135!3.56e-11!57;UBERON:0002616!8.15e-10!59;UBERON:0003075!2.43e-09!86;UBERON:0007284!2.43e-09!86;UBERON:0002405!3.00e-09!115;UBERON:0003081!6.47e-09!216;UBERON:0002780!1.30e-08!41;UBERON:0001890!1.30e-08!41;UBERON:0006240!1.30e-08!41;UBERON:0002346!1.47e-08!90;UBERON:0002204!2.74e-08!167;UBERON:0003080!4.57e-08!42;UBERON:0000955!7.21e-08!69;UBERON:0006238!7.21e-08!69;UBERON:0001893!6.49e-07!34;UBERON:0003056!9.43e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.85e-07;41!UBERON:0001890;7.85e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.46e-19,98;UBERON:0003061,3.46e-19,98;UBERON:0002193,2.85e-17,108;UBERON:0002371,7.53e-17,76;UBERON:0001474,1.08e-16,82;UBERON:0004765,1.38e-15,90;UBERON:0002405,4.99e-15,93;UBERON:0007023,1.05e-14,114;UBERON:0001434,2.13e-14,100;UBERON:0001049,9.54e-12,56;UBERON:0005068,9.54e-12,56;UBERON:0006241,9.54e-12,56;UBERON:0007135,9.54e-12,56;UBERON:0000073,5.09e-11,53;UBERON:0002616,5.09e-11,53;UBERON:0003075,2.72e-10,82;UBERON:0007284,2.72e-10,82;UBERON:0003081,5.00e-10,203;UBERON:0002204,8.51e-10,167;UBERON:0002346,2.03e-09,86;UBERON:0002780,1.30e-08,41;UBERON:0001890,1.30e-08,41;UBERON:0003080,1.30e-08,41;UBERON:0006240,1.30e-08,41;UBERON:0000955,2.93e-08,68;UBERON:0006238,2.93e-08,68;UBERON:0003056,1.91e-07,61;UBERON:0001893,6.49e-07,34 | |||
|phase1_expression=3.99692434395225,5.35251309727458,7.18867460889453,8.00586386825043,6.25745532198203,6.10636966870258,5.06599756336621,4.42203911398782,8.61912573059467,4.66894479352867,23.7252397110625,7.64544802455603,10.0231451726812,8.78741106016331,10.6047160232933,2.6893005858071,4.82155622419182,2.92124036154949,4.39139518911456,17.8525534211342,18.9720642857155,10.3440058087769,7.15589967827642,5.33810257784248,6.27713197974014,8.17623441503079,9.60576896564365,7.71365656874057,22.0283995035386,9.97956435052753,19.6616476611417,8.27479102031034,11.1446189947953,7.02532619316897,7.35938405512865,8.53015394924529,1.46800219667424,25.4837887924664,31.4854782528122,24.3052175201754,8.2848725468772,12.3079593087212,7.98484259665978,20.0649569515799,19.2716731281293,21.5899814457156,19.5240391000775,26.3147448333969,24.1570969298181,25.3169305243492,32.0200883161376,27.9049031268531,19.6505038019873,24.5284179761854,33.8566216485854,17.8830222565474,18.0118059038178,17.3037083022715,18.6711174346251,23.7487480036309,26.2128221577607,20.4507806115764,21.9410023383795,23.4423612792982,34.8251086354301,33.4757282567772,34.2552236947566,21.6073852120799,29.2030434315313,28.4517386563703,26.6375781158682,31.6718766949306,29.4310020320023,5.91514801673437,11.6932364980774,9.22498040236854,14.2657361556049,11.1130900702715,16.072558669708,6.55529310604872,6.36533367037088,6.57590953552682,7.03984977845291,14.7457425040775,16.011166569544,5.9742231159311,12.8126715851524,18.3920780785435,15.8650769468367,17.1729675816366,28.4606484554724,26.4256735216922,20.2604810906371,7.93027971474155,16.8152568894461,2.63384084775077,23.60517241366,19.2575273747091,15.6257139239627,9.69681673265933,14.9924242651452,17.5175688121851,13.6378709885538,10.4725829472063,12.9626599288928,10.6336269400138,13.5401931882508,7.42929654408916,7.41338281091306,9.37296056240954,8.5668505513613,11.302320343667,20.9084054058505,23.8111336999845,17.7710390468461,10.3111501854785,12.2630557952615,10.3088233644789,14.4221224451117,13.061181987288,14.3238359848412,6.65316431113862,18.0690142893327,17.0222192835376,12.4930726552346,11.6020853501568,11.4957919568947,9.27391018833769,11.2324882229073,15.9306844271079,9.75227465255847,0.670700859703636,5.24236503558474,6.14446559053763,10.5280961233537,4.63508860674636,3.9764297352555,11.1926020169606,7.6573201902895,3.32594096193846,6.49977414129133,12.4430121722827,9.83597278389864,7.78647329847302,5.51730569212962,5.22389211897802,6.78085598646212,4.5313218618015,2.28797964312051,4.45749001595478,5.36658499890104,7.74211135595512,5.55424802572151,7.34900324501212,5.87299210693868,6.60283300656162,5.01587919688345,5.16833518338658,5.69226020298736,7.02913286805807,5.23678112241891,9.12326526862215,3.41686880567437,5.8826092855339,4.86085168729056,3.75058858793135,5.83776368828041,5.63057402416611,12.2653309972707,8.54339093611316,4.76324534219059,26.3560834872127,7.75560528296651,11.3384453557059,5.96366342034382,6.96467814155189,6.62045904066094,6.88407889797153,6.38403087957043,2.80338800071154,7.47242970107935,5.92002116201184,7.46906484959439,5.52313755485721,4.90385709340376,11.9572367839496,5.18558332031999,14.7622502055292,7.17968176709737,7.98660550162229,7.17353666648645,7.75067691048848,8.90301194024723,10.2529088892641,7.55370433643105,6.5102188175237,6.92282733877629,11.8800285728205,8.90160945402805,26.3946794962028,17.2468354035897,8.92181403956551,10.509955669245,6.64953877162039,4.82875382968922,7.35570709917647,7.21142682751665,3.28953331164061,5.202299434977,7.04739383101272,6.78182083710598,5.70173082560364,8.03809728059823,8.75977836155139,6.88632368426882,6.75105328965065,9.06164147999147,7.32057945307932,7.36399189138395,11.153577920498,6.74518225781567,5.94437379543078,6.95198428472999,5.02478218224572,7.0913991353617,4.01526433544605,4.14710600840624,3.71083351300159,2.67246068599892,5.07939169575315,2.77552935963191,4.37972830890996,6.25798129319264,7.71889125831462,13.8134921352481,4.17931135228781,7.94067429836544,4.49565840151407,4.55178663210875,7.47134192638794,4.19117096383097,5.22910665821775,6.16903609688851,6.87639671616838,7.2601942096378,4.61696588335668,4.42893272774789,8.41450642820675,8.231480226628,14.7008711385542,3.80265104465493,4.91413608338813,4.72631925345123,7.06340959063441,5.78045661152634,5.14703430895577,6.03626569747441,5.62008766288098,5.93120937228622,8.24037161910913,14.3355654336543,14.5590869939141,4.3299402607582,6.95582429850461,3.75707821554629,6.0633908059651,4.1668696131895,5.13686211033415,4.74122638775565,7.72637545885385,12.5570673104573,18.9543454762783,15.1603785534503,2.81201501960331,5.37542810236351,5.81277898693785,5.73174545298229,4.65014301622339,6.51750554580859,20.1991927537337,7.57216532513744,32.757842255442,45.3977853263428,33.7067297248434,11.0486336068374,7.63976851116555,11.7217447210047,1.71072446022705,4.11309970813294,6.30720421472227,7.43148724839503,13.3435990370979,12.2068819273318,6.7471222955274,8.91974838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| |||
|short_description=p1@PPARD | |||
}} |
Revision as of 11:34, 22 January 2014
Short description: | p1@PPARD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPARD_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000360694, ENST00000418635, ENST00000444397, ENST00000448077, NM_001171818, NM_001171819, NM_001171820, NM_006238, NM_177435, uc003okl.2, uc003okm.2, uc003okn.2, uc011dtb.1, uc011dtc.1_5end |
EntrezGene: | PPARD |
HGNC: | 9235 |
UniProt: | Q03181E9PE18B7Z3W1B4E3V3F1D8S7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.71e-22 | 136 |
hematopoietic lineage restricted progenitor cell | 8.70e-21 | 120 |
myeloid leukocyte | 3.03e-20 | 72 |
nongranular leukocyte | 7.56e-20 | 115 |
defensive cell | 1.22e-19 | 48 |
phagocyte | 1.22e-19 | 48 |
classical monocyte | 2.71e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.71e-19 | 42 |
granulocyte monocyte progenitor cell | 5.29e-17 | 67 |
myeloid lineage restricted progenitor cell | 6.02e-16 | 66 |
macrophage dendritic cell progenitor | 2.51e-15 | 61 |
monopoietic cell | 7.08e-15 | 59 |
monocyte | 7.08e-15 | 59 |
monoblast | 7.08e-15 | 59 |
promonocyte | 7.08e-15 | 59 |
hematopoietic oligopotent progenitor cell | 2.76e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.76e-11 | 161 |
hematopoietic cell | 6.61e-11 | 177 |
hematopoietic stem cell | 6.83e-11 | 168 |
myeloid cell | 9.44e-07 | 108 |
common myeloid progenitor | 9.44e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.46e-19 | 98 |
blood island | 3.46e-19 | 98 |
hemolymphoid system | 2.85e-17 | 108 |
bone marrow | 7.53e-17 | 76 |
bone element | 1.08e-16 | 82 |
skeletal element | 1.38e-15 | 90 |
immune system | 4.99e-15 | 93 |
adult organism | 1.05e-14 | 114 |
skeletal system | 2.13e-14 | 100 |
neural tube | 9.54e-12 | 56 |
neural rod | 9.54e-12 | 56 |
future spinal cord | 9.54e-12 | 56 |
neural keel | 9.54e-12 | 56 |
regional part of nervous system | 5.09e-11 | 53 |
regional part of brain | 5.09e-11 | 53 |
neural plate | 2.72e-10 | 82 |
presumptive neural plate | 2.72e-10 | 82 |
lateral plate mesoderm | 5.00e-10 | 203 |
musculoskeletal system | 8.51e-10 | 167 |
neurectoderm | 2.03e-09 | 86 |
regional part of forebrain | 1.30e-08 | 41 |
forebrain | 1.30e-08 | 41 |
anterior neural tube | 1.30e-08 | 41 |
future forebrain | 1.30e-08 | 41 |
brain | 2.93e-08 | 68 |
future brain | 2.93e-08 | 68 |
pre-chordal neural plate | 1.91e-07 | 61 |
telencephalon | 6.49e-07 | 34 |