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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000047,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001444,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0000020,UBERON:0002049,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002200,UBERON:0006876,UBERON:0005085,UBERON:0001048,UBERON:0006598,UBERON:0007798,UBERON:0002532,UBERON:0002506,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0001769,UBERON:0003075,UBERON:0003056,UBERON:0001009,UBERON:0003072,UBERON:0003071,UBERON:0006601,UBERON:0004128,UBERON:0007284
+
|DRA_sample_Accession=CAGE@SAMD00004777
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000325,CL:0000147,CL:0000004,CL:0000255,CL:0000342,CL:0002565
+
|accession_numbers=CAGE;DRX008311;DRR009183;DRZ000608;DRZ001993;DRZ011958;DRZ013343
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000020,UBERON:0010371,UBERON:0002203,UBERON:0001768,UBERON:0000488,UBERON:0007625,UBERON:0001032,UBERON:0002049,UBERON:0002200,UBERON:0006876,UBERON:0010317,UBERON:0007798,UBERON:0002506,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0004535,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230,UBERON:0001769,UBERON:0001009
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000325,CL:0000147,CL:0000255,CL:0000342,CL:0002565
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000081
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr11:31839488..31839515,-!p3@PAX6!1.55!34.31!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!1.48!126.96!NR2F1;;chr3:25470156..25470227,+!p2@RARB!1.45!26.94!RARB;;chr11:31832658..31832681,-!p1@PAX6!1.44!26.42!PAX6;;chr18:56940611..56940660,-!p1@RAX!1.33!20.59!RAX;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.71!FOXF1;;chr12:66218255..66218304,+!p3@HMGA2!1.31!51.64!HMGA2;;chr2:63277948..63277974,+!p1@OTX1!1.31!19.56!OTX1;;chr3:147127142..147127168,+!p1@ZIC1!1.30!19.04!ZIC1;;chr5:92918956..92918969,+!p4@NR2F1!1.27!19.22!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!1.22!70.69!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.22!22.30!RARB;;chr3:147127177..147127194,+!p2@ZIC1!1.22!15.78!ZIC1;;chr2:45168834..45168847,+!p2@SIX3!1.22!15.44!SIX3;;chr7:35293685..35293718,-!p1@TBX20!1.20!14.75!TBX20;;chr3:12330560..12330579,+!p1@PPARG!1.17!15.78!PPARG;;chr3:25469815..25469866,+!p3@RARB!1.14!12.87!RARB;;chr7:19157248..19157268,-!p1@TWIST1!1.12!33.97!TWIST1;;chr12:26277817..26277863,-!p2@BHLHE41!1.09!15.27!BHLHE41;;chr5:92918768..92918783,+!p8@NR2F1!1.07!10.81!NR2F1;;chr9:126774018..126774055,+!p1@LHX2!1.05!10.12!LHX2;;chr3:25470062..25470084,+!p4@RARB!1.04!9.95!RARB;;chr9:132427883..132427951,+!p2@PRRX2!1.02!9.44!PRRX2;;chr13:100634031..100634045,+!p1@ZIC2!1.02!9.44!ZIC2;;chr14:29235961..29236008,+!p1@FOXG1!1.02!9.44!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!1.01!110.83!MLLT11;;chr7:26191809..26191890,+!p1@NFE2L3!1.01!46.49!NFE2L3;;chr12:66218183..66218209,+!p4@HMGA2!1.01!17.84!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.00!11.84!PRRX2;;chr4:111544219..111544240,-!p1@PITX2!1.00!9.09!PITX2;;chr2:45169193..45169219,+!p3@SIX3!0.99!8.75!SIX3;;chr7:14028488..14028516,-!p2@ETV1!0.98!9.44!ETV1;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.18!HMGA2;;chr2:45168875..45168916,+!p1@SIX3!0.97!8.24!SIX3;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.92!HIF1A;;chr5:92919100..92919135,+!p3@NR2F1!0.96!9.95!NR2F1;;chr5:92919375..92919438,+!p6@NR2F1!0.96!8.75!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.55!TCF12;;chr10:48355030..48355090,+!p1@ZNF488!0.95!10.29!ZNF488;;chr5:92918894..92918912,+!p2@NR2F1!0.92!24.88!NR2F1;;chr5:92918860..92918871,+!p10@NR2F1!0.92!8.06!NR2F1;;chr14:62162258..62162269,+!p2@HIF1A!0.91!72.40!HIF1A;;chr2:63277978..63277995,+!p2@OTX1!0.90!6.86!OTX1;;chr19:45260775..45260838,+!p5@BCL3!0.89!8.92!BCL3;;chr12:66218836..66218888,+!p1@HMGA2!0.88!65.37!HMGA2;;chr2:45169143..45169167,+!p5@SIX3!0.88!6.52!SIX3;;chr2:46524537..46524553,+!p1@EPAS1!0.87!665.34!EPAS1;;chr3:147139053..147139112,+!p5@ZIC1!0.87!6.35!ZIC1;;chr11:31827535..31827565,-!p11@PAX6!0.87!6.35!PAX6;;chr20:30433396..30433414,-!p1@FOXS1!0.87!6.35!FOXS1;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.19!EPAS1;;chr15:96869114..96869160,+!p11@NR2F2!0.86!8.75!NR2F2;;chr2:5832508..5832524,+!p1@SOX11!0.86!6.18!SOX11;;chr4:111558135..111558198,-!p2@PITX2!0.86!6.18!PITX2;;chr6:134210243..134210257,+!p1@TCF21!0.86!6.18!TCF21;;chr5:92919068..92919082,+!p5@NR2F1!0.85!7.38!NR2F1;;chr3:147124307..147124336,-!p2@ZIC4!0.85!6.00!ZIC4;;chr13:72441315..72441454,-!p1@DACH1!0.84!12.35!DACH1;;chr1:170633348..170633399,+!p2@PRRX1!0.84!8.24!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!0.83!184.78!HMGA1;;chr7:14029283..14029311,-!p1@ETV1!0.81!31.40!ETV1;;chr19:49864746..49864780,-!p2@TEAD2!0.81!7.72!TEAD2;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.49!HIF3A;;chrX:136648643..136648711,+!p2@ZIC3!0.81!5.49!ZIC3;;chr11:46299199..46299233,+!p1@CREB3L1!0.80!29.51!CREB3L1;;chrX:139587228..139587234,-!p1@SOX3!0.80!5.32!SOX3;;chrX:136648279..136648295,+!p1@ZIC3!0.80!5.32!ZIC3;;chr16:86600426..86600441,+!p1@FOXC2!0.79!13.73!FOXC2;;chr12:66218573..66218596,+!p7@HMGA2!0.79!8.06!HMGA2;;chr11:31832581..31832601,-!p7@PAX6!0.79!5.15!PAX6;;chr6:50786591..50786614,+!p1@TFAP2B!0.79!5.15!TFAP2B;;chr11:31832807..31832823,-!p4@PAX6!0.78!4.98!PAX6;;chr15:96869255..96869291,+!p6@NR2F2!0.77!9.44!NR2F2;;chr11:31832862..31832884,-!p2@PAX6!0.76!4.80!PAX6;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.06!MLLT11;;chr12:100867627..100867652,+!p1@NR1H4!0.75!4.63!NR1H4;;chr11:31832610..31832639,-!p5@PAX6!0.74!4.46!PAX6;;chr14:29234581..29234601,+!p2@FOXG1!0.74!4.46!FOXG1;;chr12:26277929..26277955,-!p3@BHLHE41!0.73!6.52!BHLHE41;;chr19:53496768..53496799,-!p1@ZNF702P!0.72!6.86!ZNF702P;;chr12:66218443..66218461,+!p8@HMGA2!0.72!5.66!HMGA2;;chr11:31832687..31832704,-!p6@PAX6!0.72!4.29!PAX6;;chr6:34204672..34204692,+!p1@HMGA1!0.71!532.20!HMGA1;;chr12:26277956..26277980,-!p1@BHLHE41!0.71!16.30!BHLHE41;;chr11:46299539..46299620,+!p2@CREB3L1!0.71!7.38!CREB3L1;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.18!BMP2;;chr6:45296048..45296082,+!p1@RUNX2!0.71!4.80!RUNX2;;chr8:10588010..10588030,-!p1@SOX7!0.71!4.12!SOX7;;chr11:31839453..31839462,-!p9@PAX6!0.71!4.12!PAX6;;chr14:29236269..29236285,+!p3@FOXG1!0.71!4.12!FOXG1;;chr4:188916918..188916942,+!p1@ZFP42!0.71!4.12!ZFP42;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.63!PRRX1;;chr15:96875041..96875052,+!p17@NR2F2!0.69!6.00!NR2F2;;chr3:21792682..21792720,-!p1@ZNF385D!0.6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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001768;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 41:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Iris%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs12596.11530-119I9.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Iris%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs12596.11530-119I9.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Iris%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs12596.11530-119I9.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Iris%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs12596.11530-119I9.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Iris%2520Pigment%2520Epithelial%2520Cells%252c%2520donor1.CNhs12596.11530-119I9.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11530-119I9
 
|id=FF:11530-119I9
|is_a=EFO:0002091;;FF:0000002;;FF:0000081;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000081
 +
|is_obsolete=
 +
|library_id=CNhs12596
 +
|library_id_phase_based=2:CNhs12596
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11530
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11530
 
|name=Iris Pigment Epithelial Cells, donor1
 
|name=Iris Pigment Epithelial Cells, donor1
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 42: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12596,LSID912,release011,COMPLETED
 
|profile_hcage=CNhs12596,LSID912,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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|rna_box=119
 
|rna_box=119
 
|rna_catalog_number=SC6565
 
|rna_catalog_number=SC6565
Line 57: Line 78:
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 
|sample_age=
 
|sample_age=
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 77: Line 99:
 
|sample_tissue=eye
 
|sample_tissue=eye
 
|top_motifs=PAX1,9:2.19239856471;NKX2-1,4:1.90053169355;NKX3-1:1.80195060324;T:1.55801572035;HIF1A:1.34969515638;ZNF384:1.31459932824;FOX{I1,J2}:1.27035103603;HSF1,2:1.18288481679;NR3C1:1.16206130977;NKX2-3_NKX2-5:1.12503974338;TLX1..3_NFIC{dimer}:1.05473987147;HOX{A6,A7,B6,B7}:1.05051445925;ZIC1..3:1.01896485945;EBF1:0.977247402136;LHX3,4:0.957966587892;ALX4:0.929198297102;TEAD1:0.922966316687;GZF1:0.811116917593;NANOG:0.793749989827;EN1,2:0.75233464334;CDC5L:0.733245018093;PAX8:0.689868195274;NR6A1:0.687004358089;FOXQ1:0.65767866008;HOX{A5,B5}:0.635547383868;ONECUT1,2:0.620511420718;GFI1B:0.617384175981;PAX4:0.598625841566;KLF4:0.591749642017;NFATC1..3:0.583678203486;TAL1_TCF{3,4,12}:0.580850814627;POU5F1:0.543751067569;GFI1:0.543657493108;NFY{A,B,C}:0.533873834928;EVI1:0.532227361781;SOX2:0.514897479284;SOX17:0.510695851149;ADNP_IRX_SIX_ZHX:0.510133703337;HOX{A4,D4}:0.498619282015;MZF1:0.496132475518;MAZ:0.490697923794;PRDM1:0.449072575493;SRF:0.416207759488;MYBL2:0.409259097939;GLI1..3:0.406319595601;AIRE:0.379684213992;AHR_ARNT_ARNT2:0.376216164283;ALX1:0.366079280843;TFCP2:0.361075235376;POU3F1..4:0.358015145506;HAND1,2:0.350775737861;ZNF423:0.348225577408;IKZF1:0.332759468961;GTF2A1,2:0.326921573338;HOXA9_MEIS1:0.314166825885;FOSL2:0.306237458201;TOPORS:0.302232114208;TBP:0.297060481751;LEF1_TCF7_TCF7L1,2:0.287130226188;ZFP161:0.275602448514;SP1:0.268927734863;GTF2I:0.268389859088;XCPE1{core}:0.258019438169;NKX3-2:0.255116665109;SOX5:0.254521480264;PBX1:0.251179090512;TFAP4:0.248854704093;HNF4A_NR2F1,2:0.244046628062;TBX4,5:0.244008142492;POU1F1:0.240232289604;TEF:0.239500744842;POU6F1:0.234823837997;UFEwm:0.203384203567;PRRX1,2:0.196636933212;NANOG{mouse}:0.180021898884;NFE2:0.171301462412;ESRRA:0.165237502511;MYFfamily:0.163120137097;E2F1..5:0.141277200673;PATZ1:0.120421600768;FOXD3:0.11947398158;RREB1:0.117015763108;NRF1:0.115538257548;HBP1_HMGB_SSRP1_UBTF:0.108586205018;ZNF143:0.104620036581;NFIX:0.103308244824;TFDP1:0.103149522026;NR5A1,2:0.0950960754791;NR1H4:0.0838584195752;PDX1:0.0837224577141;ZNF148:0.0828476103852;OCT4_SOX2{dimer}:0.0821588353854;STAT1,3:0.0758259034329;ATF6:0.0726528505986;EP300:0.0590008142756;RXR{A,B,G}:0.0480685939883;NFE2L1:0.0400282312669;FOS_FOS{B,L1}_JUN{B,D}:0.0238434558411;DBP:0.0224664911052;MTF1:0.0201907441787;NFE2L2:0.0170678514307;BACH2:0.0145104288913;NKX6-1,2:0.00521229461387;ZEB1:0.00487469306171;ZBTB6:0.00380968926775;HNF1A:-0.00380765532314;STAT5{A,B}:-0.00427265779991;MTE{core}:-0.0303726867589;ELK1,4_GABP{A,B1}:-0.0336046709479;CRX:-0.0444028055765;EGR1..3:-0.0463102091208;PAX5:-0.0598842398811;TP53:-0.0683125003439;JUN:-0.0866158928737;FOXM1:-0.100765534685;HIC1:-0.104547812954;RBPJ:-0.108922163424;VSX1,2:-0.109360441295;LMO2:-0.120385945948;HLF:-0.120973196493;PPARG:-0.131644077941;RFX1:-0.133214440706;NHLH1,2:-0.144227011068;MYB:-0.158199253956;PAX2:-0.159467274213;NFIL3:-0.1653999657;GATA4:-0.182762564692;MEF2{A,B,C,D}:-0.192165549634;MYOD1:-0.193370877039;TFAP2{A,C}:-0.202430894938;NKX2-2,8:-0.207202369799;SMAD1..7,9:-0.208625002082;PAX6:-0.212613902753;STAT2,4,6:-0.21521897437;ELF1,2,4:-0.215873551651;RORA:-0.216516384073;YY1:-0.218082178755;SNAI1..3:-0.222256577572;HMGA1,2:-0.228207495655;SOX{8,9,10}:-0.241778579122;ZNF238:-0.245120246447;CDX1,2,4:-0.246370072714;RUNX1..3:-0.249804149816;REST:-0.29161483399;POU2F1..3:-0.2956156886;CEBPA,B_DDIT3:-0.300429939204;CUX2:-0.313542083687;ZBTB16:-0.320347741586;PITX1..3:-0.330208151973;MED-1{core}:-0.33382104571;HMX1:-0.334819663105;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.347362497544;FOXL1:-0.352559852641;IRF1,2:-0.369970078219;XBP1:-0.370031751175;TFAP2B:-0.373704894753;FOXP3:-0.403247494864;IRF7:-0.403680669827;bHLH_family:-0.408454756795;FOXA2:-0.418650231525;SPI1:-0.444495470568;DMAP1_NCOR{1,2}_SMARC:-0.45188761624;TGIF1:-0.464502946197;NFKB1_REL_RELA:-0.46539033886;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477998109928;FOX{D1,D2}:-0.485797281512;GATA6:-0.490001570447;ETS1,2:-0.493184511968;SREBF1,2:-0.495483918672;ESR1:-0.511882657287;SPZ1:-0.517191434804;AR:-0.527285811671;MAFB:-0.530181152755;FOXP1:-0.531832323633;RXRA_VDR{dimer}:-0.533362485569;BPTF:-0.554683335175;TLX2:-0.55573696002;SPIB:-0.564832442973;PAX3,7:-0.590607510387;ARID5B:-0.617679150936;ATF2:-0.648029538889;CREB1:-0.650984262862;BREu{core}:-0.697667065125;FOXO1,3,4:-0.741274130702;RFX2..5_RFXANK_RFXAP:-0.756116611517;ATF5_CREB3:-0.758353252534;GCM1,2:-0.836131634342;HES1:-0.841672944745;FOXN1:-0.846450093304;ATF4:-0.853393659392;FOX{F1,F2,J1}:-1.08104532801;IKZF2:-1.17480775552
 
|top_motifs=PAX1,9:2.19239856471;NKX2-1,4:1.90053169355;NKX3-1:1.80195060324;T:1.55801572035;HIF1A:1.34969515638;ZNF384:1.31459932824;FOX{I1,J2}:1.27035103603;HSF1,2:1.18288481679;NR3C1:1.16206130977;NKX2-3_NKX2-5:1.12503974338;TLX1..3_NFIC{dimer}:1.05473987147;HOX{A6,A7,B6,B7}:1.05051445925;ZIC1..3:1.01896485945;EBF1:0.977247402136;LHX3,4:0.957966587892;ALX4:0.929198297102;TEAD1:0.922966316687;GZF1:0.811116917593;NANOG:0.793749989827;EN1,2:0.75233464334;CDC5L:0.733245018093;PAX8:0.689868195274;NR6A1:0.687004358089;FOXQ1:0.65767866008;HOX{A5,B5}:0.635547383868;ONECUT1,2:0.620511420718;GFI1B:0.617384175981;PAX4:0.598625841566;KLF4:0.591749642017;NFATC1..3:0.583678203486;TAL1_TCF{3,4,12}:0.580850814627;POU5F1:0.543751067569;GFI1:0.543657493108;NFY{A,B,C}:0.533873834928;EVI1:0.532227361781;SOX2:0.514897479284;SOX17:0.510695851149;ADNP_IRX_SIX_ZHX:0.510133703337;HOX{A4,D4}:0.498619282015;MZF1:0.496132475518;MAZ:0.490697923794;PRDM1:0.449072575493;SRF:0.416207759488;MYBL2:0.409259097939;GLI1..3:0.406319595601;AIRE:0.379684213992;AHR_ARNT_ARNT2:0.376216164283;ALX1:0.366079280843;TFCP2:0.361075235376;POU3F1..4:0.358015145506;HAND1,2:0.350775737861;ZNF423:0.348225577408;IKZF1:0.332759468961;GTF2A1,2:0.326921573338;HOXA9_MEIS1:0.314166825885;FOSL2:0.306237458201;TOPORS:0.302232114208;TBP:0.297060481751;LEF1_TCF7_TCF7L1,2:0.287130226188;ZFP161:0.275602448514;SP1:0.268927734863;GTF2I:0.268389859088;XCPE1{core}:0.258019438169;NKX3-2:0.255116665109;SOX5:0.254521480264;PBX1:0.251179090512;TFAP4:0.248854704093;HNF4A_NR2F1,2:0.244046628062;TBX4,5:0.244008142492;POU1F1:0.240232289604;TEF:0.239500744842;POU6F1:0.234823837997;UFEwm:0.203384203567;PRRX1,2:0.196636933212;NANOG{mouse}:0.180021898884;NFE2:0.171301462412;ESRRA:0.165237502511;MYFfamily:0.163120137097;E2F1..5:0.141277200673;PATZ1:0.120421600768;FOXD3:0.11947398158;RREB1:0.117015763108;NRF1:0.115538257548;HBP1_HMGB_SSRP1_UBTF:0.108586205018;ZNF143:0.104620036581;NFIX:0.103308244824;TFDP1:0.103149522026;NR5A1,2:0.0950960754791;NR1H4:0.0838584195752;PDX1:0.0837224577141;ZNF148:0.0828476103852;OCT4_SOX2{dimer}:0.0821588353854;STAT1,3:0.0758259034329;ATF6:0.0726528505986;EP300:0.0590008142756;RXR{A,B,G}:0.0480685939883;NFE2L1:0.0400282312669;FOS_FOS{B,L1}_JUN{B,D}:0.0238434558411;DBP:0.0224664911052;MTF1:0.0201907441787;NFE2L2:0.0170678514307;BACH2:0.0145104288913;NKX6-1,2:0.00521229461387;ZEB1:0.00487469306171;ZBTB6:0.00380968926775;HNF1A:-0.00380765532314;STAT5{A,B}:-0.00427265779991;MTE{core}:-0.0303726867589;ELK1,4_GABP{A,B1}:-0.0336046709479;CRX:-0.0444028055765;EGR1..3:-0.0463102091208;PAX5:-0.0598842398811;TP53:-0.0683125003439;JUN:-0.0866158928737;FOXM1:-0.100765534685;HIC1:-0.104547812954;RBPJ:-0.108922163424;VSX1,2:-0.109360441295;LMO2:-0.120385945948;HLF:-0.120973196493;PPARG:-0.131644077941;RFX1:-0.133214440706;NHLH1,2:-0.144227011068;MYB:-0.158199253956;PAX2:-0.159467274213;NFIL3:-0.1653999657;GATA4:-0.182762564692;MEF2{A,B,C,D}:-0.192165549634;MYOD1:-0.193370877039;TFAP2{A,C}:-0.202430894938;NKX2-2,8:-0.207202369799;SMAD1..7,9:-0.208625002082;PAX6:-0.212613902753;STAT2,4,6:-0.21521897437;ELF1,2,4:-0.215873551651;RORA:-0.216516384073;YY1:-0.218082178755;SNAI1..3:-0.222256577572;HMGA1,2:-0.228207495655;SOX{8,9,10}:-0.241778579122;ZNF238:-0.245120246447;CDX1,2,4:-0.246370072714;RUNX1..3:-0.249804149816;REST:-0.29161483399;POU2F1..3:-0.2956156886;CEBPA,B_DDIT3:-0.300429939204;CUX2:-0.313542083687;ZBTB16:-0.320347741586;PITX1..3:-0.330208151973;MED-1{core}:-0.33382104571;HMX1:-0.334819663105;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.347362497544;FOXL1:-0.352559852641;IRF1,2:-0.369970078219;XBP1:-0.370031751175;TFAP2B:-0.373704894753;FOXP3:-0.403247494864;IRF7:-0.403680669827;bHLH_family:-0.408454756795;FOXA2:-0.418650231525;SPI1:-0.444495470568;DMAP1_NCOR{1,2}_SMARC:-0.45188761624;TGIF1:-0.464502946197;NFKB1_REL_RELA:-0.46539033886;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.477998109928;FOX{D1,D2}:-0.485797281512;GATA6:-0.490001570447;ETS1,2:-0.493184511968;SREBF1,2:-0.495483918672;ESR1:-0.511882657287;SPZ1:-0.517191434804;AR:-0.527285811671;MAFB:-0.530181152755;FOXP1:-0.531832323633;RXRA_VDR{dimer}:-0.533362485569;BPTF:-0.554683335175;TLX2:-0.55573696002;SPIB:-0.564832442973;PAX3,7:-0.590607510387;ARID5B:-0.617679150936;ATF2:-0.648029538889;CREB1:-0.650984262862;BREu{core}:-0.697667065125;FOXO1,3,4:-0.741274130702;RFX2..5_RFXANK_RFXAP:-0.756116611517;ATF5_CREB3:-0.758353252534;GCM1,2:-0.836131634342;HES1:-0.841672944745;FOXN1:-0.846450093304;ATF4:-0.853393659392;FOX{F1,F2,J1}:-1.08104532801;IKZF2:-1.17480775552
 +
|xref=
 
}}
 
}}

Latest revision as of 11:46, 10 August 2017

Name:Iris Pigment Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12596
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typeiris pigment epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6565
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00004777
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12596 CAGE DRX008311 DRR009183
Accession ID Hg19

Library idBAMCTSS
CNhs12596 DRZ000608 DRZ001993
Accession ID Hg38

Library idBAMCTSS
CNhs12596 DRZ011958 DRZ013343
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0293
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.172
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0688
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural--0.0435
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.15
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0209
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.00787
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0395
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.0056
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.00361
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.709
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.18
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.543
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0833
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.128
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0688
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0688
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature--0.0199
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.509
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.375
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.18
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.227
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12596

Jaspar motif P-value
MA0002.2 0.582
MA0003.1 0.655
MA0004.1 0.0743
MA0006.1 0.287
MA0007.1 0.638
MA0009.1 0.203
MA0014.1 0.795
MA0017.1 0.438
MA0018.2 4.21501e-5
MA0019.1 0.739
MA0024.1 0.581
MA0025.1 0.132
MA0027.1 0.937
MA0028.1 0.616
MA0029.1 0.17
MA0030.1 0.0304
MA0031.1 0.00798
MA0035.2 0.16
MA0038.1 0.106
MA0039.2 0.454
MA0040.1 0.816
MA0041.1 0.543
MA0042.1 0.729
MA0043.1 0.00227
MA0046.1 0.751
MA0047.2 0.0506
MA0048.1 0.195
MA0050.1 1.45519e-5
MA0051.1 0.0224
MA0052.1 0.0256
MA0055.1 0.877
MA0057.1 0.582
MA0058.1 0.00817
MA0059.1 0.692
MA0060.1 2.71236e-4
MA0061.1 5.3721e-5
MA0062.2 4.42295e-5
MA0065.2 0.158
MA0066.1 0.934
MA0067.1 5.43075e-4
MA0068.1 0.326
MA0069.1 0.949
MA0070.1 0.346
MA0071.1 0.216
MA0072.1 0.592
MA0073.1 0.955
MA0074.1 0.462
MA0076.1 0.134
MA0077.1 0.851
MA0078.1 0.496
MA0079.2 0.0919
MA0080.2 4.73332e-10
MA0081.1 0.0187
MA0083.1 0.0562
MA0084.1 0.925
MA0087.1 0.82
MA0088.1 0.142
MA0090.1 3.68051e-5
MA0091.1 0.227
MA0092.1 0.601
MA0093.1 0.0826
MA0099.2 0.00137
MA0100.1 0.433
MA0101.1 4.98217e-4
MA0102.2 0.768
MA0103.1 0.0446
MA0104.2 0.111
MA0105.1 0.0835
MA0106.1 0.711
MA0107.1 7.79496e-6
MA0108.2 5.73316e-4
MA0111.1 0.357
MA0112.2 0.242
MA0113.1 0.351
MA0114.1 0.612
MA0115.1 0.655
MA0116.1 0.501
MA0117.1 0.104
MA0119.1 0.0746
MA0122.1 0.946
MA0124.1 0.664
MA0125.1 0.428
MA0131.1 0.875
MA0135.1 0.931
MA0136.1 4.63344e-6
MA0137.2 0.569
MA0138.2 0.162
MA0139.1 0.625
MA0140.1 0.245
MA0141.1 0.407
MA0142.1 0.155
MA0143.1 0.614
MA0144.1 0.463
MA0145.1 0.198
MA0146.1 0.154
MA0147.1 0.257
MA0148.1 0.554
MA0149.1 0.253
MA0150.1 0.0985
MA0152.1 0.0452
MA0153.1 0.957
MA0154.1 0.84
MA0155.1 0.977
MA0156.1 1.15427e-6
MA0157.1 0.266
MA0159.1 0.571
MA0160.1 0.0539
MA0162.1 0.264
MA0163.1 0.373
MA0164.1 0.809
MA0258.1 0.0165
MA0259.1 0.174



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12596

Novel motif P-value
1 0.272
10 0.0301
100 0.98
101 0.6
102 0.156
103 0.788
104 0.825
105 0.553
106 0.419
107 0.0551
108 0.842
109 0.0916
11 0.272
110 0.547
111 0.0623
112 0.0179
113 0.0323
114 0.296
115 0.759
116 0.977
117 0.00589
118 0.413
119 0.539
12 0.247
120 0.462
121 0.971
122 0.375
123 2.31896e-4
124 0.602
125 0.912
126 0.318
127 0.702
128 0.728
129 0.329
13 0.649
130 0.134
131 0.633
132 0.872
133 0.635
134 0.899
135 0.497
136 0.58
137 0.0623
138 0.396
139 0.0389
14 0.447
140 0.18
141 0.0737
142 0.137
143 0.947
144 0.63
145 0.607
146 0.979
147 0.289
148 0.509
149 0.307
15 0.636
150 0.548
151 0.187
152 0.651
153 0.881
154 0.85
155 7.66109e-4
156 0.425
157 0.355
158 0.00153
159 0.65
16 0.837
160 0.561
161 0.386
162 0.128
163 0.281
164 0.0496
165 0.861
166 0.0746
167 0.541
168 0.933
169 0.851
17 0.475
18 0.526
19 0.842
2 0.826
20 0.435
21 0.486
22 0.411
23 0.843
24 0.333
25 0.115
26 0.531
27 0.776
28 0.43
29 0.216
3 0.314
30 0.4
31 0.774
32 0.459
33 0.357
34 0.901
35 0.404
36 0.213
37 0.247
38 0.157
39 0.224
4 0.783
40 0.721
41 0.0164
42 0.463
43 0.141
44 0.68
45 0.846
46 0.457
47 0.294
48 0.517
49 0.112
5 0.657
50 0.995
51 0.623
52 0.776
53 0.182
54 0.518
55 0.92
56 0.964
57 0.876
58 0.126
59 0.594
6 0.407
60 0.123
61 0.285
62 0.102
63 0.608
64 0.474
65 0.115
66 0.344
67 0.725
68 0.74
69 0.499
7 0.312
70 0.0698
71 0.21
72 0.883
73 0.0883
74 0.561
75 0.0132
76 0.0294
77 0.944
78 0.921
79 0.408
8 0.834
80 0.606
81 0.926
82 0.0531
83 0.265
84 0.762
85 0.271
86 0.183
87 0.494
88 0.923
89 0.779
9 0.971
90 0.616
91 0.926
92 0.662
93 0.164
94 0.93
95 0.0382
96 0.524
97 0.973
98 0.116
99 0.0154



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12596


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000342 (pigment cell (sensu Vertebrata))
0002565 (iris pigment epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000020 (sense organ)
0010371 (ecto-epithelium)
0002203 (vasculature of eye)
0001768 (uvea)
0000488 (atypical epithelium)
0007625 (pigment epithelium of eye)
0001032 (sensory system)
0002049 (vasculature)
0002200 (vasculature of head)
0006876 (vasculature of organ)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002506 (iris epithelium)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0004535 (cardiovascular system)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
0001769 (iris)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000081 (human iris pigment epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA