FFCP PHASE1:Hg19::chr1:201355489..201355514,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:201355489..201355514,- | |||
|description=CAGE_peak_at_chr1:201355489..201355514,- | |description=CAGE_peak_at_chr1:201355489..201355514,- | ||
|id=chr1:201355489..201355514,- | |id=chr1:201355489..201355514,- | ||
|ontology_enrichment_celltype=CL:0000066!7.46e-26!254;CL:0000223!1.51e-25!59;CL:0002076!2.25e-25!43;CL:0002251!1.47e-12!21;CL:0002368!1.64e-12!13;CL:0002159!3.88e-08!13;CL:0002202!4.99e-08!9;CL:0002632!4.99e-08!9 | |ontology_enrichment_celltype=CL:0000066!7.46e-26!254;CL:0000223!1.51e-25!59;CL:0002076!2.25e-25!43;CL:0002251!1.47e-12!21;CL:0002368!1.64e-12!13;CL:0002159!3.88e-08!13;CL:0002202!4.99e-08!9;CL:0002632!4.99e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.82e-22;13!CL:0002202;5.99e-15;9!CL:0002632;5.99e-15;9!CL:0002076;5.03e-14;42!CL:0002328;1.47e-12;3!CL:0000307;5.78e-12;3!CL:0000240;3.21e-10;6!CL:0000311;3.21e-10;6!CL:0000079;3.21e-10;6!CL:0000237;3.21e-10;6!CL:0002159;4.00e-09;14!CL:0000575;2.12e-08;2!CL:0000312;2.83e-07;5!CL:0000453;3.81e-07;5!CL:0000362;6.53e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.77e-22,13;CL:0000223,1.79e-20,58;CL:0002076,4.43e-19,42;CL:0002202,7.60e-15,9;CL:0002632,7.60e-15,9;CL:0000066,8.52e-13,253;CL:0002328,1.51e-12,3;CL:0000068,8.11e-12,3;CL:0000069,8.11e-12,3;CL:0000307,8.11e-12,3;CL:0000377,8.11e-12,3;CL:0000240,4.46e-10,6;CL:0000311,4.46e-10,6;CL:0000079,4.46e-10,6;CL:0000237,4.46e-10,6;CL:0000036,4.46e-10,6;CL:0000357,4.46e-10,6;CL:0000114,4.46e-10,6;CL:0002159,4.36e-09,14;CL:0000575,1.67e-08,2;CL:0000312,3.55e-07,5;CL:0000453,4.04e-07,5;CL:0000362,7.89e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;6.60e-13;58!CL:0000377;5.78e-12;3!CL:0000357;3.21e-10;6!CL:0000114;3.21e-10;6 | |||
|ontology_enrichment_disease=DOID:305!5.68e-11!106;DOID:1749!1.48e-07!14;DOID:0050687!8.52e-07!143 | |ontology_enrichment_disease=DOID:305!5.68e-11!106;DOID:1749!1.48e-07!14;DOID:0050687!8.52e-07!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.84e-24!169;UBERON:0000925!3.84e-24!169;UBERON:0006595!3.84e-24!169;UBERON:0001007!3.38e-17!155;UBERON:0001555!3.38e-17!155;UBERON:0007026!3.38e-17!155;UBERON:0004921!8.68e-15!129;UBERON:0004185!8.68e-15!129;UBERON:0000466!1.51e-12!126;UBERON:0000077!2.75e-12!130;UBERON:0001004!4.86e-11!72;UBERON:0005911!1.22e-10!82;UBERON:0000161!2.70e-10!35;UBERON:0000464!3.37e-10!104;UBERON:0001041!6.04e-10!98;UBERON:0000166!1.06e-09!21;UBERON:0000344!3.38e-09!12;UBERON:0006554!9.56e-09!44;UBERON:0001008!2.02e-08!45;UBERON:0000058!5.63e-08!26;UBERON:0005177!5.70e-08!107;UBERON:0000165!1.34e-07!28;UBERON:0000930!1.34e-07!28;UBERON:0002365!1.70e-07!31;UBERON:0002330!1.70e-07!31;UBERON:0000365!3.71e-07!5;UBERON:0000062!3.76e-07!511;UBERON:0003729!3.91e-07!5;UBERON:0000974!5.20e-07!10 | |ontology_enrichment_uberon=UBERON:0004119!3.84e-24!169;UBERON:0000925!3.84e-24!169;UBERON:0006595!3.84e-24!169;UBERON:0001007!3.38e-17!155;UBERON:0001555!3.38e-17!155;UBERON:0007026!3.38e-17!155;UBERON:0004921!8.68e-15!129;UBERON:0004185!8.68e-15!129;UBERON:0000466!1.51e-12!126;UBERON:0000077!2.75e-12!130;UBERON:0001004!4.86e-11!72;UBERON:0005911!1.22e-10!82;UBERON:0000161!2.70e-10!35;UBERON:0000464!3.37e-10!104;UBERON:0001041!6.04e-10!98;UBERON:0000166!1.06e-09!21;UBERON:0000344!3.38e-09!12;UBERON:0006554!9.56e-09!44;UBERON:0001008!2.02e-08!45;UBERON:0000058!5.63e-08!26;UBERON:0005177!5.70e-08!107;UBERON:0000165!1.34e-07!28;UBERON:0000930!1.34e-07!28;UBERON:0002365!1.70e-07!31;UBERON:0002330!1.70e-07!31;UBERON:0000365!3.71e-07!5;UBERON:0000062!3.76e-07!511;UBERON:0003729!3.91e-07!5;UBERON:0000974!5.20e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.47e-12;3!UBERON:0002031;1.47e-12;3!UBERON:0007196;1.12e-08;15!UBERON:0001558;1.12e-08;15!UBERON:0002185;1.10e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.54e-15,160;UBERON:0000925,1.54e-15,160;UBERON:0006595,1.54e-15,160;UBERON:0004815,1.51e-12,3;UBERON:0002031,1.51e-12,3;UBERON:0001007,1.28e-09,145;UBERON:0001555,1.28e-09,145;UBERON:0007026,1.28e-09,145;UBERON:0007196,1.28e-08,15;UBERON:0001558,1.28e-08,15;UBERON:0004921,1.73e-08,118;UBERON:0001041,4.16e-08,87;UBERON:0002185,1.12e-07,5;UBERON:0001004,9.35e-07,74 | |||
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|short_description=p@chr1:201355489..201355514,- | |short_description=p@chr1:201355489..201355514,- | ||
}} | }} |
Latest revision as of 02:07, 28 July 2015
Short description: | p@chr1:201355489..201355514, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:201355489..201355514, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 5.77e-22 | 13 |
endodermal cell | 1.79e-20 | 58 |
endo-epithelial cell | 4.43e-19 | 42 |
epithelial cell of tracheobronchial tree | 7.60e-15 | 9 |
epithelial cell of lower respiratory tract | 7.60e-15 | 9 |
epithelial cell | 8.52e-13 | 253 |
bronchial epithelial cell | 1.51e-12 | 3 |
duct epithelial cell | 8.11e-12 | 3 |
branched duct epithelial cell | 8.11e-12 | 3 |
tracheal epithelial cell | 8.11e-12 | 3 |
tracheoblast | 8.11e-12 | 3 |
stratified squamous epithelial cell | 4.46e-10 | 6 |
keratin accumulating cell | 4.46e-10 | 6 |
stratified epithelial cell | 4.46e-10 | 6 |
keratinizing barrier epithelial cell | 4.46e-10 | 6 |
epithelial fate stem cell | 4.46e-10 | 6 |
stratified epithelial stem cell | 4.46e-10 | 6 |
surface ectodermal cell | 4.46e-10 | 6 |
general ecto-epithelial cell | 4.36e-09 | 14 |
corneal epithelial cell | 1.67e-08 | 2 |
keratinocyte | 3.55e-07 | 5 |
Langerhans cell | 4.04e-07 | 5 |
epidermal cell | 7.89e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.54e-15 | 160 |
endoderm | 1.54e-15 | 160 |
presumptive endoderm | 1.54e-15 | 160 |
lower respiratory tract epithelium | 1.51e-12 | 3 |
epithelium of bronchus | 1.51e-12 | 3 |
digestive system | 1.28e-09 | 145 |
digestive tract | 1.28e-09 | 145 |
primitive gut | 1.28e-09 | 145 |
tracheobronchial tree | 1.28e-08 | 15 |
lower respiratory tract | 1.28e-08 | 15 |
subdivision of digestive tract | 1.73e-08 | 118 |
foregut | 4.16e-08 | 87 |
bronchus | 1.12e-07 | 5 |
respiratory system | 9.35e-07 | 74 |