Personal tools

MCL coexpression mm9:1717: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.170392729704821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202843190349958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402463621070817,0.440513861399464,0.294939832792845,0.193109477544623,1.09691714056273,0,0,0,0,0,0,0.206002197103771,0.313441563167376,0.355578477054666,0,0,0,0,0,0,0.332974415283731,0.579740111542449,0.613327611068366,0.461337122353058,0.433594786201484,0.323116468687679,0.268913763785961,0.291913532817604,0,0.633819428689635,0.518299646329405,0.79397342921376,0.183994055907028,0.135434985107224,0.182104477852721,0.609702488045973,0.429475765992591,0.55600927862698,0.486061930039393,0.384481874606599,0.241944181742968,0.0317017435824471,0,0,0.554037262465759,0,0.767699598167391,0.690077164971779,0.701761516724823,0.152695919012311,0,0,0,0.194062795919081,0,0,0,0,0,0,0.353343460740044,0,0.84121461238045,0.129358133846345,0.345934502957845,0.333059659762365,0.312824185754616,0.459606462924561,0.732259485497049,0,0,0,0,0,0,0,0.654500895916531,0.617178701145735,0,0,0,0,0.617587754707814,0.623508158186393,0.274060922583106,0.597147964022695,0.609443445699942,0.516623742860701,0.644149606210333,0.0805105854221362,0,0.0978549673988937,0,0.0531247310291112,0,0,0,0.055406237837571,0.0990682757404326,0.0388988969149198,0.0999233952154288,0,0,0.0703892716151147,0,0,0.0901189836454575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00246217733272061,0.851160989069243,0.565318781032302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0346870561021898,0,0,0,0.0294389011296462,0.0266298923127834,0.112343641145276,0.0633328814307688,0.0777140062712307,0.44384412465388,0,0,0,0,0,0,0,0.121976689400977,0,0,0.137398724818722,0.117946305307076,0.48009767853008,0.353297106602279,0.72770320828214,0.0736278867910527,0,0,0,0,0,0,0,0,0,0.0642538110976656,0,0,0.0158244871903339,0,0,0,0,0.624386458366755,0.581275971514145,0,0,0,0,0.216501115071344,0.0930603692915911,0.0873549591356574,0.108252561213616,0,0.111348509539896,0.252992651410535,0.358940419539848,0.108524491213051,0,0.0655375003561515,0.0663147875126409,0,0,0,0,0,0,0,0,0.1324189587654,0.119268019631849,0,0,0.431717172831905,0.0583008048101806,0,0,0.185264633597857,0.0712812415377886,0.174247988899791,0.115432414129512,0,0,0,0,0,0,0.0489745727197172,0,0,0.598440833598049,0,0.0814866010703366,0,0,0,0,0,0,0,0,0,0.0803809427109337,0,0,0,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0.0531569878936061,0.0433069931089932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0716713282549662,0,0.0767094571656325,0,0,0,0,0.949708330121324,0.814507484373561,0.827947632634613,0.694835287192439,0.572909929793709,0.604396236116953,0.568212287967179,0.806441451730728,0.742836956754754,0.790820003446092,0,0,0,0.0945084131504676,0.0826465040380816,0,0.0871588832444397,0.149856261570464,0.120876255993453,0.0978461107777356,0.098117166361508,0.0750453505157095,0.107523539997041,0.120615306320652,0.146762969796454,0,0.0905291472420136,0.141706336142815,0.0405431243462559,0.158843797677303,0.128033729919821,0.131923786075207,0,0.110822898586572,0.0390607415003592,0.0678996586311492,0.0729583017401753,0.101427320830301,0.104353329269123,0,0.0924644954689594,0.112441925220423,0,0.165781451382873,0.0766064454112358,0.175981558593572,0.0663213670230438,0.0845301845292944,0.140689222355642,0,0
|coexpression_dpi_cluster_scores_median=0.170392729704821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202843190349958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402463621070817,0.440513861399464,0.294939832792845,0.193109477544623,1.09691714056273,0,0,0,0,0,0,0.206002197103771,0.313441563167376,0.355578477054666,0,0,0,0,0,0,0.332974415283731,0.579740111542449,0.613327611068366,0.461337122353058,0.433594786201484,0.323116468687679,0.268913763785961,0.291913532817604,0,0.633819428689635,0.518299646329405,0.79397342921376,0.183994055907028,0.135434985107224,0.182104477852721,0.609702488045973,0.429475765992591,0.55600927862698,0.486061930039393,0.384481874606599,0.241944181742968,0.0317017435824471,0,0,0.554037262465759,0,0.767699598167391,0.690077164971779,0.701761516724823,0.152695919012311,0,0,0,0.194062795919081,0,0,0,0,0,0,0.353343460740044,0,0.84121461238045,0.129358133846345,0.345934502957845,0.333059659762365,0.312824185754616,0.459606462924561,0.732259485497049,0,0,0,0,0,0,0,0.654500895916531,0.617178701145735,0,0,0,0,0.617587754707814,0.623508158186393,0.274060922583106,0.597147964022695,0.609443445699942,0.516623742860701,0.644149606210333,0.0805105854221362,0,0.0978549673988937,0,0.0531247310291112,0,0,0,0.055406237837571,0.0990682757404326,0.0388988969149198,0.0999233952154288,0,0,0.0703892716151147,0,0,0.0901189836454575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00246217733272061,0.851160989069243,0.565318781032302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0346870561021898,0,0,0,0.0294389011296462,0.0266298923127834,0.112343641145276,0.0633328814307688,0.0777140062712307,0.44384412465388,0,0,0,0,0,0,0,0.121976689400977,0,0,0.137398724818722,0.117946305307076,0.48009767853008,0.353297106602279,0.72770320828214,0.0736278867910527,0,0,0,0,0,0,0,0,0,0.0642538110976656,0,0,0.0158244871903339,0,0,0,0,0.624386458366755,0.581275971514145,0,0,0,0,0.216501115071344,0.0930603692915911,0.0873549591356574,0.108252561213616,0,0.111348509539896,0.252992651410535,0.358940419539848,0.108524491213051,0,0.0655375003561515,0.0663147875126409,0,0,0,0,0,0,0,0,0.1324189587654,0.119268019631849,0,0,0.431717172831905,0.0583008048101806,0,0,0.185264633597857,0.0712812415377886,0.174247988899791,0.115432414129512,0,0,0,0,0,0,0.0489745727197172,0,0,0.598440833598049,0,0.0814866010703366,0,0,0,0,0,0,0,0,0,0.0803809427109337,0,0,0,0,0.034489466458534,0,0,0,0,0,0,0,0,0,0,0.0531569878936061,0.0433069931089932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0716713282549662,0,0.0767094571656325,0,0,0,0,0.949708330121324,0.814507484373561,0.827947632634613,0.694835287192439,0.572909929793709,0.604396236116953,0.568212287967179,0.806441451730728,0.742836956754754,0.790820003446092,0,0,0,0.0945084131504676,0.0826465040380816,0,0.0871588832444397,0.149856261570464,0.120876255993453,0.0978461107777356,0.098117166361508,0.0750453505157095,0.107523539997041,0.120615306320652,0.146762969796454,0,0.0905291472420136,0.141706336142815,0.0405431243462559,0.158843797677303,0.128033729919821,0.131923786075207,0,0.110822898586572,0.0390607415003592,0.0678996586311492,0.0729583017401753,0.101427320830301,0.104353329269123,0,0.0924644954689594,0.112441925220423,0,0.165781451382873,0.0766064454112358,0.175981558593572,0.0663213670230438,0.0845301845292944,0.140689222355642,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000221!1.57e-13!44;CL:0000133!1.57e-13!44;CL:0002319!4.15e-13!43;CL:0000117!3.19e-12!23;CL:0000337!3.19e-12!23;CL:0000540!7.54e-12!33;CL:0000047!7.54e-12!33;CL:0000031!7.54e-12!33;CL:0000404!7.54e-12!33;CL:0000055!6.88e-10!49;CL:0000393!2.11e-08!39;CL:0000211!2.11e-08!39
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001017!1.39e-32!73;UBERON:0001016!9.18e-32!75;UBERON:0000073!2.62e-28!54;UBERON:0001049!1.28e-26!52;UBERON:0005068!1.28e-26!52;UBERON:0006241!1.28e-26!52;UBERON:0007135!1.28e-26!52;UBERON:0004121!1.53e-24!95;UBERON:0000924!1.53e-24!95;UBERON:0006601!1.53e-24!95;UBERON:0000955!1.78e-23!47;UBERON:0006238!1.78e-23!47;UBERON:0002616!7.00e-23!46;UBERON:0002346!8.21e-23!64;UBERON:0003075!8.21e-23!64;UBERON:0007284!8.21e-23!64;UBERON:0002020!4.78e-21!34;UBERON:0003080!4.09e-20!40;UBERON:0010371!6.32e-20!73;UBERON:0002780!2.36e-19!39;UBERON:0001890!2.36e-19!39;UBERON:0006240!2.36e-19!39;UBERON:0003528!2.85e-18!29;UBERON:0002791!2.85e-18!29;UBERON:0001893!2.85e-18!29;UBERON:0010314!1.11e-17!92;UBERON:0003056!2.29e-17!49;UBERON:0000956!4.50e-14!21;UBERON:0001869!4.50e-14!21;UBERON:0000203!4.50e-14!21;UBERON:0002619!2.08e-11!17;UBERON:0000025!3.38e-11!114;UBERON:0004111!1.21e-10!122;UBERON:0002021!2.64e-09!10;UBERON:0000411!2.64e-09!10;UBERON:0001950!2.64e-09!10;UBERON:0003076!5.19e-07!12;UBERON:0003057!5.19e-07!12
}}
}}

Revision as of 17:19, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:45719061..45719072,+p11@Kcnn2
Mm9::chr18:45719084..45719136,+p1@Kcnn2
Mm9::chr18:45719142..45719157,+p5@Kcnn2
Mm9::chr18:45719243..45719254,+p6@Kcnn2
Mm9::chr18:45719583..45719597,+p8@Kcnn2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
central nervous system1.39e-3273
nervous system9.18e-3275
regional part of nervous system2.62e-2854
neural tube1.28e-2652
neural rod1.28e-2652
future spinal cord1.28e-2652
neural keel1.28e-2652
ectoderm-derived structure1.53e-2495
ectoderm1.53e-2495
presumptive ectoderm1.53e-2495
brain1.78e-2347
future brain1.78e-2347
regional part of brain7.00e-2346
neurectoderm8.21e-2364
neural plate8.21e-2364
presumptive neural plate8.21e-2364
gray matter4.78e-2134
anterior neural tube4.09e-2040
ecto-epithelium6.32e-2073
regional part of forebrain2.36e-1939
forebrain2.36e-1939
future forebrain2.36e-1939
brain grey matter2.85e-1829
regional part of telencephalon2.85e-1829
telencephalon2.85e-1829
structure with developmental contribution from neural crest1.11e-1792
pre-chordal neural plate2.29e-1749
cerebral cortex4.50e-1421
cerebral hemisphere4.50e-1421
pallium4.50e-1421
regional part of cerebral cortex2.08e-1117
tube3.38e-11114
anatomical conduit1.21e-10122
occipital lobe2.64e-0910
visual cortex2.64e-0910
neocortex2.64e-0910
posterior neural tube5.19e-0712
chordal neural plate5.19e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}