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MCL coexpression mm9:870

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Phase1 CAGE Peaks

  Short description
Mm9::chr10:70062562..70062584,+ p@chr10:70062562..70062584
+
Mm9::chr13:13876285..13876335,+ p3@Gng4
Mm9::chr15:75396694..75396706,- p@chr15:75396694..75396706
-
Mm9::chr15:75396740..75396784,- p@chr15:75396740..75396784
-
Mm9::chr15:75396982..75396997,- -
p@chr15:75396982..75396997
Mm9::chr15:75396998..75397034,- p5@Ly6h
Mm9::chr15:75397038..75397088,- p4@Ly6h
Mm9::chr9:39411844..39411861,- p4@AW551984


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


no results for this coexpression

Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.23e-1623
neuroblast (sensu Vertebrata)1.23e-1623
neuron5.62e-1133
neuronal stem cell5.62e-1133
neuroblast5.62e-1133
electrically signaling cell5.62e-1133
electrically responsive cell9.91e-0839
electrically active cell9.91e-0839
ectodermal cell3.36e-0744
neurectodermal cell3.36e-0744
neural cell5.16e-0743

Uber Anatomy
Ontology termp-valuen
regional part of nervous system2.13e-3054
neural tube1.61e-2852
neural rod1.61e-2852
future spinal cord1.61e-2852
neural keel1.61e-2852
neurectoderm7.69e-2764
neural plate7.69e-2764
presumptive neural plate7.69e-2764
nervous system6.95e-2675
central nervous system8.10e-2673
brain4.91e-2447
future brain4.91e-2447
anterior neural tube1.63e-2340
regional part of brain2.53e-2346
pre-chordal neural plate7.38e-2349
regional part of forebrain9.18e-2339
forebrain9.18e-2339
future forebrain9.18e-2339
ecto-epithelium2.16e-2273
ectoderm-derived structure5.93e-2195
ectoderm5.93e-2195
presumptive ectoderm5.93e-2195
gray matter8.85e-2034
structure with developmental contribution from neural crest4.64e-1692
brain grey matter1.61e-1529
regional part of telencephalon1.61e-1529
telencephalon1.61e-1529
cerebral cortex1.64e-0921
cerebral hemisphere1.64e-0921
pallium1.64e-0921
regional part of cerebral cortex1.79e-0817
diencephalon2.98e-0810
future diencephalon2.98e-0810
occipital lobe1.05e-0710
visual cortex1.05e-0710
neocortex1.05e-0710
basal ganglion1.21e-078
nuclear complex of neuraxis1.21e-078
aggregate regional part of brain1.21e-078
collection of basal ganglia1.21e-078
cerebral subcortex1.21e-078
pituitary gland7.24e-078
gland of diencephalon7.24e-078
neuroendocrine gland7.24e-078


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.81836
MA0004.10.434673
MA0006.11.37063
MA0007.10.419994
MA0009.10.870101
MA0014.10.325341
MA0017.10.296816
MA0019.10.688051
MA0024.10.826339
MA0025.11.10341
MA0027.12.51754
MA0028.10.281528
MA0029.11.88628
MA0030.10.811181
MA0031.10.775627
MA0038.10.577528
MA0040.10.882616
MA0041.10.360875
MA0042.10.348174
MA0043.10.966833
MA0046.10.906029
MA0048.12.9369
MA0050.10.472794
MA0051.10.586414
MA0052.10.890676
MA0055.10.282934
MA0056.10
MA0057.10.643187
MA0058.10.341628
MA0059.10.353484
MA0060.10.197678
MA0061.10.224905
MA0063.10
MA0066.10.566617
MA0067.11.21448
MA0068.10.0965831
MA0069.10.891016
MA0070.10.881319
MA0071.10.471969
MA0072.10.872842
MA0073.13.20934
MA0074.11.31555
MA0076.10.845594
MA0077.10.851175
MA0078.10.61926
MA0081.10.375851
MA0083.10.96604
MA0084.11.54225
MA0087.10.922929
MA0088.11.29043
MA0089.10
MA0090.12.73833
MA0091.10.447561
MA0092.10.401504
MA0093.10.787675
MA0095.10
MA0098.10
MA0100.10.519598
MA0101.10.362124
MA0103.10.827743
MA0105.10.823589
MA0106.10.626997
MA0107.10.814533
MA0108.20.710846
MA0109.10
MA0111.10.415012
MA0113.10.598933
MA0114.10.633896
MA0115.10.969632
MA0116.12.93249
MA0117.10.937363
MA0119.10.362692
MA0122.10.957212
MA0124.11.16127
MA0125.11.0872
MA0130.10
MA0131.10.683521
MA0132.10
MA0133.10
MA0135.11.00325
MA0136.10.550755
MA0139.12.22005
MA0140.10.519484
MA0141.10.869985
MA0142.10.761136
MA0143.10.615203
MA0144.10.640537
MA0145.10.0701568
MA0146.10.385068
MA0147.10.666991
MA0148.10.450593
MA0149.10.367458
MA0062.20.426733
MA0035.20.524137
MA0039.22.04793
MA0138.20.675599
MA0002.20.172399
MA0137.20.863775
MA0104.21.03907
MA0047.20.576767
MA0112.20.0701537
MA0065.20.0704227
MA0150.10.419883
MA0151.10
MA0152.10.576873
MA0153.11.01988
MA0154.12.25112
MA0155.10.579465
MA0156.10.314185
MA0157.10.729116
MA0158.10
MA0159.10.246253
MA0160.10.453546
MA0161.10
MA0162.11.88646
MA0163.13.9264
MA0164.10.551114
MA0080.20.302064
MA0018.20.560731
MA0099.20.669311
MA0079.28.72125
MA0102.21.59466
MA0258.10.210437
MA0259.11.2032
MA0442.10