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MCL coexpression mm9:1073

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:46125785..46125840,-p1@Cyfip2
Mm9::chr12:88541150..88541234,-p1@Tmed8
Mm9::chr1:59030179..59030198,-p2@Trak2
Mm9::chr7:129432590..129432739,+p1@Prkcb
Mm9::chr7:129775816..129775821,+p@chr7:129775816..129775821
+
Mm9::chr8:26311821..26311931,-p3@Tacc1
Mm9::chrX:7367139..7367155,+p2@Gripap1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0050811GABA receptor binding0.0306723247151294



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system1.77e-1373
regional part of nervous system4.41e-1354
nervous system6.67e-1375
neural tube4.53e-1252
neural rod4.53e-1252
future spinal cord4.53e-1252
neural keel4.53e-1252
neurectoderm1.01e-1164
neural plate1.01e-1164
presumptive neural plate1.01e-1164
brain1.69e-1047
future brain1.69e-1047
gray matter2.32e-1034
ecto-epithelium3.19e-1073
ectoderm-derived structure3.25e-1095
ectoderm3.25e-1095
presumptive ectoderm3.25e-1095
regional part of brain4.79e-1046
anterior neural tube1.61e-0940
regional part of forebrain5.02e-0939
forebrain5.02e-0939
future forebrain5.02e-0939
brain grey matter7.95e-0929
regional part of telencephalon7.95e-0929
telencephalon7.95e-0929
pre-chordal neural plate1.14e-0849
occipital lobe9.98e-0810
visual cortex9.98e-0810
neocortex9.98e-0810
structure with developmental contribution from neural crest2.42e-0792
hematopoietic system2.73e-0745
blood island2.73e-0745
hemolymphoid system3.51e-0748
immune system3.51e-0748
hemopoietic organ7.95e-0729
immune organ7.95e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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