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{{f5samples
{{f5samples
|id=FF:11548-120B9
|DRA_sample_Accession=CAGE@SAMD00005913
|name=Mesenchymal Stem Cells - Wharton's Jelly, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005913
|sample_id=11548
|accession_numbers=CAGE;DRX008345;DRR009217;DRZ000642;DRZ002027;DRZ011992;DRZ013377
|rna_tube_id=120B9
|accession_numbers_RNASeq=sRNA-Seq;DRX037094;DRR041460;DRZ007102
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|rna_position=B9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569,CL:0002568
|sample_cell_lot=lot:505
|sample_cell_catalog=HMSC.WJ-500
|sample_company=CET
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=umbilical cord
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=?
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=6.9
|rna_concentration=0.27725
|sample_note=
|profile_hcage=CNhs11057,LSID722,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10007,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002568,CL:0002569
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000087,UBERON:0000091,UBERON:0000358,UBERON:0000465,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002331,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003104,UBERON:0003422,UBERON:0004120,UBERON:0005423,UBERON:0005728,UBERON:0007806,UBERON:0008780,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001,FF:0000095
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.55!ZBED1;;chr10:64576105..64576133,-!p1@EGR2!1.54!67.74!EGR2;;chr4:174451370..174451387,-!p1@HAND2!1.53!32.71!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.57!HOXC5;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.13!FOXF1;;chr4:111558135..111558198,-!p2@PITX2!1.34!20.94!PITX2;;chr12:66218836..66218888,+!p1@HMGA2!1.33!184.86!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.32!61.15!GATA6;;chr12:54402745..54402788,+!p1@HOXC8!1.30!18.87!HOXC8;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.52!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!1.27!22.62!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!1.27!20.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!77.18!HMGA2;;chr5:142780189..142780223,-!p6@NR3C1!1.25!16.68!NR3C1;;chr11:61520075..61520136,+!p1@C11orf9!1.22!32.45!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.54!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.55!CREB3L1;;chr12:26277817..26277863,-!p2@BHLHE41!1.11!16.03!BHLHE41;;chr12:66218904..66218913,+!p11@HMGA2!1.10!11.63!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!1.10!11.63!MAFK;;chr19:45971246..45971265,+!p1@FOSB!1.09!209.16!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.33!RUNX1;;chr6:134210243..134210257,+!p1@TCF21!1.05!10.21!TCF21;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.22!HOXB7;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.69!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!0.99!9.95!TCF4;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.38!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.83!PAWR;;chr12:66218923..66218934,+!p14@HMGA2!0.98!8.53!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.97!17.45!BHLHE40;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.27!HOXB6;;chr5:142780237..142780261,-!p7@NR3C1!0.96!8.14!NR3C1;;chr6:1312325..1312340,+!p1@FOXQ1!0.95!13.19!FOXQ1;;chr4:174450089..174450153,-!p2@HAND2!0.95!8.01!HAND2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.95!7.89!SEBOX;;chr3:25469724..25469773,+!p1@RARB!0.94!11.38!RARB;;chr4:111544219..111544240,-!p1@PITX2!0.92!7.24!PITX2;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr12:54402790..54402805,+!p2@HOXC8!0.91!7.11!HOXC8;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.11!HOXB6;;chr3:178789522..178789564,-!p2@ZMAT3!0.90!53.91!ZMAT3;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.98!NFE2L1;;chr1:151032860..151032918,+!p1@MLLT11!0.88!82.73!MLLT11;;chr12:26277956..26277980,-!p1@BHLHE41!0.88!25.08!BHLHE41;;chr17:46675420..46675465,-!p3@HOXB6!0.88!7.63!HOXB6;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.59!TBX20;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.07!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.23!POU2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.86!11.76!NR2F2;;chr2:176969228..176969260,+!p1@HOXD11!0.85!6.08!HOXD11;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.69!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.69!HOXA11;;chr7:26191809..26191890,+!p1@NFE2L3!0.82!29.47!NFE2L3;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.50!ARID5B;;chr21:30671690..30671762,+!p2@BACH1!0.81!19.65!BACH1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.43!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.30!HOXC10;;chr12:26277929..26277955,-!p3@BHLHE41!0.79!7.50!BHLHE41;;chr8:72756063..72756125,-!p1@MSC!0.77!10.60!MSC;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.53!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.91!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.91!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.92!FOXD1;;chr4:174451350..174451363,-!p3@HAND2!0.76!4.78!HAND2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.76!4.78!SEBOX;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.51!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!0.75!12.41!FOXC2;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.01!MECOM;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.41!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.24!ZBTB38;;chr7:77428227..77428242,+!p3@PHTF2!0.73!6.85!PHTF2;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.40!PITX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.72!7.89!CREB3L2;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.50!TCF12;;chr12:54422217..54422239,+!p3@HOXC6!0.72!4.27!HOXC6;;chr1:151032922..151032951,+!p2@MLLT11!0.71!7.24!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.71!6.59!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.70!13.57!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.70!7.76!GATA6;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.69!NR2F2;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.17!ASH2L;;chr18:19749353..19749367,+!p4@GATA6!0.70!4.01!GATA6;;chr9:35732647..35732678,+!p2@CREB3!0.69!24.69!CREB3;;chr10:63809077..63809089,+!p5@ARID5B!0.69!9.31!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.69!8.92!VDR;;chr5:134369905..134369972,-!p1@PITX1!0.69!6.33!PITX1;;chr8:72756267..72756296,-!p4@MSC!0.69!6.08!MSC;;chr7:27196267..27196311,-!p1@HOXA7!0.69!3.88!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!0.69!3.88!HOXA9;;chr3:25469815..25469866,+!p3@RARB!0.69!3.88!RARB;;chr12:54380404..54380433,+!p3@HOXC10!0.69!3.88!HOXC10;;chr7:19157248..19157268,-!p1@TWIST1!0.68!11.51!TWIST1;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.72!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.68!6.46!RUNX1;;chr12:80085120..80085156,-!p14@PAWR!0.68!3.75!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.66!16.29!ZBTB38;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!213.94!NFKBIZ;;chr7:77428149..77428220,+!p1@PHTF2!0.65!41.11!PHTF2;;chr6:91006518..91006570,-!p1@BACH2!0.65!8.92!BACH2;;chr2:185463247..185463263,+!p1@ZNF804A!0.65!6.59!ZNF804A;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr7:27205106..27205134,-!p2@HOXA9!0.65!3.49!HOXA9;;chr11:46299443..46299459,+!p4@CREB3L1!0.65!3.49!CREB3L1;;chr12:115121962..115121987,-!p1@TBX3!0.64!32.96!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.64!16.29!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.64!11.76!RCOR3;;chr7:44143978..44143989,+!p2@AEBP1!0.64!6.72!AEBP1;;chr16:67881588..67881612,-!p2@CENPT!0.64!4.78!CENPT;;chr15:96869222..96869251,+!p18@NR2F2!0.64!4.14!NR2F2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.36!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!0.64!3.36!HOXB9;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.36!SOX11;;chr3:71630980..71631110,-!p3@FOXP1!0.63!13.19!FOXP1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.57!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.98!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.91!NCOR2;;chr8:72756213..72756243,-!p5@MSC!0.63!4.40!MSC;;chr11:34642612..34642646,+!p1@EHF!0.63!3.23!EHF;;chr4:111558118..111558133,-!p5@PITX2!0.63!3.23!PITX2;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.95!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.62!5.30!HMGA2;;chr21:36260463..36260480,-!p9@RUNX1!0.62!4.52!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!0.62!4.01!TFAP2A;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.48!EGR1;;chr8:23540441..23540466,-!p1@NKX3-1!0.61!6.85!NKX3-1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.51!NCOA7;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.36!PRRX1;;chr10:64576035..64576046,-!p2@EGR2!0.60!2.97!EGR2;;chr12:54402729..54402743,+!p3@HOXC8!0.60!2.97!HOXC8;;chr5:142780168..142780186,-!p23@NR3C1!0.60!2.97!NR3C1;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.46!NCOR2;;chr21:36260343..36260402,-!p6@RUNX1!0.59!5.04!RUNX1;;chr12:125002739..125002756,-!p6@NCOR2!0.59!4.65!NCOR2;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.27!HOXB7;;chr6:10412392..10412409,-!p4@TFAP2A!0.59!3.36!TFAP2A;;chr12:80084167..80084197,-!p5@PAWR!0.58!7.50!PAWR;;chr10:63809134..63809145,+!p6@ARID5B!0.58!7.37!ARID5B;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.40!HMGA2;;chr8:72755987..72756002,-!p7@MSC!0.58!2.84!MSC;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.84!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!242.38!TAX1BP3;;chr3:193853927..193853944,+!p1@HES1!0.57!110.92!HES1;;chr3:170075436..170075520,+!p1@SKIL!0.57!72.65!SKIL;;chr7:150945754..150945789,-!p2@SMARCD3!0.57!9.95!SMARCD3;;chr5:142780280..142780294,-!p16@NR3C1!0.57!2.71!NR3C1;;chr2:178128149..178128198,-!p2@NFE2L2!0.56!17.32!NFE2L2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.53!FOXP1;;chr1:8763440..8763460,-!p2@RERE!0.55!15.64!RERE;;chr1:170633348..170633399,+!p2@PRRX1!0.55!3.75!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.59!HOXC9;;chr6:10412576..10412599,-!p5@TFAP2A!0.55!2.59!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.54!70.84!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.54!16.42!ETV1;;chr17:46621937..46621966,-!p2@HOXB2!0.54!7.89!HOXB2;;chr19:57792157..57792170,+!p6@ZNF460!0.54!4.01!ZNF460;;chr12:66218573..66218596,+!p7@HMGA2!0.54!4.01!HMGA2;;chr5:142782823..142782854,-!p3@NR3C1!0.54!3.88!NR3C1;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.46!HOXC9;;chr2:46524537..46524553,+!p1@EPAS1!0.53!305.73!EPAS1;;chr21:36260980..36261011,-!p1@RUNX1!0.53!89.46!RUNX1;;chr12:80084737..80084763,-!p3@PAWR!0.53!10.99!PAWR;;chr17:1959369..1959388,+!p2@HIC1!0.53!7.50!HIC1;;chr8:106330656..106330684,+!p1@ZFPM2!0.53!7.50!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.33!HOXB2;;chr3:178789993..178790049,-!p5@ZMAT3!0.53!3.88!ZMAT3;;chr12:66218443..66218461,+!p8@HMGA2!0.53!3.23!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.10!HOXC4;;chr1:212782094..212782109,+!p1@ATF3!0.52!81.83!ATF3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.52!36.58!ZC3H12A;;chr2:74229812..74229867,+!p1@TET3!0.52!6.98!TET3;;chr15:96874244..96874259,+!p5@NR2F2!0.52!6.59!NR2F2;;chr8:116681123..116681143,-!p4@TRPS1!0.52!5.17!TRPS1;;chr7:27196217..27196246,-!p2@HOXA7!0.52!2.33!HOXA7;;chr3:5022272..5022321,+!p7@BHLHE40!0.52!2.33!BHLHE40;;chr3:141087339..141087387,+!p2@ZBTB38!0.51!29.60!ZBTB38;;chr1:158969752..158969780,+!p6@IFI16!0.51!4.52!IFI16;;chr1:221053049..221053075,+!p3@HLX!0.51!4.40!HLX;;chr12:80084137..80084165,-!p10@PAWR!0.51!3.10!PAWR;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.49!FOSL1;;chr16:69599899..69599919,+!p2@NFAT5!0.50!32.45!NFAT5;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.59!TWIST1;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.04!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.5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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.ctss.bed.gz
|id=FF:11548-120B9
|is_a=EFO:0002091;;FF:0000095
|is_obsolete=
|library_id=CNhs11057
|library_id_phase_based=2:CNhs11057
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11548
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CAGATC.11548
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11548
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CAGATC.11548
|name=Mesenchymal Stem Cells - Wharton's Jelly, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11057,LSID722,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10007,,,
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|rna_box=120
|rna_catalog_number=N/A
|rna_concentration=0.27725
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=B9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=120B9
|rna_weight_ug=6.9
|rnaseq_library_id=SRhi10007.CAGATC
|sample_age=?
|sample_category=primary cells
|sample_cell_catalog=HMSC.WJ-500
|sample_cell_line=
|sample_cell_lot=lot:505
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=CET
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9593461002212e-210!GO:0005737;cytoplasm;2.88749394222872e-182!GO:0043231;intracellular membrane-bound organelle;8.10466844074739e-155!GO:0043227;membrane-bound organelle;1.36061362096104e-154!GO:0043226;organelle;2.91471894463269e-154!GO:0043229;intracellular organelle;6.39324821006528e-154!GO:0044444;cytoplasmic part;2.72804383410536e-136!GO:0044422;organelle part;7.62624130465169e-113!GO:0044446;intracellular organelle part;2.19145772477578e-111!GO:0044238;primary metabolic process;2.27575452527769e-77!GO:0044237;cellular metabolic process;1.56638148118249e-75!GO:0032991;macromolecular complex;3.10503135692384e-75!GO:0005515;protein binding;3.84677611777061e-75!GO:0030529;ribonucleoprotein complex;2.77963734255658e-74!GO:0043170;macromolecule metabolic process;4.39721722154098e-69!GO:0043233;organelle lumen;1.72005864503909e-63!GO:0031974;membrane-enclosed lumen;1.72005864503909e-63!GO:0003723;RNA binding;2.35662453250986e-57!GO:0044428;nuclear part;2.42855065549667e-56!GO:0005739;mitochondrion;2.82325093051399e-56!GO:0031090;organelle membrane;1.94944776250984e-54!GO:0019538;protein metabolic process;1.02611676077356e-50!GO:0005634;nucleus;5.88956716506804e-46!GO:0044260;cellular macromolecule metabolic process;9.89541949523812e-46!GO:0005840;ribosome;1.64762325011502e-45!GO:0033036;macromolecule localization;3.80132366364328e-45!GO:0015031;protein transport;3.80132366364328e-45!GO:0044267;cellular protein metabolic process;5.05083145183749e-45!GO:0006412;translation;7.90332372728089e-44!GO:0009058;biosynthetic process;9.14153528737809e-43!GO:0045184;establishment of protein localization;1.78545637547752e-42!GO:0008104;protein localization;3.19954782730336e-42!GO:0006396;RNA processing;1.25241998554092e-40!GO:0003735;structural constituent of ribosome;5.24164425220179e-40!GO:0016043;cellular component organization and biogenesis;1.26398197279409e-38!GO:0044429;mitochondrial part;3.15036040433378e-38!GO:0009059;macromolecule biosynthetic process;5.46549131468032e-38!GO:0044249;cellular biosynthetic process;2.30748593088153e-36!GO:0031981;nuclear lumen;1.69382496611942e-35!GO:0043234;protein complex;1.71269916689062e-35!GO:0031967;organelle envelope;4.49619993610136e-35!GO:0033279;ribosomal subunit;4.93409503300324e-35!GO:0005829;cytosol;6.04727138106985e-35!GO:0031975;envelope;7.57222003313887e-35!GO:0043283;biopolymer metabolic process;9.12010710583115e-35!GO:0010467;gene expression;1.34699005552262e-33!GO:0046907;intracellular transport;5.54956627439784e-33!GO:0016071;mRNA metabolic process;5.91229322340538e-32!GO:0008380;RNA splicing;1.47321267917699e-30!GO:0006886;intracellular protein transport;9.37914134907905e-30!GO:0006397;mRNA processing;3.96000129584078e-28!GO:0005783;endoplasmic reticulum;2.92671747571326e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.16755694260843e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.77683578894787e-25!GO:0005740;mitochondrial envelope;5.60458335926065e-25!GO:0012505;endomembrane system;6.92881567384435e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.43960224154901e-25!GO:0031966;mitochondrial membrane;1.18539711848887e-23!GO:0019866;organelle inner membrane;1.267309816497e-23!GO:0005743;mitochondrial inner membrane;2.00975907035218e-22!GO:0065003;macromolecular complex assembly;4.54525706959839e-22!GO:0005654;nucleoplasm;4.60794792484027e-22!GO:0006119;oxidative phosphorylation;1.38078771862514e-21!GO:0005681;spliceosome;1.94874110482751e-21!GO:0006457;protein folding;5.985563527275e-21!GO:0051641;cellular localization;1.01492099752436e-20!GO:0044445;cytosolic part;1.06280115810397e-20!GO:0051649;establishment of cellular localization;1.42108144358198e-20!GO:0005794;Golgi apparatus;2.06789103983764e-20!GO:0048770;pigment granule;5.07878859561755e-20!GO:0042470;melanosome;5.07878859561755e-20!GO:0044432;endoplasmic reticulum part;8.7644018890617e-20!GO:0022607;cellular component assembly;2.86495065803921e-19!GO:0006996;organelle organization and biogenesis;4.65710344342969e-19!GO:0044455;mitochondrial membrane part;9.13227223295204e-19!GO:0044451;nucleoplasm part;1.80269504187546e-18!GO:0015934;large ribosomal subunit;2.09933465710798e-18!GO:0015935;small ribosomal subunit;1.75596041208202e-17!GO:0008134;transcription factor binding;1.78652784134891e-17!GO:0016874;ligase activity;2.03869306542113e-17!GO:0000166;nucleotide binding;3.84053155011458e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.97856296639525e-16!GO:0016462;pyrophosphatase activity;3.00989858302519e-16!GO:0043228;non-membrane-bound organelle;3.74866615776313e-16!GO:0043232;intracellular non-membrane-bound organelle;3.74866615776313e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;4.38593677378085e-16!GO:0031980;mitochondrial lumen;6.67159438205684e-16!GO:0005759;mitochondrial matrix;6.67159438205684e-16!GO:0048193;Golgi vesicle transport;8.0676304668744e-16!GO:0017111;nucleoside-triphosphatase activity;9.1651121289641e-16!GO:0022618;protein-RNA complex assembly;1.23644879765329e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.46304393403375e-15!GO:0005746;mitochondrial respiratory chain;4.28447511802358e-15!GO:0006512;ubiquitin cycle;5.32850247576348e-15!GO:0016192;vesicle-mediated transport;1.10584824389764e-14!GO:0006605;protein targeting;1.10584824389764e-14!GO:0051186;cofactor metabolic process;1.25079540689025e-14!GO:0005730;nucleolus;1.9617282262416e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.87587241458002e-14!GO:0043412;biopolymer modification;5.24235034136195e-14!GO:0044265;cellular macromolecule catabolic process;6.06808727961856e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.13375403611423e-14!GO:0003954;NADH dehydrogenase activity;6.13375403611423e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.13375403611423e-14!GO:0051082;unfolded protein binding;7.65466598766828e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;9.6252747166295e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.01187264397723e-13!GO:0008135;translation factor activity, nucleic acid binding;1.10432690183498e-13!GO:0043285;biopolymer catabolic process;1.25572120613954e-13!GO:0016070;RNA metabolic process;1.65219239518531e-13!GO:0044257;cellular protein catabolic process;1.71373829552816e-13!GO:0019941;modification-dependent protein catabolic process;1.73934070832405e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.73934070832405e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.51228818523308e-13!GO:0003676;nucleic acid binding;2.56398967124114e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.56398967124114e-13!GO:0005789;endoplasmic reticulum membrane;4.22343108820249e-13!GO:0005761;mitochondrial ribosome;4.33921394490697e-13!GO:0000313;organellar ribosome;4.33921394490697e-13!GO:0006464;protein modification process;8.27110430254194e-13!GO:0009057;macromolecule catabolic process;1.02276150734859e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.02477052863434e-12!GO:0030163;protein catabolic process;1.17421032534249e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.30288348121214e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.47028854511921e-12!GO:0042773;ATP synthesis coupled electron transport;3.47028854511921e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.01688020550471e-12!GO:0045271;respiratory chain complex I;4.01688020550471e-12!GO:0005747;mitochondrial respiratory chain complex I;4.01688020550471e-12!GO:0044248;cellular catabolic process;4.24004261790967e-12!GO:0003712;transcription cofactor activity;5.17889083598677e-12!GO:0005793;ER-Golgi intermediate compartment;5.62850998581507e-12!GO:0032553;ribonucleotide binding;7.18069843623312e-12!GO:0032555;purine ribonucleotide binding;7.18069843623312e-12!GO:0006732;coenzyme metabolic process;7.7706413571959e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.07396433987711e-11!GO:0017076;purine nucleotide binding;1.4137140830454e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;5.93295078100158e-11!GO:0000375;RNA splicing, via transesterification reactions;5.93295078100158e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.93295078100158e-11!GO:0048523;negative regulation of cellular process;5.9667384215127e-11!GO:0031965;nuclear membrane;8.46527707234756e-11!GO:0012501;programmed cell death;9.97823971067532e-11!GO:0003743;translation initiation factor activity;1.12226609301984e-10!GO:0005635;nuclear envelope;1.1551044030847e-10!GO:0009055;electron carrier activity;1.16810028764787e-10!GO:0009259;ribonucleotide metabolic process;1.366783149247e-10!GO:0006915;apoptosis;2.80258287331201e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.90898768822074e-10!GO:0006259;DNA metabolic process;2.9955833183633e-10!GO:0006163;purine nucleotide metabolic process;3.76511051032051e-10!GO:0009150;purine ribonucleotide metabolic process;4.30646027952396e-10!GO:0042254;ribosome biogenesis and assembly;4.74320757084403e-10!GO:0043687;post-translational protein modification;8.33932289958011e-10!GO:0008565;protein transporter activity;9.18007612331623e-10!GO:0006413;translational initiation;1.0349072984461e-09!GO:0044431;Golgi apparatus part;1.10640524964905e-09!GO:0008219;cell death;1.31320781748039e-09!GO:0016265;death;1.31320781748039e-09!GO:0005788;endoplasmic reticulum lumen;1.51698190048706e-09!GO:0008639;small protein conjugating enzyme activity;1.56175704058501e-09!GO:0006164;purine nucleotide biosynthetic process;2.17705728778049e-09!GO:0016604;nuclear body;2.25509705808957e-09!GO:0019787;small conjugating protein ligase activity;2.29338607842089e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.37420243112195e-09!GO:0004842;ubiquitin-protein ligase activity;2.69489413629775e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.27459984371798e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.27459984371798e-09!GO:0009260;ribonucleotide biosynthetic process;3.38090662871801e-09!GO:0006446;regulation of translational initiation;3.5694106387355e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.64614955227728e-09!GO:0048519;negative regulation of biological process;4.11114164778132e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.12506725991971e-09!GO:0044453;nuclear membrane part;5.81522525765685e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.84222452005451e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.84222452005451e-09!GO:0009141;nucleoside triphosphate metabolic process;6.53719711695143e-09!GO:0006913;nucleocytoplasmic transport;6.82876349692533e-09!GO:0005524;ATP binding;9.73130325881265e-09!GO:0015986;ATP synthesis coupled proton transport;1.02185645263707e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.02185645263707e-08!GO:0030120;vesicle coat;1.12642218926598e-08!GO:0030662;coated vesicle membrane;1.12642218926598e-08!GO:0051169;nuclear transport;1.40499452994796e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.59803136739791e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.59803136739791e-08!GO:0005768;endosome;1.61843389940476e-08!GO:0016881;acid-amino acid ligase activity;1.94246117731744e-08!GO:0032559;adenyl ribonucleotide binding;1.95375844935971e-08!GO:0048475;coated membrane;2.57045129278342e-08!GO:0030117;membrane coat;2.57045129278342e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.58798484604937e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.58798484604937e-08!GO:0009060;aerobic respiration;2.58798484604937e-08!GO:0006399;tRNA metabolic process;3.1934402081601e-08!GO:0016607;nuclear speck;3.33372189537171e-08!GO:0050794;regulation of cellular process;3.54802639692345e-08!GO:0019829;cation-transporting ATPase activity;3.63079621736312e-08!GO:0030554;adenyl nucleotide binding;4.3507245384166e-08!GO:0046034;ATP metabolic process;4.99682151405804e-08!GO:0006366;transcription from RNA polymerase II promoter;5.45324735358765e-08!GO:0043069;negative regulation of programmed cell death;5.7554070257646e-08!GO:0045333;cellular respiration;6.96949404237353e-08!GO:0051188;cofactor biosynthetic process;8.25169860667779e-08!GO:0006461;protein complex assembly;8.51494756813901e-08!GO:0031988;membrane-bound vesicle;8.85845944726967e-08!GO:0017038;protein import;9.4548770649281e-08!GO:0016023;cytoplasmic membrane-bound vesicle;9.99453384661566e-08!GO:0003924;GTPase activity;1.49791475811559e-07!GO:0043067;regulation of programmed cell death;1.60066749261672e-07!GO:0051246;regulation of protein metabolic process;1.61322280084267e-07!GO:0003714;transcription corepressor activity;1.65010904848451e-07!GO:0043066;negative regulation of apoptosis;1.65173894083522e-07!GO:0016887;ATPase activity;1.69965276681817e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.87395096785591e-07!GO:0006754;ATP biosynthetic process;1.91215395857921e-07!GO:0006753;nucleoside phosphate metabolic process;1.91215395857921e-07!GO:0042623;ATPase activity, coupled;1.98828052979784e-07!GO:0007005;mitochondrion organization and biogenesis;2.16632832806945e-07!GO:0065002;intracellular protein transport across a membrane;2.64113710120202e-07!GO:0042981;regulation of apoptosis;2.72407468202782e-07!GO:0000139;Golgi membrane;2.76433675422144e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.58058864600288e-07!GO:0006974;response to DNA damage stimulus;3.66612942708442e-07!GO:0005773;vacuole;4.04157816053473e-07!GO:0009056;catabolic process;4.04157816053473e-07!GO:0006916;anti-apoptosis;4.43092024316447e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.69477597883531e-07!GO:0005643;nuclear pore;5.74036327082626e-07!GO:0005798;Golgi-associated vesicle;5.74036327082626e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.86878690483564e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.86878690483564e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.86878690483564e-07!GO:0007049;cell cycle;6.94412711693402e-07!GO:0006099;tricarboxylic acid cycle;7.19968247434718e-07!GO:0046356;acetyl-CoA catabolic process;7.19968247434718e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.66132093493896e-07!GO:0043038;amino acid activation;8.20026333322512e-07!GO:0006418;tRNA aminoacylation for protein translation;8.20026333322512e-07!GO:0043039;tRNA aminoacylation;8.20026333322512e-07!GO:0004386;helicase activity;1.0634117487323e-06!GO:0051187;cofactor catabolic process;1.22487698192141e-06!GO:0008026;ATP-dependent helicase activity;1.25360818622326e-06!GO:0031982;vesicle;1.30879375059035e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.51226309460371e-06!GO:0009109;coenzyme catabolic process;1.54163841024906e-06!GO:0016564;transcription repressor activity;1.60304554923527e-06!GO:0031410;cytoplasmic vesicle;1.63745403022299e-06!GO:0044440;endosomal part;1.65662471193365e-06!GO:0010008;endosome membrane;1.65662471193365e-06!GO:0008654;phospholipid biosynthetic process;1.93326228125986e-06!GO:0005667;transcription factor complex;1.93815513809458e-06!GO:0016740;transferase activity;1.95545323739238e-06!GO:0005770;late endosome;2.12439279867896e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.13820912909167e-06!GO:0006084;acetyl-CoA metabolic process;2.59812723543901e-06!GO:0031252;leading edge;2.67086977225652e-06!GO:0016491;oxidoreductase activity;2.71282336320969e-06!GO:0009108;coenzyme biosynthetic process;2.81553809331e-06!GO:0000323;lytic vacuole;3.15251852403344e-06!GO:0005764;lysosome;3.15251852403344e-06!GO:0006364;rRNA processing;3.2857487093742e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.49149885563374e-06!GO:0009117;nucleotide metabolic process;3.98212907354604e-06!GO:0016563;transcription activator activity;4.3371859506987e-06!GO:0016853;isomerase activity;4.34689482572967e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.41897859054561e-06!GO:0006752;group transfer coenzyme metabolic process;4.4237106841054e-06!GO:0016072;rRNA metabolic process;4.98298345994172e-06!GO:0046930;pore complex;5.83556506515965e-06!GO:0003713;transcription coactivator activity;6.22018320977432e-06!GO:0005525;GTP binding;6.22623101557279e-06!GO:0006403;RNA localization;7.3791768692532e-06!GO:0050789;regulation of biological process;7.86848163811618e-06!GO:0006613;cotranslational protein targeting to membrane;8.11283987788529e-06!GO:0050657;nucleic acid transport;9.42464004765825e-06!GO:0051236;establishment of RNA localization;9.42464004765825e-06!GO:0050658;RNA transport;9.42464004765825e-06!GO:0016787;hydrolase activity;9.63349095819624e-06!GO:0032446;protein modification by small protein conjugation;9.80064465871802e-06!GO:0045259;proton-transporting ATP synthase complex;1.0212990360187e-05!GO:0006281;DNA repair;1.02620541534875e-05!GO:0006793;phosphorus metabolic process;1.19816888651274e-05!GO:0006796;phosphate metabolic process;1.19816888651274e-05!GO:0016567;protein ubiquitination;1.26909331102313e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.31082425305251e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.31501242346963e-05!GO:0000245;spliceosome assembly;1.40163850502447e-05!GO:0045786;negative regulation of progression through cell cycle;1.4726610352279e-05!GO:0000151;ubiquitin ligase complex;1.88611922032033e-05!GO:0051170;nuclear import;1.90482916989503e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.32869279048273e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.32869279048273e-05!GO:0045454;cell redox homeostasis;2.48833147344139e-05!GO:0051726;regulation of cell cycle;2.48833147344139e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.52233553264883e-05!GO:0009719;response to endogenous stimulus;2.61299334401954e-05!GO:0006606;protein import into nucleus;2.68433877138982e-05!GO:0000074;regulation of progression through cell cycle;2.77062160114599e-05!GO:0016859;cis-trans isomerase activity;3.48919213616759e-05!GO:0051789;response to protein stimulus;3.48919213616759e-05!GO:0006986;response to unfolded protein;3.48919213616759e-05!GO:0030867;rough endoplasmic reticulum membrane;3.53222074312078e-05!GO:0016310;phosphorylation;3.68084240363089e-05!GO:0030133;transport vesicle;3.72965346764666e-05!GO:0032561;guanyl ribonucleotide binding;4.02882741559677e-05!GO:0019001;guanyl nucleotide binding;4.02882741559677e-05!GO:0005762;mitochondrial large ribosomal subunit;4.80677456236117e-05!GO:0000315;organellar large ribosomal subunit;4.80677456236117e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.90331768663197e-05!GO:0008361;regulation of cell size;5.15846603272077e-05!GO:0031324;negative regulation of cellular metabolic process;5.613032679663e-05!GO:0004298;threonine endopeptidase activity;6.21484053919171e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.73510247625647e-05!GO:0003724;RNA helicase activity;7.43826800420327e-05!GO:0005791;rough endoplasmic reticulum;8.37891152885839e-05!GO:0048522;positive regulation of cellular process;9.11146946992432e-05!GO:0043566;structure-specific DNA binding;9.23564504313823e-05!GO:0006612;protein targeting to membrane;9.58125007664219e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.76658367657573e-05!GO:0016049;cell growth;0.000113389868779358!GO:0005769;early endosome;0.000121229509191938!GO:0043021;ribonucleoprotein binding;0.000122090837332733!GO:0044262;cellular carbohydrate metabolic process;0.000122416666760084!GO:0006091;generation of precursor metabolites and energy;0.000125880363309246!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000139362028144463!GO:0007243;protein kinase cascade;0.000146581769754644!GO:0005905;coated pit;0.000146581769754644!GO:0030029;actin filament-based process;0.000147208367659783!GO:0016568;chromatin modification;0.00017351281605397!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000177151597871269!GO:0022402;cell cycle process;0.000183548434834709!GO:0030659;cytoplasmic vesicle membrane;0.000186136921683964!GO:0009892;negative regulation of metabolic process;0.000197189017765686!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000200513836885492!GO:0046474;glycerophospholipid biosynthetic process;0.000204266899263312!GO:0051028;mRNA transport;0.000214345733063465!GO:0008250;oligosaccharyl transferase complex;0.000251002857950175!GO:0043623;cellular protein complex assembly;0.000255872611587452!GO:0001558;regulation of cell growth;0.000273920451255593!GO:0005048;signal sequence binding;0.00029311030975327!GO:0004576;oligosaccharyl transferase activity;0.000293431982149332!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000339846006486814!GO:0030663;COPI coated vesicle membrane;0.000359336427919214!GO:0030126;COPI vesicle coat;0.000359336427919214!GO:0006891;intra-Golgi vesicle-mediated transport;0.000359336427919214!GO:0044433;cytoplasmic vesicle part;0.000378837075847576!GO:0016779;nucleotidyltransferase activity;0.000386290050064488!GO:0019867;outer membrane;0.000390633881981699!GO:0006323;DNA packaging;0.00041436355866062!GO:0005885;Arp2/3 protein complex;0.000419235876136075!GO:0051427;hormone receptor binding;0.000424905410362547!GO:0031968;organelle outer membrane;0.000453183329712107!GO:0046489;phosphoinositide biosynthetic process;0.000497926699807882!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000507961847732832!GO:0000314;organellar small ribosomal subunit;0.000524616288653704!GO:0005763;mitochondrial small ribosomal subunit;0.000524616288653704!GO:0030137;COPI-coated vesicle;0.000547627944515966!GO:0018196;peptidyl-asparagine modification;0.000555995721044271!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000555995721044271!GO:0003697;single-stranded DNA binding;0.000662323274993334!GO:0016044;membrane organization and biogenesis;0.000709060986770721!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000709479979135837!GO:0007264;small GTPase mediated signal transduction;0.000741082438628583!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000750558095046387!GO:0015399;primary active transmembrane transporter activity;0.000750558095046387!GO:0035257;nuclear hormone receptor binding;0.00075753335240858!GO:0012506;vesicle membrane;0.00075753335240858!GO:0046467;membrane lipid biosynthetic process;0.000817872852143049!GO:0051920;peroxiredoxin activity;0.000865283521950778!GO:0030658;transport vesicle membrane;0.000897949036180143!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000924973458460963!GO:0006839;mitochondrial transport;0.000968635332818372!GO:0043284;biopolymer biosynthetic process;0.00104737281456442!GO:0008186;RNA-dependent ATPase activity;0.00109144421707431!GO:0030176;integral to endoplasmic reticulum membrane;0.00110283033603873!GO:0006414;translational elongation;0.0011046216581969!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00126233247958329!GO:0007050;cell cycle arrest;0.0013257289315434!GO:0007040;lysosome organization and biogenesis;0.00132810850076019!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00136900606873066!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00137905826523613!GO:0006626;protein targeting to mitochondrion;0.00140386149256031!GO:0043681;protein import into mitochondrion;0.00142971287055485!GO:0006650;glycerophospholipid metabolic process;0.00150315764461959!GO:0016481;negative regulation of transcription;0.00152620838640869!GO:0008610;lipid biosynthetic process;0.00156374155691131!GO:0030027;lamellipodium;0.00163257239315222!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00177244636623487!GO:0009165;nucleotide biosynthetic process;0.00180253650888688!GO:0007033;vacuole organization and biogenesis;0.0018218429837816!GO:0016126;sterol biosynthetic process;0.00183151313101894!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00183885818091317!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0018948358489262!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0018948358489262!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0018948358489262!GO:0031072;heat shock protein binding;0.00191121648411334!GO:0019222;regulation of metabolic process;0.00191784831199172!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00193816722254777!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00193816722254777!GO:0008092;cytoskeletal protein binding;0.00217704144114441!GO:0003899;DNA-directed RNA polymerase activity;0.00217704144114441!GO:0019899;enzyme binding;0.00217704144114441!GO:0048500;signal recognition particle;0.00226232882222124!GO:0030118;clathrin coat;0.00226235235998103!GO:0045045;secretory pathway;0.00232925061699814!GO:0030134;ER to Golgi transport vesicle;0.00233003665918443!GO:0030660;Golgi-associated vesicle membrane;0.00238093808705688!GO:0003729;mRNA binding;0.00240237290554703!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00246430726267878!GO:0030132;clathrin coat of coated pit;0.00255652262035653!GO:0048471;perinuclear region of cytoplasm;0.00261610694514381!GO:0065007;biological regulation;0.00272095905623225!GO:0005741;mitochondrial outer membrane;0.00275236333496123!GO:0030127;COPII vesicle coat;0.00275426556524553!GO:0012507;ER to Golgi transport vesicle membrane;0.00275426556524553!GO:0019843;rRNA binding;0.00278241575045756!GO:0004004;ATP-dependent RNA helicase activity;0.00282719496254087!GO:0006818;hydrogen transport;0.00302483507268519!GO:0051276;chromosome organization and biogenesis;0.00302640215119!GO:0015992;proton transport;0.00320069177287941!GO:0001726;ruffle;0.00329972717384687!GO:0016363;nuclear matrix;0.00330599370281373!GO:0008047;enzyme activator activity;0.00335724627360072!GO:0006497;protein amino acid lipidation;0.0034796943327264!GO:0005813;centrosome;0.00356629639114356!GO:0007006;mitochondrial membrane organization and biogenesis;0.00382476799312549!GO:0003690;double-stranded DNA binding;0.00382636592497544!GO:0030384;phosphoinositide metabolic process;0.0040578778718836!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0040578778718836!GO:0045047;protein targeting to ER;0.0040578778718836!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00428445464459658!GO:0045893;positive regulation of transcription, DNA-dependent;0.00445635452288742!GO:0006509;membrane protein ectodomain proteolysis;0.00448702813554736!GO:0033619;membrane protein proteolysis;0.00448702813554736!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00451811021669!GO:0042802;identical protein binding;0.00464673032874069!GO:0046519;sphingoid metabolic process;0.0046506160905291!GO:0030521;androgen receptor signaling pathway;0.00472467625466597!GO:0065004;protein-DNA complex assembly;0.00474004164705741!GO:0022890;inorganic cation transmembrane transporter activity;0.00478020637990817!GO:0048518;positive regulation of biological process;0.00483348052358243!GO:0051168;nuclear export;0.00492813747237316!GO:0031901;early endosome membrane;0.00522514452929459!GO:0051087;chaperone binding;0.00548247340355952!GO:0004177;aminopeptidase activity;0.00588044881215457!GO:0016197;endosome transport;0.00601594240680802!GO:0008312;7S RNA binding;0.00605708479863822!GO:0006383;transcription from RNA polymerase III promoter;0.00611130304874277!GO:0005774;vacuolar membrane;0.00650754685703162!GO:0043492;ATPase activity, coupled to movement of substances;0.00655475609721351!GO:0035258;steroid hormone receptor binding;0.00657187514534764!GO:0008139;nuclear localization sequence binding;0.00673733173944095!GO:0007030;Golgi organization and biogenesis;0.00681750118118496!GO:0040008;regulation of growth;0.00685732134337217!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00685771501067767!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00693695927078557!GO:0006672;ceramide metabolic process;0.00695545964762325!GO:0042158;lipoprotein biosynthetic process;0.00698611788468495!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00700363181184621!GO:0033673;negative regulation of kinase activity;0.00724371886573625!GO:0006469;negative regulation of protein kinase activity;0.00724371886573625!GO:0044452;nucleolar part;0.00724371886573625!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00733772789441819!GO:0051252;regulation of RNA metabolic process;0.0076183731406433!GO:0006643;membrane lipid metabolic process;0.00773875938085031!GO:0048468;cell development;0.00779296563741035!GO:0030880;RNA polymerase complex;0.00794350843534611!GO:0000278;mitotic cell cycle;0.00800886439749538!GO:0005815;microtubule organizing center;0.00808228680151978!GO:0045941;positive regulation of transcription;0.00808228680151978!GO:0003746;translation elongation factor activity;0.00811453715711004!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00812153531671086!GO:0051348;negative regulation of transferase activity;0.0083367738875544!GO:0046483;heterocycle metabolic process;0.00862918574125337!GO:0007034;vacuolar transport;0.00877662911096364!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00895680236449871!GO:0006352;transcription initiation;0.00907217526117631!GO:0016251;general RNA polymerase II transcription factor activity;0.0091730126231897!GO:0008033;tRNA processing;0.00923992546124467!GO:0006695;cholesterol biosynthetic process;0.00923992546124467!GO:0006260;DNA replication;0.00951676429856399!GO:0006506;GPI anchor biosynthetic process;0.00959398543784876!GO:0009967;positive regulation of signal transduction;0.00959398543784876!GO:0030119;AP-type membrane coat adaptor complex;0.00987933439344324!GO:0007010;cytoskeleton organization and biogenesis;0.00987933439344324!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00992433910007495!GO:0000059;protein import into nucleus, docking;0.00994145388829445!GO:0031902;late endosome membrane;0.00994145388829445!GO:0051128;regulation of cellular component organization and biogenesis;0.00997222945056238!GO:0032940;secretion by cell;0.0101162494522326!GO:0017166;vinculin binding;0.0106668117275918!GO:0019752;carboxylic acid metabolic process;0.0106715854365048!GO:0006082;organic acid metabolic process;0.0106989382068521!GO:0065009;regulation of a molecular function;0.0108519002618348!GO:0043022;ribosome binding;0.0108519002618348!GO:0006892;post-Golgi vesicle-mediated transport;0.011914810556268!GO:0005869;dynactin complex;0.0121337886101739!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121337886101739!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121337886101739!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0121574861559304!GO:0031543;peptidyl-proline dioxygenase activity;0.0123559352307547!GO:0000049;tRNA binding;0.0123559352307547!GO:0003711;transcription elongation regulator activity;0.0124128275732845!GO:0006505;GPI anchor metabolic process;0.0124730146560009!GO:0000339;RNA cap binding;0.0124926656271326!GO:0015630;microtubule cytoskeleton;0.0125933921218649!GO:0000096;sulfur amino acid metabolic process;0.0127869309768748!GO:0006595;polyamine metabolic process;0.0129909470225974!GO:0030125;clathrin vesicle coat;0.0129909470225974!GO:0030665;clathrin coated vesicle membrane;0.0129909470225974!GO:0050681;androgen receptor binding;0.0129909470225974!GO:0048144;fibroblast proliferation;0.0129909470225974!GO:0048145;regulation of fibroblast proliferation;0.0129909470225974!GO:0048487;beta-tubulin binding;0.0132505710945763!GO:0019798;procollagen-proline dioxygenase activity;0.0135815566946593!GO:0030145;manganese ion binding;0.013618268443261!GO:0031625;ubiquitin protein ligase binding;0.0136397873417863!GO:0007569;cell aging;0.014352878114023!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.014352878114023!GO:0000428;DNA-directed RNA polymerase complex;0.014352878114023!GO:0031418;L-ascorbic acid binding;0.0144329435915113!GO:0030131;clathrin adaptor complex;0.0147130890497497!GO:0016408;C-acyltransferase activity;0.0148545645299455!GO:0000209;protein polyubiquitination;0.0148766765245322!GO:0003756;protein disulfide isomerase activity;0.0149436250468903!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0149436250468903!GO:0005862;muscle thin filament tropomyosin;0.0153921740072192!GO:0044437;vacuolar part;0.0157664802374374!GO:0051329;interphase of mitotic cell cycle;0.01744161795584!GO:0005586;collagen type III;0.0180388964155625!GO:0016272;prefoldin complex;0.0182018245503706!GO:0005581;collagen;0.0182294887990394!GO:0006402;mRNA catabolic process;0.0182585562523529!GO:0008154;actin polymerization and/or depolymerization;0.0190081362259465!GO:0045892;negative regulation of transcription, DNA-dependent;0.0192203565009884!GO:0005765;lysosomal membrane;0.0194036106220267!GO:0006520;amino acid metabolic process;0.0201631438148691!GO:0051540;metal cluster binding;0.0205160028646046!GO:0051536;iron-sulfur cluster binding;0.0205160028646046!GO:0005832;chaperonin-containing T-complex;0.0207149536157846!GO:0008180;signalosome;0.0207959075129043!GO:0051101;regulation of DNA binding;0.0212688285723125!GO:0006607;NLS-bearing substrate import into nucleus;0.0213272040131758!GO:0007265;Ras protein signal transduction;0.0213688538529985!GO:0048146;positive regulation of fibroblast proliferation;0.0219904677223098!GO:0035035;histone acetyltransferase binding;0.0224436584807849!GO:0051539;4 iron, 4 sulfur cluster binding;0.0224553475788134!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0226141395836812!GO:0006740;NADPH regeneration;0.0226141395836812!GO:0006098;pentose-phosphate shunt;0.0226141395836812!GO:0006807;nitrogen compound metabolic process;0.0226141395836812!GO:0022408;negative regulation of cell-cell adhesion;0.0226541277182716!GO:0005096;GTPase activator activity;0.0227509973761923!GO:0001952;regulation of cell-matrix adhesion;0.0227509973761923!GO:0043488;regulation of mRNA stability;0.0227509973761923!GO:0043487;regulation of RNA stability;0.0227509973761923!GO:0005801;cis-Golgi network;0.023057346869866!GO:0030518;steroid hormone receptor signaling pathway;0.0232516077215989!GO:0006289;nucleotide-excision repair;0.0233895946365649!GO:0043433;negative regulation of transcription factor activity;0.0235845622661073!GO:0006790;sulfur metabolic process;0.0237824416718064!GO:0031529;ruffle organization and biogenesis;0.0244622650526305!GO:0005684;U2-dependent spliceosome;0.0248829090146352!GO:0051098;regulation of binding;0.0255543572458831!GO:0006333;chromatin assembly or disassembly;0.0256151704675976!GO:0051287;NAD binding;0.0264591464097973!GO:0030149;sphingolipid catabolic process;0.026472404636435!GO:0030032;lamellipodium biogenesis;0.026612105686252!GO:0015036;disulfide oxidoreductase activity;0.0271810241597399!GO:0030041;actin filament polymerization;0.0271810241597399!GO:0003684;damaged DNA binding;0.0274112916477971!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0274112916477971!GO:0006644;phospholipid metabolic process;0.0274112916477971!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0274112916477971!GO:0015002;heme-copper terminal oxidase activity;0.0274112916477971!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0274112916477971!GO:0004129;cytochrome-c oxidase activity;0.0274112916477971!GO:0006417;regulation of translation;0.0274112916477971!GO:0007021;tubulin folding;0.0275028958125012!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0278092110889183!GO:0033043;regulation of organelle organization and biogenesis;0.0278092110889183!GO:0015631;tubulin binding;0.0280191319196599!GO:0031301;integral to organelle membrane;0.0282388605845582!GO:0006984;ER-nuclear signaling pathway;0.0283313911017993!GO:0007041;lysosomal transport;0.0284617860992381!GO:0006897;endocytosis;0.0287117094960928!GO:0010324;membrane invagination;0.0287117094960928!GO:0008147;structural constituent of bone;0.0288553342644948!GO:0006778;porphyrin metabolic process;0.0292423007104211!GO:0033013;tetrapyrrole metabolic process;0.0292423007104211!GO:0033559;unsaturated fatty acid metabolic process;0.0292496071498277!GO:0006636;unsaturated fatty acid biosynthetic process;0.0292496071498277!GO:0050811;GABA receptor binding;0.0293167706599016!GO:0006354;RNA elongation;0.029625498953251!GO:0006979;response to oxidative stress;0.0300317337014886!GO:0008632;apoptotic program;0.0303045669709888!GO:0008022;protein C-terminus binding;0.0314104838368611!GO:0030833;regulation of actin filament polymerization;0.0315463438238492!GO:0009308;amine metabolic process;0.0315734371993464!GO:0006007;glucose catabolic process;0.0316232158887159!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0316531024125251!GO:0008484;sulfuric ester hydrolase activity;0.0321103471685384!GO:0045936;negative regulation of phosphate metabolic process;0.0327406496377491!GO:0003702;RNA polymerase II transcription factor activity;0.0333190231569036!GO:0004287;prolyl oligopeptidase activity;0.0334194819806276!GO:0015923;mannosidase activity;0.0335599150768508!GO:0006376;mRNA splice site selection;0.0344645754268222!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0344645754268222!GO:0030508;thiol-disulfide exchange intermediate activity;0.0361565196255825!GO:0030433;ER-associated protein catabolic process;0.0362010468812465!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0362010468812465!GO:0008652;amino acid biosynthetic process;0.0365307321013339!GO:0005669;transcription factor TFIID complex;0.0371338178342458!GO:0016860;intramolecular oxidoreductase activity;0.0378111650464518!GO:0005938;cell cortex;0.0378161303004745!GO:0008097;5S rRNA binding;0.0387931051760617!GO:0000287;magnesium ion binding;0.0404543288401861!GO:0001953;negative regulation of cell-matrix adhesion;0.0405726941984319!GO:0031124;mRNA 3'-end processing;0.04071167278108!GO:0045792;negative regulation of cell size;0.0421485164741775!GO:0004674;protein serine/threonine kinase activity;0.0425587385013731!GO:0051325;interphase;0.0428465245997539!GO:0032906;transforming growth factor-beta2 production;0.0433407899529352!GO:0032909;regulation of transforming growth factor-beta2 production;0.0433407899529352!GO:0005975;carbohydrate metabolic process;0.0437195961161419!GO:0003923;GPI-anchor transamidase activity;0.0441763657067646!GO:0016255;attachment of GPI anchor to protein;0.0441763657067646!GO:0042765;GPI-anchor transamidase complex;0.0441763657067646!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0443569902615015!GO:0004656;procollagen-proline 4-dioxygenase activity;0.044445256230118!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.044445256230118!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0454191204150878!GO:0005637;nuclear inner membrane;0.0457332294001928!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0458191391076731!GO:0030984;kininogen binding;0.046287363198763!GO:0004213;cathepsin B activity;0.046287363198763!GO:0050662;coenzyme binding;0.0467281091467707!GO:0031970;organelle envelope lumen;0.0468378570378823!GO:0042168;heme metabolic process;0.0473926513676446!GO:0006950;response to stress;0.0487989943685355!GO:0005850;eukaryotic translation initiation factor 2 complex;0.049028742988425!GO:0043087;regulation of GTPase activity;0.0498225391124901
|sample_id=11548
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=umbilical cord
|top_motifs=HMGA1,2:2.29216472407;TAL1_TCF{3,4,12}:2.0204594457;TEF:1.85728715334;HSF1,2:1.69812906134;FOX{I1,J2}:1.4529556827;HOX{A5,B5}:1.40103884162;XBP1:1.26876873795;MAFB:1.23517160472;EN1,2:1.17308846165;NKX3-1:1.14418499768;MYBL2:1.13917059116;TEAD1:1.10039896141;ADNP_IRX_SIX_ZHX:0.967619985156;DBP:0.960569050586;IKZF1:0.911749326026;GLI1..3:0.905582125293;NFATC1..3:0.900060339785;ATF6:0.898163282506;ESR1:0.897931872659;EVI1:0.880715140483;SPZ1:0.829424506229;NFE2L1:0.792804038643;PAX4:0.775515638656;bHLH_family:0.768800025662;SMAD1..7,9:0.764923461088;HMX1:0.73797132952;SRF:0.719021071063;HES1:0.71884721935;ALX4:0.701231292711;ONECUT1,2:0.694543068727;TP53:0.693326814832;GTF2A1,2:0.682823423602;NFE2L2:0.670057980809;SOX17:0.648102125451;HIF1A:0.640972786585;ZNF238:0.634386731542;MTE{core}:0.607233588865;TFAP2{A,C}:0.601726590568;UFEwm:0.585804799751;NFIX:0.584877791304;STAT5{A,B}:0.579733752661;SREBF1,2:0.571647241752;SOX2:0.56822196076;POU3F1..4:0.535069926608;PAX8:0.504590375834;CRX:0.490791129062;TFCP2:0.487518270967;NR6A1:0.466129668599;RXR{A,B,G}:0.460425482773;LHX3,4:0.460243926718;PRDM1:0.456895554161;GZF1:0.454310066567;TFAP2B:0.437212426958;NHLH1,2:0.422471919594;ALX1:0.418721789681;GFI1B:0.409374126964;NANOG{mouse}:0.395446303535;CDC5L:0.389428452998;TLX2:0.385065206676;MAZ:0.379326711044;ZNF384:0.372864437296;ARID5B:0.371263385758;FOXD3:0.369090253147;HIC1:0.360840006901;KLF4:0.347150855444;GTF2I:0.345661787306;HBP1_HMGB_SSRP1_UBTF:0.339613577386;NR3C1:0.339244099614;ZBTB6:0.336200722117;AHR_ARNT_ARNT2:0.332920517045;EBF1:0.332898755331;XCPE1{core}:0.305517964861;HOX{A4,D4}:0.303634320862;TLX1..3_NFIC{dimer}:0.299806145705;TOPORS:0.296133068716;FOXQ1:0.292720783044;HLF:0.287266239395;PAX6:0.286881153911;POU5F1:0.285347417759;TBX4,5:0.271761777471;SOX5:0.260724403703;ELK1,4_GABP{A,B1}:0.25220307435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.217023382403;ZFP161:0.208246239231;NKX2-1,4:0.20612571837;AIRE:0.19875837661;NKX6-1,2:0.194456662118;MZF1:0.18224288093;GATA4:0.181475655764;HOXA9_MEIS1:0.179472465719;FOS_FOS{B,L1}_JUN{B,D}:0.176330152217;LEF1_TCF7_TCF7L1,2:0.17057655815;HOX{A6,A7,B6,B7}:0.167785865969;FOSL2:0.158284787418;RFX1:0.15662707353;MYFfamily:0.153831933488;BACH2:0.147566781541;FOXP1:0.131978252641;REST:0.124887801707;RUNX1..3:0.118327024168;HAND1,2:0.104918062105;PRRX1,2:0.104693079304;NKX2-3_NKX2-5:0.1003693126;FOX{D1,D2}:0.0809991232699;PPARG:0.0721905159639;RXRA_VDR{dimer}:0.069336134669;DMAP1_NCOR{1,2}_SMARC:0.0631850621919;HNF1A:0.0543140438589;PAX2:0.0491691894629;EGR1..3:0.0480681453357;PATZ1:0.0273186116852;ZNF148:0.0214130792466;ATF2:0.0171432498656;TFAP4:0.0134214106546;TBP:-0.000181842590188;NKX2-2,8:-0.00469982642849;GATA6:-0.030438481471;ZBTB16:-0.0348144942748;ZNF143:-0.0642820655608;NFE2:-0.0671409694338;SP1:-0.0754693365261;TFDP1:-0.0781241149974;STAT2,4,6:-0.0787933807035;ZIC1..3:-0.0804235204801;MED-1{core}:-0.0809116322284;CEBPA,B_DDIT3:-0.0829149172525;FOXM1:-0.0915252278105;MTF1:-0.115205089188;FOXA2:-0.12347932298;NFIL3:-0.135205083086;PAX5:-0.139480706924;NRF1:-0.142283341646;NFKB1_REL_RELA:-0.143108393872;ELF1,2,4:-0.152579354342;NR1H4:-0.157128683522;POU6F1:-0.162863387156;FOXL1:-0.17450354519;PAX1,9:-0.189183769799;JUN:-0.200640741601;MEF2{A,B,C,D}:-0.204405828018;FOXN1:-0.276781407131;FOXO1,3,4:-0.29089092138;ZNF423:-0.299511529892;IRF1,2:-0.308055678427;AR:-0.334676496489;HNF4A_NR2F1,2:-0.350137673132;ESRRA:-0.35704572899;STAT1,3:-0.376485160165;OCT4_SOX2{dimer}:-0.376500226738;GCM1,2:-0.384480333108;FOX{F1,F2,J1}:-0.384691128898;CREB1:-0.397973801948;ETS1,2:-0.413655973472;FOXP3:-0.420511137828;PDX1:-0.424175349949;CDX1,2,4:-0.426321373831;IRF7:-0.428589406573;RORA:-0.436161065049;YY1:-0.438095526188;ATF5_CREB3:-0.447833874161;SPI1:-0.454436298802;PAX3,7:-0.462579312899;PITX1..3:-0.465233564071;RREB1:-0.487049970052;CUX2:-0.48789096596;NKX3-2:-0.49590732286;SNAI1..3:-0.507185924611;NR5A1,2:-0.517464282623;TGIF1:-0.526733545689;PBX1:-0.532386094532;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.544020957247;NANOG:-0.547496593384;SPIB:-0.550820619615;VSX1,2:-0.563467820079;GFI1:-0.566643245149;ATF4:-0.614072908898;ZEB1:-0.614319461783;BPTF:-0.6343493613;POU1F1:-0.641135560708;LMO2:-0.650076079073;MYOD1:-0.657682569981;MYB:-0.75754904766;SOX{8,9,10}:-0.771808882863;RFX2..5_RFXANK_RFXAP:-0.79442307688;BREu{core}:-0.845194993329;IKZF2:-0.8561231265;EP300:-0.887580466888;NFY{A,B,C}:-1.0369226644;E2F1..5:-1.04134256904;T:-1.25368331026;POU2F1..3:-1.25383787458;RBPJ:-1.37992420216
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11548-120B9;search_select_hide=table117:FF:11548-120B9
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:Mesenchymal Stem Cells - Wharton's Jelly, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11057
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stagefetus
sexfemale
age?
cell typemesenchymal stem cell
cell lineNA
companyCET
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005913
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11057 CAGE DRX008345 DRR009217
Accession ID Hg19

Library idBAMCTSS
CNhs11057 DRZ000642 DRZ002027
Accession ID Hg38

Library idBAMCTSS
CNhs11057 DRZ011992 DRZ013377
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005913
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.CAGATC sRNA-Seq DRX037094 DRR041460
Accession ID Hg19

Library idBAMCTSS
SRhi10007.CAGATC DRZ007102


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0292
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.415
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.181
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0372
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle2.92893e-4
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.217
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00118
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0153
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0528
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.809
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.249
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.142
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0249
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0528
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00541
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.531
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0528
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0172
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0999
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.384
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.458
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.38
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.613
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.627
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.487
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11057

Jaspar motifP-value
MA0002.20.382
MA0003.10.933
MA0004.10.281
MA0006.10.264
MA0007.10.608
MA0009.10.00545
MA0014.10.5
MA0017.10.176
MA0018.21.34977e-5
MA0019.10.599
MA0024.12.90397e-11
MA0025.10.0122
MA0027.10.574
MA0028.10.793
MA0029.10.634
MA0030.10.815
MA0031.10.461
MA0035.20.323
MA0038.10.022
MA0039.21.72589e-4
MA0040.10.355
MA0041.10.578
MA0042.10.96
MA0043.10.0191
MA0046.10.327
MA0047.20.474
MA0048.10.0576
MA0050.13.47203e-6
MA0051.10.00792
MA0052.10.00213
MA0055.10.874
MA0057.10.569
MA0058.10.288
MA0059.10.819
MA0060.13.17291e-15
MA0061.10.124
MA0062.20.00141
MA0065.20.0225
MA0066.10.424
MA0067.10.0735
MA0068.10.0631
MA0069.10.0771
MA0070.10.554
MA0071.10.99
MA0072.10.817
MA0073.10.812
MA0074.10.649
MA0076.10.5
MA0077.10.867
MA0078.10.664
MA0079.20.996
MA0080.21.34344e-9
MA0081.10.0131
MA0083.10.0301
MA0084.10.552
MA0087.10.904
MA0088.10.26
MA0090.12.60338e-6
MA0091.10.42
MA0092.10.177
MA0093.10.502
MA0099.20.00317
MA0100.10.128
MA0101.10.334
MA0102.20.714
MA0103.10.002
MA0104.20.0472
MA0105.10.0488
MA0106.10.126
MA0107.10.673
MA0108.20.906
MA0111.10.186
MA0112.20.877
MA0113.10.89
MA0114.10.182
MA0115.10.0326
MA0116.10.00364
MA0117.10.51
MA0119.10.499
MA0122.10.337
MA0124.10.553
MA0125.10.0519
MA0131.10.497
MA0135.10.0625
MA0136.12.63559e-10
MA0137.20.261
MA0138.20.138
MA0139.10.804
MA0140.10.933
MA0141.10.127
MA0142.10.0752
MA0143.10.973
MA0144.10.497
MA0145.10.575
MA0146.10.136
MA0147.10.0751
MA0148.10.882
MA0149.10.905
MA0150.10.424
MA0152.10.199
MA0153.10.905
MA0154.10.081
MA0155.10.274
MA0156.11.49684e-4
MA0157.10.442
MA0159.10.29
MA0160.10.0378
MA0162.10.463
MA0163.10.465
MA0164.10.277
MA0258.10.877
MA0259.10.161



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11057

Novel motifP-value
10.414
100.552
1000.927
1010.645
1020.183
1030.463
1040.915
1050.139
1060.129
1070.305
1080.48
1090.364
110.264
1100.679
1110.182
1120.89
1130.00128
1140.956
1150.22
1160.227
1170.277
1180.271
1190.943
120.174
1200.971
1210.684
1220.18
1230.0805
1240.51
1250.468
1260.29
1270.946
1280.565
1290.188
130.497
1300.769
1310.0515
1320.643
1330.355
1340.317
1350.619
1360.631
1370.253
1380.982
1390.0286
140.0842
1400.464
1410.0433
1420.736
1430.756
1440.4
1450.886
1460.685
1470.326
1480.295
1490.0412
150.948
1500.228
1510.984
1520.0238
1530.189
1540.674
1551.78201e-4
1560.34
1570.681
1580.0077
1590.288
160.164
1600.233
1610.704
1620.388
1630.511
1640.129
1650.872
1660.0515
1670.454
1680.18
1690.75
170.991
180.219
190.715
20.779
200.563
210.843
220.844
230.429
240.843
250.0745
260.256
270.593
280.383
290.718
30.807
300.677
310.986
323.16451e-8
330.643
340.804
350.677
360.377
370.289
380.0534
390.319
40.297
400.198
410.333
420.14
430.404
440.802
450.666
460.516
470.129
480.479
490.0813
50.613
500.936
510.596
520.931
530.333
540.869
550.048
560.566
570.941
580.0209
590.279
60.453
600.322
610.299
620.0795
630.88
640.442
650.243
660.247
670.333
680.351
690.956
70.0582
700.676
710.887
720.542
730.0877
740.336
750.53
760.903
770.88
780.0898
790.0185
80.997
800.614
810.675
820.452
830.898
840.457
850.714
860.953
870.325
880.821
890.349
90.854
900.92
910.89
920.44
930.434
940.816
950.644
960.609
970.138
980.00417
990.046



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11057


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
0002568 (mesenchymal stem cell of Wharton's jelly)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
0000095 (human mesenchymal stem cell of Wharton's jelly sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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