FFCP PHASE1:Mm9::chr5:21850488..21850499,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=19699|HGNC=|MCL_coexpression_id=367|UniProt=E9QQ32,Q60841|association_with_transcript=8bp_to_ENSMUST00000062372,ENSMUST00000160707,ENSMUST00000162427,ENSMUST00000162622,ENSMUST00000162637_5end|description=CAGE_peak_2_at_Reln_5end|id=chr5:21850488..21850499,-|ontology_enrichment_celltype=CL:0000117!2.24e-12!23;CL:0000337!2.24e-12!23;CL:0000540!8.28e-11!33;CL:0000047!8.28e-11!33;CL:0000031!8.28e-11!33;CL:0000404!8.28e-11!33;CL:0000221!7.21e-09!44;CL:0000133!7.21e-09!44;CL:0002319!9.65e-09!43;CL:0000393!8.95e-07!39;CL:0000211!8.95e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.00e-15,23;CL:0000337,1.00e-15,23;CL:0000540,7.95e-12,33;CL:0000047,7.95e-12,33;CL:0000031,7.95e-12,33;CL:0000404,7.95e-12,33;CL:0000221,4.95e-10,44;CL:0000133,4.95e-10,44;CL:0002319,7.27e-10,43;CL:0000393,1.58e-08,39;CL:0000211,1.58e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.10e-21!102;UBERON:0000924!1.10e-21!102;UBERON:0006601!1.10e-21!102;UBERON:0002346!7.80e-20!71;UBERON:0003075!7.80e-20!71;UBERON:0007284!7.80e-20!71;UBERON:0000073!1.34e-18!75;UBERON:0001016!1.34e-18!75;UBERON:0000033!5.32e-18!63;UBERON:0001017!9.05e-18!73;UBERON:0005743!9.05e-18!73;UBERON:0002020!1.97e-17!34;UBERON:0003056!9.88e-17!49;UBERON:0001049!6.61e-16!52;UBERON:0005068!6.61e-16!52;UBERON:0006241!6.61e-16!52;UBERON:0007135!6.61e-16!52;UBERON:0002791!6.00e-14!29;UBERON:0003528!6.00e-14!29;UBERON:0001893!6.00e-14!29;UBERON:0000955!8.47e-14!50;UBERON:0006238!8.47e-14!50;UBERON:0002616!3.70e-13!49;UBERON:0003080!8.49e-12!40;UBERON:0002780!2.95e-11!39;UBERON:0001890!2.95e-11!39;UBERON:0006240!2.95e-11!39;UBERON:0000956!5.24e-10!21;UBERON:0001869!5.24e-10!21;UBERON:0000203!5.24e-10!21;UBERON:0000025!2.86e-09!114;UBERON:0004111!1.01e-08!122;UBERON:0000468!3.65e-08!333;UBERON:0002619!4.29e-08!17;UBERON:0007811!6.67e-07!86;UBERON:0002021!6.68e-07!10;UBERON:0000411!6.68e-07!10;UBERON:0001950!6.68e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.04e-23,64;UBERON:0003075,2.04e-23,64;UBERON:0007284,2.04e-23,64;UBERON:0004121,7.54e-23,95;UBERON:0000924,7.54e-23,95;UBERON:0006601,7.54e-23,95;UBERON:0002020,4.35e-22,34;UBERON:0001016,9.70e-21,75;UBERON:0001017,1.06e-19,73;UBERON:0010371,1.56e-19,73;UBERON:0000073,1.76e-19,54;UBERON:0003056,3.63e-19,49;UBERON:0001049,7.01e-19,52;UBERON:0005068,7.01e-19,52;UBERON:0006241,7.01e-19,52;UBERON:0007135,7.01e-19,52;UBERON:0003528,1.57e-17,29;UBERON:0002791,1.57e-17,29;UBERON:0001893,1.57e-17,29;UBERON:0000955,3.82e-15,47;UBERON:0006238,3.82e-15,47;UBERON:0002616,2.42e-14,46;UBERON:0010314,2.56e-13,92;UBERON:0003080,6.02e-13,40;UBERON:0000956,2.23e-12,21;UBERON:0001869,2.23e-12,21;UBERON:0000203,2.23e-12,21;UBERON:0002780,2.85e-12,39;UBERON:0001890,2.85e-12,39;UBERON:0006240,2.85e-12,39;UBERON:0002619,6.98e-10,17;UBERON:0000025,7.35e-09,114;UBERON:0002021,1.45e-08,10;UBERON:0000411,1.45e-08,10;UBERON:0001950,1.45e-08,10;UBERON:0000970,8.81e-08,9;UBERON:0000019,8.81e-08,9;UBERON:0000047,8.81e-08,9;UBERON:0010312,8.81e-08,9;UBERON:0004088,8.81e-08,9;UBERON:0002104,8.81e-08,9;UBERON:0001456,8.81e-08,9;UBERON:0003072,8.81e-08,9;UBERON:0004128,8.81e-08,9;UBERON:0003071,8.81e-08,9;UBERON:0004111,1.72e-07,122;UBERON:0003076,6.76e-07,12;UBERON:0003057,6.76e-07,12|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0.0874204024189974,0.999329285446988,2.02475267389826,1.39912375625629,0.157731082679119,0,0,2.12608225377674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,1.1665793944457,0,0,0,0,0,0,0,0,12.5436205732951,8.46385566835253,6.97214543856797,0,0,0,0,0,0.898800331555214,1.92109152660777,3.42175720617976,3.51015439662396,3.78584930432488,11.4260393761521,5.96345060569357,2.9397791811589,1.82106394934649,2.75765635983006,1.10115880999389,2.17068474744819,2.61131106535614,6.72620067423989,6.31264740856627,5.73004707612436,2.79182999001381,3.37657566019008,1.22238598221448,10.606629077052,9.25415925194169,8.57437450796383,2.19605960666234,2.72057616384428,0.289864488701678,2.58127163094416,1.3599426674155,0.539703191637817,1.29955283489534,0.896053774194671,0.421333260395256,0,0,0,1.26759077799012,0,0,0,0,0,0,1.02765491747154,0.258937883647172,0.148442139064825,1.38788261412909,1.52232739156071,1.61430848079241,1.50722640552623,0.587943535678524,0.125666591329675,0,0,0,0.485300549842228,0.220841518460394,0,0,25.7647101370161,23.6674778699204,0,0,0,0,5.39246301857362,8.23501085073528,5.15182843662744,4.51943232499919,5.37002460393694,1.87009240103604,3.73154905055843,1.01839363850316,0.248813941220186,0.505445516867349,2.94618598241064,4.55421550369463,3.44853156650209,4.68161537493908,4.52114453507145,7.55205140579739,5.12454881139399,7.12133106653939,6.46758426847539,0,0,0,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0,0,0.308534225774757,0.465067889500816,0.804820204198858,0.233530684734339,0,0.164167464079095,0.162137619091711,0.292399974850665,0,0.134206418760372,1.89260953707715,6.99751364179134,0,0,0.426576501070468,0.232236671860439,0.644337306610467,0,0.444756087689741,0.570676878337677,0,0.494096864172033,0,0.198956472041151,0,0.898819408654221,0.216138049874694,0,0.948339504765408,1.71372768914593,0,1.62921062276251,1.93952487167626,1.68325967736765,0.379419222745544,0,0.156998727841375,0,0.889357881261447,2.66952169145751,1.76903095601883,2.9232074610031,3.04290182082754,2.65294875727659,3.31013607315846,2.01387296215567,1.13494658742525,3.29473695825698,7.18841032636773,5.20997326735905,4.99260276983297,2.77836765741823,1.07638448113147,0.964887042726734,0.369506380333209,0,0.325929952884052,0,0,0,0.238043640886014,0.780534591431195,0,0,0.318909537314974,0.163863314715738,0,0.289298117163023,0,0,0.491764273019036,1.37968373152366,2.88991061978026,2.22702204525186,0,0.504941854408746,0.631016438832513,0,0.430846795465598,1.43381278771531,1.78238939265915,2.54768877709949,0.404810701674894,0.292255857911312,1.58115111178609,9.3183181762324,0.709700426041343,0.712262414669021,1.14020871547503,0.494910368917606,0,0.242780636154981,0.604647113929502,0.377210159511796,0.295301892880773,0.922305443831782,1.29214146584111,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0,0.900305470156551,0.517434735131018,0.214337035031592,0.886701168211368,0.178368817602071,0.329098041204242,0,0,0,0.220528398054962,0.65954501176592,0,0.241251699712623,0.358117032009409,0.328281799490123,0,2.41052892613663,0.683483523191411,0.412773735926445,0,1.69531611304222,0.956859594047176,0.686334519619568,0,0,0,0,0.474503990371703,0.406638934253697,0.216010681643603,0,0,0.269728692769641,0.909188012978695,0.26175594198403,0.129614973291793,0,0.56369293868419,0.149516546043979,0,1.55560950675238,0.516639293910924,0.844780627453891,1.17357238645754,2.3436789271911,2.20204623293993,1.20792060413003,0.576060012515731,0,0.202725215290164,0.616265742988964,0,0,0,0,0,0,0,0,0,0,0,0.906921534460845,0,0,0,0.386379188064381,0.187682475451182,0.549454872801795,0.857473516316263,0,6.7770221114048,6.44455331110048,6.87474616127276,5.67115501734169,2.74033007908257,4.5323633843382,4.72515750162264,7.20513925158753,4.53142408984205,4.14208249401456,0,3.19219898720825,2.39027048055788,0.486213434136588,1.46729213839588,0.367687016900028,0.888986911206461,1.03017528619447,1.28367683836726,2.52697211763797,0.50695859978048,1.32038438970253,1.40462261204824,1.92075457214608,1.09127391015665,1.90517476513229,1.62238056322798,2.12200142510076,1.23625770240992,1.47198920134397,0.685738504770831,0.532427418478012,1.43061713968393,2.18019624948493,1.59985946706062,1.94613598150856,1.28049581010941,0.526139422875686,1.22223702461276,1.68342681497322,1.77952527186261,1.57607171800902,0.818462086339379,1.85924209423159,1.54325288784913,1.99848462350357,1.87145286756327,1.71896843238639,1.91288332068843,1.54413993383661,0.695603506861264|short_description=p2@Reln}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:19699 | |||
|HGNC= | |||
|MCL_coexpression_id=367 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9QQ32,uniprot:Q60841 | |||
|association_with_transcript=8bp_to_ENSMUST00000062372,ENSMUST00000160707,ENSMUST00000162427,ENSMUST00000162622,ENSMUST00000162637_5end | |||
|cluster_id=chr5:21850488..21850499,- | |||
|description=CAGE_peak_2_at_Reln_5end | |||
|id=chr5:21850488..21850499,- | |||
|ontology_enrichment_celltype=CL:0000117!2.24e-12!23;CL:0000337!2.24e-12!23;CL:0000540!8.28e-11!33;CL:0000047!8.28e-11!33;CL:0000031!8.28e-11!33;CL:0000404!8.28e-11!33;CL:0000221!7.21e-09!44;CL:0000133!7.21e-09!44;CL:0002319!9.65e-09!43;CL:0000393!8.95e-07!39;CL:0000211!8.95e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.00e-15,23;CL:0000337,1.00e-15,23;CL:0000540,7.95e-12,33;CL:0000047,7.95e-12,33;CL:0000031,7.95e-12,33;CL:0000404,7.95e-12,33;CL:0000221,4.95e-10,44;CL:0000133,4.95e-10,44;CL:0002319,7.27e-10,43;CL:0000393,1.58e-08,39;CL:0000211,1.58e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.10e-21!102;UBERON:0000924!1.10e-21!102;UBERON:0006601!1.10e-21!102;UBERON:0002346!7.80e-20!71;UBERON:0003075!7.80e-20!71;UBERON:0007284!7.80e-20!71;UBERON:0000073!1.34e-18!75;UBERON:0001016!1.34e-18!75;UBERON:0000033!5.32e-18!63;UBERON:0001017!9.05e-18!73;UBERON:0005743!9.05e-18!73;UBERON:0002020!1.97e-17!34;UBERON:0003056!9.88e-17!49;UBERON:0001049!6.61e-16!52;UBERON:0005068!6.61e-16!52;UBERON:0006241!6.61e-16!52;UBERON:0007135!6.61e-16!52;UBERON:0002791!6.00e-14!29;UBERON:0003528!6.00e-14!29;UBERON:0001893!6.00e-14!29;UBERON:0000955!8.47e-14!50;UBERON:0006238!8.47e-14!50;UBERON:0002616!3.70e-13!49;UBERON:0003080!8.49e-12!40;UBERON:0002780!2.95e-11!39;UBERON:0001890!2.95e-11!39;UBERON:0006240!2.95e-11!39;UBERON:0000956!5.24e-10!21;UBERON:0001869!5.24e-10!21;UBERON:0000203!5.24e-10!21;UBERON:0000025!2.86e-09!114;UBERON:0004111!1.01e-08!122;UBERON:0000468!3.65e-08!333;UBERON:0002619!4.29e-08!17;UBERON:0007811!6.67e-07!86;UBERON:0002021!6.68e-07!10;UBERON:0000411!6.68e-07!10;UBERON:0001950!6.68e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.04e-23,64;UBERON:0003075,2.04e-23,64;UBERON:0007284,2.04e-23,64;UBERON:0004121,7.54e-23,95;UBERON:0000924,7.54e-23,95;UBERON:0006601,7.54e-23,95;UBERON:0002020,4.35e-22,34;UBERON:0001016,9.70e-21,75;UBERON:0001017,1.06e-19,73;UBERON:0010371,1.56e-19,73;UBERON:0000073,1.76e-19,54;UBERON:0003056,3.63e-19,49;UBERON:0001049,7.01e-19,52;UBERON:0005068,7.01e-19,52;UBERON:0006241,7.01e-19,52;UBERON:0007135,7.01e-19,52;UBERON:0003528,1.57e-17,29;UBERON:0002791,1.57e-17,29;UBERON:0001893,1.57e-17,29;UBERON:0000955,3.82e-15,47;UBERON:0006238,3.82e-15,47;UBERON:0002616,2.42e-14,46;UBERON:0010314,2.56e-13,92;UBERON:0003080,6.02e-13,40;UBERON:0000956,2.23e-12,21;UBERON:0001869,2.23e-12,21;UBERON:0000203,2.23e-12,21;UBERON:0002780,2.85e-12,39;UBERON:0001890,2.85e-12,39;UBERON:0006240,2.85e-12,39;UBERON:0002619,6.98e-10,17;UBERON:0000025,7.35e-09,114;UBERON:0002021,1.45e-08,10;UBERON:0000411,1.45e-08,10;UBERON:0001950,1.45e-08,10;UBERON:0000970,8.81e-08,9;UBERON:0000019,8.81e-08,9;UBERON:0000047,8.81e-08,9;UBERON:0010312,8.81e-08,9;UBERON:0004088,8.81e-08,9;UBERON:0002104,8.81e-08,9;UBERON:0001456,8.81e-08,9;UBERON:0003072,8.81e-08,9;UBERON:0004128,8.81e-08,9;UBERON:0003071,8.81e-08,9;UBERON:0004111,1.72e-07,122;UBERON:0003076,6.76e-07,12;UBERON:0003057,6.76e-07,12 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0.0874204024189974,0.999329285446988,2.02475267389826,1.39912375625629,0.157731082679119,0,0,2.12608225377674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,1.1665793944457,0,0,0,0,0,0,0,0,12.5436205732951,8.46385566835253,6.97214543856797,0,0,0,0,0,0.898800331555214,1.92109152660777,3.42175720617976,3.51015439662396,3.78584930432488,11.4260393761521,5.96345060569357,2.9397791811589,1.82106394934649,2.75765635983006,1.10115880999389,2.17068474744819,2.61131106535614,6.72620067423989,6.31264740856627,5.73004707612436,2.79182999001381,3.37657566019008,1.22238598221448,10.606629077052,9.25415925194169,8.57437450796383,2.19605960666234,2.72057616384428,0.289864488701678,2.58127163094416,1.3599426674155,0.539703191637817,1.29955283489534,0.896053774194671,0.421333260395256,0,0,0,1.26759077799012,0,0,0,0,0,0,1.02765491747154,0.258937883647172,0.148442139064825,1.38788261412909,1.52232739156071,1.61430848079241,1.50722640552623,0.587943535678524,0.125666591329675,0,0,0,0.485300549842228,0.220841518460394,0,0,25.7647101370161,23.6674778699204,0,0,0,0,5.39246301857362,8.23501085073528,5.15182843662744,4.51943232499919,5.37002460393694,1.87009240103604,3.73154905055843,1.01839363850316,0.248813941220186,0.505445516867349,2.94618598241064,4.55421550369463,3.44853156650209,4.68161537493908,4.52114453507145,7.55205140579739,5.12454881139399,7.12133106653939,6.46758426847539,0,0,0,0,0.278047249225598,0,0.205782136407943,0,0,0,0,0.414251545071004,0.234526059981096,0.36012412292203,0,0,0.308534225774757,0.465067889500816,0.804820204198858,0.233530684734339,0,0.164167464079095,0.162137619091711,0.292399974850665,0,0.134206418760372,1.89260953707715,6.99751364179134,0,0,0.426576501070468,0.232236671860439,0.644337306610467,0,0.444756087689741,0.570676878337677,0,0.494096864172033,0,0.198956472041151,0,0.898819408654221,0.216138049874694,0,0.948339504765408,1.71372768914593,0,1.62921062276251,1.93952487167626,1.68325967736765,0.379419222745544,0,0.156998727841375,0,0.889357881261447,2.66952169145751,1.76903095601883,2.9232074610031,3.04290182082754,2.65294875727659,3.31013607315846,2.01387296215567,1.13494658742525,3.29473695825698,7.18841032636773,5.20997326735905,4.99260276983297,2.77836765741823,1.07638448113147,0.964887042726734,0.369506380333209,0,0.325929952884052,0,0,0,0.238043640886014,0.780534591431195,0,0,0.318909537314974,0.163863314715738,0,0.289298117163023,0,0,0.491764273019036,1.37968373152366,2.88991061978026,2.22702204525186,0,0.504941854408746,0.631016438832513,0,0.430846795465598,1.43381278771531,1.78238939265915,2.54768877709949,0.404810701674894,0.292255857911312,1.58115111178609,9.3183181762324,0.709700426041343,0.712262414669021,1.14020871547503,0.494910368917606,0,0.242780636154981,0.604647113929502,0.377210159511796,0.295301892880773,0.922305443831782,1.29214146584111,0.363533729477506,0.356497378384721,0.316036757935816,0,0,0,0.900305470156551,0.517434735131018,0.214337035031592,0.886701168211368,0.178368817602071,0.329098041204242,0,0,0,0.220528398054962,0.65954501176592,0,0.241251699712623,0.358117032009409,0.328281799490123,0,2.41052892613663,0.683483523191411,0.412773735926445,0,1.69531611304222,0.956859594047176,0.686334519619568,0,0,0,0,0.474503990371703,0.406638934253697,0.216010681643603,0,0,0.269728692769641,0.909188012978695,0.26175594198403,0.129614973291793,0,0.56369293868419,0.149516546043979,0,1.55560950675238,0.516639293910924,0.844780627453891,1.17357238645754,2.3436789271911,2.20204623293993,1.20792060413003,0.576060012515731,0,0.202725215290164,0.616265742988964,0,0,0,0,0,0,0,0,0,0,0,0.906921534460845,0,0,0,0.386379188064381,0.187682475451182,0.549454872801795,0.857473516316263,0,6.7770221114048,6.44455331110048,6.87474616127276,5.67115501734169,2.74033007908257,4.5323633843382,4.72515750162264,7.20513925158753,4.53142408984205,4.14208249401456,0,3.19219898720825,2.39027048055788,0.486213434136588,1.46729213839588,0.367687016900028,0.888986911206461,1.03017528619447,1.28367683836726,2.52697211763797,0.50695859978048,1.32038438970253,1.40462261204824,1.92075457214608,1.09127391015665,1.90517476513229,1.62238056322798,2.12200142510076,1.23625770240992,1.47198920134397,0.685738504770831,0.532427418478012,1.43061713968393,2.18019624948493,1.59985946706062,1.94613598150856,1.28049581010941,0.526139422875686,1.22223702461276,1.68342681497322,1.77952527186261,1.57607171800902,0.818462086339379,1.85924209423159,1.54325288784913,1.99848462350357,1.87145286756327,1.71896843238639,1.91288332068843,1.54413993383661,0.695603506861264 | |||
|short_description=p2@Reln | |||
}} |
Revision as of 04:29, 4 August 2015
Short description: | p2@Reln |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Reln_5end |
Coexpression cluster: | MCL_coexpression_mm9:367 |
Association with transcript: | 8bp_to_ENSMUST00000062372, ENSMUST00000160707, ENSMUST00000162427, ENSMUST00000162622, ENSMUST00000162637_5end |
EntrezGene: | 19699 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.00e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.00e-15 | 23 |
neuron | 7.95e-12 | 33 |
neuronal stem cell | 7.95e-12 | 33 |
neuroblast | 7.95e-12 | 33 |
electrically signaling cell | 7.95e-12 | 33 |
ectodermal cell | 4.95e-10 | 44 |
neurectodermal cell | 4.95e-10 | 44 |
neural cell | 7.27e-10 | 43 |
electrically responsive cell | 1.58e-08 | 39 |
electrically active cell | 1.58e-08 | 39 |