FFCP PHASE1:Hg19::chr12:46766577..46766587,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:46766577..46766587,- to FFCP PHASE1:Hg19::chr12:46766577..46766587,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54407 | |EntrezGene=54407 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13448 | |HGNC=13448 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-21bp_to_ENST00000553252_5end | |||
|cluster_id=chr12:46766577..46766587,- | |||
|description=CAGE_peak_5_at_SLC38A2_5end | |||
|id=chr12:46766577..46766587,- | |||
|ontology_enrichment_celltype=CL:0002319!4.96e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.61e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.70e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.30e-07;82 | |||
|ontology_enrichment_disease=DOID:162!2.30e-20!235;DOID:14566!1.23e-19!239;DOID:0050686!2.33e-13!137;DOID:0050687!2.29e-11!143;DOID:2531!7.22e-11!51;DOID:0060083!7.22e-11!51;DOID:1240!4.23e-10!39;DOID:305!1.34e-08!106;DOID:8692!4.99e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;3.23e-08;39!DOID:8692;9.02e-08;31!DOID:2531;2.36e-07;51!DOID:0060083;2.36e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.97e-20,235;DOID:14566,1.05e-19,239;DOID:0050686,1.81e-13,137;DOID:0050687,2.12e-11,143;DOID:2531,5.63e-11,51;DOID:0060083,5.63e-11,51;DOID:1240,3.79e-10,39;DOID:305,1.16e-08,106;DOID:8692,4.59e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0000073!2.20e-24!94;UBERON:0001016!2.20e-24!94;UBERON:0001017!1.37e-21!82;UBERON:0005743!2.52e-21!86;UBERON:0001049!8.88e-19!57;UBERON:0005068!8.88e-19!57;UBERON:0006241!8.88e-19!57;UBERON:0007135!8.88e-19!57;UBERON:0002780!1.23e-16!41;UBERON:0001890!1.23e-16!41;UBERON:0006240!1.23e-16!41;UBERON:0000955!1.69e-16!69;UBERON:0006238!1.69e-16!69;UBERON:0003080!5.93e-16!42;UBERON:0002020!1.49e-14!34;UBERON:0003528!1.49e-14!34;UBERON:0001893!3.12e-14!34;UBERON:0001869!4.14e-14!32;UBERON:0002791!8.38e-14!33;UBERON:0002616!9.15e-14!59;UBERON:0002346!2.51e-13!90;UBERON:0003075!8.73e-13!86;UBERON:0007284!8.73e-13!86;UBERON:0000956!6.35e-12!25;UBERON:0000203!6.35e-12!25;UBERON:0002619!9.81e-12!22;UBERON:0001950!9.64e-11!20;UBERON:0003056!1.27e-10!61;UBERON:0000924!8.35e-10!173;UBERON:0006601!8.35e-10!173;UBERON:0007023!2.55e-09!115;UBERON:0004121!2.59e-09!169;UBERON:0000153!3.94e-07!129;UBERON:0007811!3.94e-07!129;UBERON:0000033!4.52e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.29e-13;32!UBERON:0002791;3.77e-13;32!UBERON:0003528;3.85e-13;34!UBERON:0002020;3.85e-13;34!UBERON:0001893;5.05e-13;34!UBERON:0002780;9.23e-13;41!UBERON:0001890;9.23e-13;41!UBERON:0000956;1.53e-12;25!UBERON:0000203;1.53e-12;25!UBERON:0002619;2.88e-12;22!UBERON:0000073;1.64e-11;53!UBERON:0002616;1.64e-11;53!UBERON:0001950;3.19e-11;20!UBERON:0001016;1.08e-09;83!UBERON:0000955;1.03e-08;68!UBERON:0001017;1.89e-08;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.18e-25,89;UBERON:0001017,5.20e-22,81;UBERON:0001049,1.73e-19,56;UBERON:0005068,1.73e-19,56;UBERON:0006241,1.73e-19,56;UBERON:0007135,1.73e-19,56;UBERON:0000073,1.72e-18,53;UBERON:0002616,1.72e-18,53;UBERON:0000955,7.27e-17,68;UBERON:0006238,7.27e-17,68;UBERON:0002780,1.01e-16,41;UBERON:0001890,1.01e-16,41;UBERON:0003080,1.01e-16,41;UBERON:0006240,1.01e-16,41;UBERON:0003528,1.26e-14,34;UBERON:0002020,1.26e-14,34;UBERON:0001893,2.65e-14,34;UBERON:0001869,3.52e-14,32;UBERON:0002791,5.06e-14,32;UBERON:0002346,5.28e-13,86;UBERON:0003075,1.83e-12,82;UBERON:0007284,1.83e-12,82;UBERON:0000956,5.55e-12,25;UBERON:0000203,5.55e-12,25;UBERON:0002619,8.60e-12,22;UBERON:0003056,1.78e-11,61;UBERON:0001950,8.56e-11,20;UBERON:0004121,1.99e-09,171;UBERON:0000924,1.99e-09,171;UBERON:0006601,1.99e-09,171;UBERON:0011216,2.88e-09,223;UBERON:0007023,5.49e-09,114;UBERON:0010371,4.30e-08,104 | |||
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| ||
|short_description=p5@SLC38A2 | |||
}} | }} |
Latest revision as of 11:14, 18 September 2015
Short description: | p5@SLC38A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SLC38A2_5end |
Coexpression cluster: | NA |
Association with transcript: | -21bp_to_ENST00000553252_5end |
EntrezGene: | SLC38A2 |
HGNC: | 13448 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.70e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.18e-25 | 89 |
central nervous system | 5.20e-22 | 81 |
neural tube | 1.73e-19 | 56 |
neural rod | 1.73e-19 | 56 |
future spinal cord | 1.73e-19 | 56 |
neural keel | 1.73e-19 | 56 |
regional part of nervous system | 1.72e-18 | 53 |
regional part of brain | 1.72e-18 | 53 |
brain | 7.27e-17 | 68 |
future brain | 7.27e-17 | 68 |
regional part of forebrain | 1.01e-16 | 41 |
forebrain | 1.01e-16 | 41 |
anterior neural tube | 1.01e-16 | 41 |
future forebrain | 1.01e-16 | 41 |
brain grey matter | 1.26e-14 | 34 |
gray matter | 1.26e-14 | 34 |
telencephalon | 2.65e-14 | 34 |
cerebral hemisphere | 3.52e-14 | 32 |
regional part of telencephalon | 5.06e-14 | 32 |
neurectoderm | 5.28e-13 | 86 |
neural plate | 1.83e-12 | 82 |
presumptive neural plate | 1.83e-12 | 82 |
cerebral cortex | 5.55e-12 | 25 |
pallium | 5.55e-12 | 25 |
regional part of cerebral cortex | 8.60e-12 | 22 |
pre-chordal neural plate | 1.78e-11 | 61 |
neocortex | 8.56e-11 | 20 |
ectoderm-derived structure | 1.99e-09 | 171 |
ectoderm | 1.99e-09 | 171 |
presumptive ectoderm | 1.99e-09 | 171 |
organ system subdivision | 2.88e-09 | 223 |
adult organism | 5.49e-09 | 114 |
ecto-epithelium | 4.30e-08 | 104 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.97e-20 | 235 |
disease of cellular proliferation | 1.05e-19 | 239 |
organ system cancer | 1.81e-13 | 137 |
cell type cancer | 2.12e-11 | 143 |
hematologic cancer | 5.63e-11 | 51 |
immune system cancer | 5.63e-11 | 51 |
leukemia | 3.79e-10 | 39 |
carcinoma | 1.16e-08 | 106 |
myeloid leukemia | 4.59e-08 | 31 |