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Coexpression cluster:C119

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Full id: C119_CD4_CD8_Natural_Neutrophils_CD14_Peripheral_CD19



Phase1 CAGE Peaks

Hg19::chr10:104154623..104154634,-p@chr10:104154623..104154634
-
Hg19::chr10:104154653..104154676,-p@chr10:104154653..104154676
-
Hg19::chr10:112651237..112651241,+p@chr10:112651237..112651241
+
Hg19::chr10:11353826..11353848,+p@chr10:11353826..11353848
+
Hg19::chr10:65027874..65027877,-p@chr10:65027874..65027877
-
Hg19::chr10:65027985..65027997,-p@chr10:65027985..65027997
-
Hg19::chr10:92933352..92933355,+p@chr10:92933352..92933355
+
Hg19::chr11:116949703..116949707,-p@chr11:116949703..116949707
-
Hg19::chr11:116965905..116965909,-p@chr11:116965905..116965909
-
Hg19::chr11:11864406..11864410,+p@chr11:11864406..11864410
+
Hg19::chr11:128392930..128392935,-p@chr11:128392930..128392935
-
Hg19::chr11:236540..236552,+p4@PSMD13
Hg19::chr12:107474424..107474428,-p@chr12:107474424..107474428
-
Hg19::chr12:107474519..107474540,-p@chr12:107474519..107474540
-
Hg19::chr12:123007386..123007400,-p13@RSRC2
Hg19::chr12:42600096..42600100,-p@chr12:42600096..42600100
-
Hg19::chr12:46646776..46646779,-p@chr12:46646776..46646779
-
Hg19::chr12:46655021..46655038,-p@chr12:46655021..46655038
-
Hg19::chr12:76459827..76459839,-p@chr12:76459827..76459839
-
Hg19::chr12:76477250..76477254,-p@chr12:76477250..76477254
-
Hg19::chr12:76888073..76888081,-p@chr12:76888073..76888081
-
Hg19::chr12:76897863..76897867,-p@chr12:76897863..76897867
-
Hg19::chr12:76907432..76907453,-p@chr12:76907432..76907453
-
Hg19::chr12:76907895..76907908,-p@chr12:76907895..76907908
-
Hg19::chr12:76923300..76923308,-p@chr12:76923300..76923308
-
Hg19::chr12:76930594..76930597,-p@chr12:76930594..76930597
-
Hg19::chr12:76938616..76938625,-p@chr12:76938616..76938625
-
Hg19::chr12:76947457..76947461,-p@chr12:76947457..76947461
-
Hg19::chr12:96788573..96788578,-p@chr12:96788573..96788578
-
Hg19::chr13:114857364..114857368,-p@chr13:114857364..114857368
-
Hg19::chr13:114857775..114857792,-p@chr13:114857775..114857792
-
Hg19::chr13:42040169..42040200,+p@chr13:42040169..42040200
+
Hg19::chr13:42040361..42040370,+p@chr13:42040361..42040370
+
Hg19::chr13:74666129..74666133,-p@chr13:74666129..74666133
-
Hg19::chr14:102231155..102231159,+p@chr14:102231155..102231159
+
Hg19::chr14:73571851..73571854,+p@chr14:73571851..73571854
+
Hg19::chr14:73572244..73572278,+p13@RBM25
Hg19::chr14:73572416..73572428,+p20@RBM25
Hg19::chr14:91487293..91487316,-p@chr14:91487293..91487316
-
Hg19::chr15:31662268..31662273,+p@chr15:31662268..31662273
+
Hg19::chr15:44830501..44830505,+p@chr15:44830501..44830505
+
Hg19::chr15:49439919..49439923,-p@chr15:49439919..49439923
-
Hg19::chr15:63821398..63821402,+p@chr15:63821398..63821402
+
Hg19::chr15:64090742..64090747,-p@chr15:64090742..64090747
-
Hg19::chr15:64118980..64118984,-p@chr15:64118980..64118984
-
Hg19::chr15:93375332..93375348,+p@chr15:93375332..93375348
+
Hg19::chr16:12005900..12005904,-p@chr16:12005900..12005904
-
Hg19::chr16:16055647..16055651,+p@chr16:16055647..16055651
+
Hg19::chr16:2805077..2805090,+p@chr16:2805077..2805090
+
Hg19::chr16:2805903..2805918,+p4@AB384460
Hg19::chr17:76800704..76800708,-p@chr17:76800704..76800708
-
Hg19::chr18:9235961..9235966,+p@chr18:9235961..9235966
+
Hg19::chr19:19711327..19711332,-p@chr19:19711327..19711332
-
Hg19::chr19:19724251..19724255,-p@chr19:19724251..19724255
-
Hg19::chr19:41837891..41837901,-p@chr19:41837891..41837901
-
Hg19::chr1:100852581..100852585,+p@chr1:100852581..100852585
+
Hg19::chr1:114500490..114500496,+p@chr1:114500490..114500496
+
Hg19::chr1:14078034..14078040,+p@chr1:14078034..14078040
+
Hg19::chr1:151733371..151733385,-p2@MRPL9
Hg19::chr1:91418566..91418570,-p@chr1:91418566..91418570
-
Hg19::chr20:39706609..39706614,+p@chr20:39706609..39706614
+
Hg19::chr20:48532257..48532296,-p3@SPATA2
Hg19::chr21:38742604..38742609,+p@chr21:38742604..38742609
+
Hg19::chr22:31686755..31686762,-p11@PIK3IP1
Hg19::chr2:109349738..109349742,+p@chr2:109349738..109349742
+
Hg19::chr2:144425868..144425873,+p@chr2:144425868..144425873
+
Hg19::chr2:158263168..158263180,-p@chr2:158263168..158263180
-
Hg19::chr2:158263415..158263426,-p@chr2:158263415..158263426
-
Hg19::chr2:201726817..201726830,-p1@AB385095
p1@CU689170
Hg19::chr2:201726882..201726895,-p4@AB385095
p4@CU689170
Hg19::chr2:208395498..208395544,-p@chr2:208395498..208395544
-
Hg19::chr2:238604411..238604415,+p@chr2:238604411..238604415
+
Hg19::chr2:238632708..238632710,+p@chr2:238632708..238632710
+
Hg19::chr2:30374508..30374519,+p@chr2:30374508..30374519
+
Hg19::chr2:42403149..42403151,+p@chr2:42403149..42403151
+
Hg19::chr2:42406418..42406423,+p@chr2:42406418..42406423
+
Hg19::chr2:42435947..42435950,+p@chr2:42435947..42435950
+
Hg19::chr2:42454630..42454634,+p@chr2:42454630..42454634
+
Hg19::chr2:42491268..42491272,+p@chr2:42491268..42491272
+
Hg19::chr2:42509260..42509289,+p@chr2:42509260..42509289
+
Hg19::chr2:43450988..43451009,+p@chr2:43450988..43451009
+
Hg19::chr2:44415551..44415555,+p@chr2:44415551..44415555
+
Hg19::chr2:54131142..54131150,-p@chr2:54131142..54131150
-
Hg19::chr2:54143375..54143380,-p@chr2:54143375..54143380
-
Hg19::chr3:150331479..150331484,+p@chr3:150331479..150331484
+
Hg19::chr3:156871560..156871581,-p8@CCNL1
Hg19::chr3:156876358..156876378,-p@chr3:156876358..156876378
-
Hg19::chr3:24004520..24004523,+p@chr3:24004520..24004523
+
Hg19::chr3:66317021..66317026,+p@chr3:66317021..66317026
+
Hg19::chr4:144437378..144437381,+p@chr4:144437378..144437381
+
Hg19::chr4:26863956..26863961,+p@chr4:26863956..26863961
+
Hg19::chr4:26888828..26888832,+p@chr4:26888828..26888832
+
Hg19::chr4:78718253..78718257,-p@chr4:78718253..78718257
-
Hg19::chr4:78720855..78720860,-p@chr4:78720855..78720860
-
Hg19::chr4:78733020..78733033,-p@chr4:78733020..78733033
-
Hg19::chr4:78737665..78737673,-p@chr4:78737665..78737673
-
Hg19::chr5:133483661..133483664,-p@chr5:133483661..133483664
-
Hg19::chr5:137847883..137847887,-p@chr5:137847883..137847887
-
Hg19::chr5:32592645..32592684,+p@chr5:32592645..32592684
+
Hg19::chr5:78546489..78546494,+p@chr5:78546489..78546494
+
Hg19::chr5:86679492..86679496,-p@chr5:86679492..86679496
-
Hg19::chr5:86688887..86688891,-p1@AF147385
Hg19::chr5:86702025..86702037,-p@chr5:86702025..86702037
-
Hg19::chr5:93347585..93347589,-p@chr5:93347585..93347589
-
Hg19::chr6:108120964..108120970,-p@chr6:108120964..108120970
-
Hg19::chr6:112173933..112173944,-p@chr6:112173933..112173944
-
Hg19::chr6:112180041..112180045,-p5@FYN
Hg19::chr6:112189200..112189211,-p@chr6:112189200..112189211
-
Hg19::chr6:112193883..112193886,-p@chr6:112193883..112193886
-
Hg19::chr6:136595436..136595441,-p@chr6:136595436..136595441
-
Hg19::chr6:136604313..136604317,-p@chr6:136604313..136604317
-
Hg19::chr6:17706964..17706975,-p6@NUP153
Hg19::chr6:36562566..36562576,+p2@SRSF3
Hg19::chr7:104657935..104657939,+p@chr7:104657935..104657939
+
Hg19::chr7:130639708..130639711,-p@chr7:130639708..130639711
-
Hg19::chr7:130682516..130682520,-p@chr7:130682516..130682520
-
Hg19::chr7:130696594..130696598,-p@chr7:130696594..130696598
-
Hg19::chr7:130706575..130706580,-p@chr7:130706575..130706580
-
Hg19::chr7:130713444..130713447,-p@chr7:130713444..130713447
-
Hg19::chr7:130721764..130721768,-p@chr7:130721764..130721768
-
Hg19::chr7:130733252..130733259,-p@chr7:130733252..130733259
-
Hg19::chr7:130736100..130736111,-p@chr7:130736100..130736111
-
Hg19::chr7:130747243..130747247,-p@chr7:130747243..130747247
-
Hg19::chr7:130749095..130749100,-p@chr7:130749095..130749100
-
Hg19::chr7:130750948..130750974,-p@chr7:130750948..130750974
-
Hg19::chr7:130754354..130754358,-p@chr7:130754354..130754358
-
Hg19::chr7:130761947..130761952,-p@chr7:130761947..130761952
-
Hg19::chr7:130762806..130762809,-p@chr7:130762806..130762809
-
Hg19::chr7:130764028..130764045,-p@chr7:130764028..130764045
-
Hg19::chr7:130764433..130764455,-p@chr7:130764433..130764455
-
Hg19::chr7:130776359..130776382,-p@chr7:130776359..130776382
-
Hg19::chr7:130784736..130784755,-p@chr7:130784736..130784755
-
Hg19::chr7:130788982..130788993,-p@chr7:130788982..130788993
-
Hg19::chr7:130791396..130791404,-p@chr7:130791396..130791404
-
Hg19::chr7:130792078..130792092,-p4@FLJ43663
Hg19::chr7:43657259..43657264,+p@chr7:43657259..43657264
+
Hg19::chr7:73103695..73103699,+p@chr7:73103695..73103699
+
Hg19::chr7:73601169..73601173,+p@chr7:73601169..73601173
+
Hg19::chr8:101310423..101310427,-p@chr8:101310423..101310427
-
Hg19::chr8:101319769..101319780,-p@chr8:101319769..101319780
-
Hg19::chr8:38775807..38775820,+p@chr8:38775807..38775820
+
Hg19::chr8:38775907..38775911,+p@chr8:38775907..38775911
+
Hg19::chr9:117132252..117132282,-p@chr9:117132252..117132282
-
Hg19::chr9:4798896..4798900,+p@chr9:4798896..4798900
+
Hg19::chr9:74338045..74338052,-p@chr9:74338045..74338052
-
Hg19::chr9:74361509..74361513,-p@chr9:74361509..74361513
-
Hg19::chr9:74364317..74364322,-p@chr9:74364317..74364322
-
Hg19::chrX:148571595..148571630,-p@chrX:148571595..148571630
-
Hg19::chrX:148575195..148575213,-p@chrX:148575195..148575213
-
Hg19::chrX:153338949..153338953,-p@chrX:153338949..153338953
-
Hg19::chrY:15026667..15026674,+p@chrY:15026667..15026674
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
3.5807160514024e-050.01133296630268863194HIV Infection (Reactome):REACT_6185
3.29930039329266e-050.0113329663026886225{BCLAF1,25} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte1.75e-34136
nongranular leukocyte1.19e-30115
hematopoietic lineage restricted progenitor cell1.47e-27120
hematopoietic stem cell3.05e-25168
angioblastic mesenchymal cell3.05e-25168
hematopoietic cell6.01e-25177
hematopoietic oligopotent progenitor cell3.62e-23161
hematopoietic multipotent progenitor cell3.62e-23161
classical monocyte1.29e-2242
CD14-positive, CD16-negative classical monocyte1.29e-2242
myeloid leukocyte4.15e-1972
defensive cell2.66e-1848
phagocyte2.66e-1848
myeloid lineage restricted progenitor cell1.26e-1466
lymphocyte1.74e-1453
common lymphoid progenitor1.74e-1453
granulocyte monocyte progenitor cell3.15e-1467
lymphoid lineage restricted progenitor cell7.83e-1452
monopoietic cell1.39e-1359
monocyte1.39e-1359
monoblast1.39e-1359
promonocyte1.39e-1359
nucleate cell1.43e-1355
macrophage dendritic cell progenitor8.69e-1361
intermediate monocyte1.40e-109
CD14-positive, CD16-positive monocyte1.40e-109
myeloid cell4.83e-10108
common myeloid progenitor4.83e-10108
CD4-positive, alpha-beta T cell8.63e-096
T cell1.78e-0725
pro-T cell1.78e-0725
mature alpha-beta T cell8.69e-0718
alpha-beta T cell8.69e-0718
immature T cell8.69e-0718
mature T cell8.69e-0718
immature alpha-beta T cell8.69e-0718
circulating cell9.16e-076
Uber Anatomy
Ontology termp-valuen
hematopoietic system1.86e-1698
blood island1.86e-1698
hemolymphoid system3.98e-14108
immune system1.44e-1193
bone marrow3.59e-1176
bone element7.24e-1182
adult organism5.23e-09114
skeletal element6.67e-0990
skeletal system4.24e-08100
neural tube6.22e-0756
neural rod6.22e-0756
future spinal cord6.22e-0756
neural keel6.22e-0756
regional part of nervous system6.80e-0753
regional part of brain6.80e-0753


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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