FFCP PHASE1:Hg19::chr14:22554680..22554691,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12120 | |HGNC=12120 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390451_5end | |||
|cluster_id=chr14:22554680..22554691,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_1_at_TRAV23DV6_5end | |||
|id=chr14:22554680..22554691,+ | |||
|ontology_enrichment_celltype=CL:0000791!6.64e-37!18;CL:0000789!6.64e-37!18;CL:0002420!6.64e-37!18;CL:0002419!6.64e-37!18;CL:0000790!6.64e-37!18;CL:0000625!9.02e-28!11;CL:0000084!1.74e-25!25;CL:0000827!1.74e-25!25;CL:0000838!3.46e-15!52;CL:0000542!8.15e-15!53;CL:0000051!8.15e-15!53;CL:0000624!3.25e-13!6;CL:0000898!1.69e-10!3;CL:0000842!1.98e-09!3;CL:0000623!2.59e-09!3;CL:0000825!2.59e-09!3;CL:0002087!6.53e-08!119;CL:0000815!1.17e-07!2;CL:0000792!1.17e-07!2;CL:0002677!1.17e-07!2;CL:0000224!3.53e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.46e-23;18!CL:0000789;5.46e-23;18!CL:0002419;5.46e-23;18!CL:0000625;8.97e-22;11!CL:0000084;2.95e-16;25!CL:0000815;1.68e-14;2!CL:0000792;1.68e-14;2!CL:0002677;1.68e-14;2!CL:0000898;5.67e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.38e-23,18;CL:0000789,4.38e-23,18;CL:0002420,4.38e-23,18;CL:0002419,4.38e-23,18;CL:0000790,4.38e-23,18;CL:0000625,6.82e-22,11;CL:0000084,2.53e-16,25;CL:0000827,2.53e-16,25;CL:0000815,1.68e-14,2;CL:0000792,1.68e-14,2;CL:0002677,1.68e-14,2;CL:0000898,5.68e-10,3;CL:0000838,2.79e-07,52;CL:0000542,4.01e-07,53;CL:0000051,4.01e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;5.46e-23;18!UBERON:0005425;4.25e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!8.25e-19!15;UBERON:0000179!8.25e-19!15;UBERON:0000463!8.25e-19!15;UBERON:0002370!3.24e-08!4;UBERON:0005058!3.24e-08!4;UBERON:0009113!3.24e-08!4;UBERON:0003295!3.24e-08!4;UBERON:0005562!3.24e-08!4;UBERON:0004177!1.44e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.72e-15;2!UBERON:0005058;2.72e-15;2!UBERON:0009113;2.72e-15;2!UBERON:0000941;4.25e-08;1!UBERON:0001785;4.25e-08;1!UBERON:0002464;4.25e-08;1!UBERON:0004904;4.25e-08;1!UBERON:0001021;4.25e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.74e-08,4;UBERON:0005058,4.74e-08,4;UBERON:0009113,4.74e-08,4;UBERON:0003295,4.74e-08,4;UBERON:0005562,4.74e-08,4;UBERON:0000941,5.82e-08,1;UBERON:0001785,5.82e-08,1;UBERON:0002464,5.82e-08,1;UBERON:0004904,5.82e-08,1;UBERON:0001021,5.82e-08,1;UBERON:0003902,5.82e-08,1;UBERON:0005425,5.82e-08,1 | |||
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| ||
|short_description=p1@TRAV23DV6 | |||
}} | }} |
Latest revision as of 04:46, 19 September 2015
Short description: | p1@TRAV23DV6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRAV23DV6_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000390451_5end |
EntrezGene: | NA |
HGNC: | 12120 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.38e-23 | 18 |
alpha-beta T cell | 4.38e-23 | 18 |
immature T cell | 4.38e-23 | 18 |
mature T cell | 4.38e-23 | 18 |
immature alpha-beta T cell | 4.38e-23 | 18 |
CD8-positive, alpha-beta T cell | 6.82e-22 | 11 |
T cell | 2.53e-16 | 25 |
pro-T cell | 2.53e-16 | 25 |
regulatory T cell | 1.68e-14 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.68e-14 | 2 |
naive regulatory T cell | 1.68e-14 | 2 |
naive T cell | 5.68e-10 | 3 |
lymphoid lineage restricted progenitor cell | 2.79e-07 | 52 |
lymphocyte | 4.01e-07 | 53 |
common lymphoid progenitor | 4.01e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.74e-08 | 4 |
hemolymphoid system gland | 4.74e-08 | 4 |
thymic region | 4.74e-08 | 4 |
pharyngeal gland | 4.74e-08 | 4 |
thymus primordium | 4.74e-08 | 4 |
cranial nerve II | 5.82e-08 | 1 |
cranial nerve | 5.82e-08 | 1 |
nerve trunk | 5.82e-08 | 1 |
nerve connecting eye with brain | 5.82e-08 | 1 |
nerve | 5.82e-08 | 1 |
retinal neural layer | 5.82e-08 | 1 |
presumptive neural retina | 5.82e-08 | 1 |