FFCP PHASE1:Hg19::chr10:99258135..99258195,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64210|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13824|TSSclassifier=S|UniProt=E9PDQ4,F8W9Y2,Q96T76,B0QZ77,Q5T454,F8WCH8|association_with_transcript=0bp_to_ENST00000327238,ENST00000327253,ENST00000327277,ENST00000355839,ENST00000415383,ENST00000422291,ENST00000422685,ENST00000437002,ENST00000439048,ENST00000441194,ENST00000448660,uc001knr.2_5end|description=CAGE_peak_1_at_MMS19_5end|id=chr10:99258135..99258195,-|ontology_enrichment_celltype=CL:0002321!8.47e-10!248;CL:0000220!3.40e-09!246;CL:0000115!3.55e-09!35;CL:0002139!7.06e-08!24;CL:0000222!1.74e-07!119;CL:0002078!2.79e-07!44;CL:0000071!3.95e-07!18;CL:0002546!3.95e-07!18;CL:1000449!5.24e-07!16|ontology_enrichment_celltype_v019=CL:0000115;2.58e-08;36!CL:0002139;7.52e-08;24!CL:1000449;1.74e-07;15!CL:0000071;4.02e-07;18!CL:1000497;5.13e-07;17!CL:0002518;5.13e-07;17|ontology_enrichment_celltype_v019_2=CL:0002321,5.23e-10,250;CL:0000115,1.31e-09,36;CL:0002139,7.06e-08,24;CL:0000222,1.11e-07,121;CL:0002078,1.17e-07,45;CL:1000449,1.81e-07,15;CL:0000071,3.95e-07,18;CL:0002546,3.95e-07,18;CL:1000497,5.11e-07,17;CL:0002518,5.11e-07,17|ontology_enrichment_development_v019=CL:0002546;4.02e-07;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000119!1.08e-15!312;UBERON:0000483!1.95e-15!309;UBERON:0000025!1.91e-13!194;UBERON:0004111!3.47e-11!241;UBERON:0000924!6.76e-11!173;UBERON:0006601!6.76e-11!173;UBERON:0005743!1.66e-10!86;UBERON:0003056!1.91e-10!61;UBERON:0004121!1.99e-10!169;UBERON:0000153!2.93e-10!129;UBERON:0007811!2.93e-10!129;UBERON:0000033!3.42e-10!123;UBERON:0002346!3.85e-10!90;UBERON:0001017!6.13e-10!82;UBERON:0000955!6.88e-10!69;UBERON:0006238!6.88e-10!69;UBERON:0000073!8.91e-10!94;UBERON:0001016!8.91e-10!94;UBERON:0003075!1.12e-09!86;UBERON:0007284!1.12e-09!86;UBERON:0001049!1.55e-09!57;UBERON:0005068!1.55e-09!57;UBERON:0006241!1.55e-09!57;UBERON:0007135!1.55e-09!57;UBERON:0002616!1.70e-09!59;UBERON:0000064!1.78e-09!219;UBERON:0002049!3.35e-09!79;UBERON:0007798!3.35e-09!79;UBERON:0000475!5.66e-09!365;UBERON:0000477!2.61e-08!286;UBERON:0000055!4.64e-08!69;UBERON:0003080!1.54e-07!42;UBERON:0002780!2.10e-07!41;UBERON:0001890!2.10e-07!41;UBERON:0006240!2.10e-07!41;UBERON:0001986!3.95e-07!18;UBERON:0004638!3.95e-07!18;UBERON:0004852!3.95e-07!18;UBERON:0001893!4.91e-07!34;UBERON:0004211!5.24e-07!16;UBERON:0001285!5.24e-07!16;UBERON:0007684!5.24e-07!16;UBERON:0003220!5.24e-07!16;UBERON:0004208!5.24e-07!16;UBERON:0001869!5.73e-07!32;UBERON:0002791!6.52e-07!33|ontology_enrichment_uberon_v019=UBERON:0006555;1.74e-07;15!UBERON:0004819;1.74e-07;15!UBERON:0001285;1.74e-07;15!UBERON:0007684;1.74e-07;15!UBERON:0004638;4.02e-07;18!UBERON:0001986;4.02e-07;18!UBERON:0004852;4.02e-07;18!UBERON:0003914;8.63e-07;74|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.80e-16,309;UBERON:0000483,5.08e-16,306;UBERON:0000025,2.17e-13,192;UBERON:0002346,2.11e-11,86;UBERON:0010371,2.76e-11,104;UBERON:0004111,5.09e-11,240;UBERON:0003075,6.21e-11,82;UBERON:0007284,6.21e-11,82;UBERON:0004121,6.45e-11,171;UBERON:0000924,6.45e-11,171;UBERON:0006601,6.45e-11,171;UBERON:0003056,1.67e-10,61;UBERON:0001017,8.45e-10,81;UBERON:0000955,9.48e-10,68;UBERON:0006238,9.48e-10,68;UBERON:0001049,2.12e-09,56;UBERON:0005068,2.12e-09,56;UBERON:0006241,2.12e-09,56;UBERON:0007135,2.12e-09,56;UBERON:0000073,2.19e-09,53;UBERON:0002616,2.19e-09,53;UBERON:0002049,2.25e-09,78;UBERON:0007798,2.25e-09,78;UBERON:0001016,4.38e-09,89;UBERON:0000055,3.13e-08,68;UBERON:0010314,6.30e-08,132;UBERON:0004211,1.81e-07,15;UBERON:0009773,1.81e-07,15;UBERON:0001231,1.81e-07,15;UBERON:0001285,1.81e-07,15;UBERON:0007684,1.81e-07,15;UBERON:0004208,1.81e-07,15;UBERON:0002780,2.10e-07,41;UBERON:0001890,2.10e-07,41;UBERON:0003080,2.10e-07,41;UBERON:0006240,2.10e-07,41;UBERON:0004638,3.95e-07,18;UBERON:0001986,3.95e-07,18;UBERON:0004852,3.95e-07,18;UBERON:0001893,4.91e-07,34;UBERON:0001869,5.73e-07,32;UBERON:0006555,6.58e-07,16;UBERON:0004819,6.58e-07,16;UBERON:0002791,9.30e-07,32|phase1_expression=19.9846217197612,23.3369571041172,20.7202974021078,20.0146596706261,17.4314826826642,20.0637860543085,20.2639902534648,28.4273943042074,49.8864549861692,46.6894479352867,60.7087016136012,59.1976118472767,65.6779775788849,40.4715974179353,22.8664189252262,32.943932176137,30.7374209292228,32.1336439770444,31.2276991225924,41.7380386880311,49.3681672811092,57.3622140304901,36.3519703656442,39.8304576962093,36.1562802033032,37.1369151935043,33.0044369588782,37.545042686625,15.7345710739562,19.1914699048606,14.7075317150272,69.8760130603985,72.5906264255583,52.8748234538506,45.8605827435386,53.3134621827831,21.4328320714438,17.1738576644882,12.0326668482085,17.3608696572681,23.9589557436719,20.7291946252147,22.4090743841742,16.1392045045317,15.1150377475524,17.4660524055228,7.43772918098191,9.86802931252382,8.05236564327269,4.31538588483226,5.12321413058201,4.25668013799453,7.23965929546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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64210 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13824 | |||
|TSSclassifier=S | |||
|UniProt=E9PDQ4,F8W9Y2,Q96T76,B0QZ77,Q5T454,F8WCH8 | |||
|association_with_transcript=0bp_to_ENST00000327238,ENST00000327253,ENST00000327277,ENST00000355839,ENST00000415383,ENST00000422291,ENST00000422685,ENST00000437002,ENST00000439048,ENST00000441194,ENST00000448660,uc001knr.2_5end | |||
|description=CAGE_peak_1_at_MMS19_5end | |||
|id=chr10:99258135..99258195,- | |||
|ontology_enrichment_celltype=CL:0002321!8.47e-10!248;CL:0000220!3.40e-09!246;CL:0000115!3.55e-09!35;CL:0002139!7.06e-08!24;CL:0000222!1.74e-07!119;CL:0002078!2.79e-07!44;CL:0000071!3.95e-07!18;CL:0002546!3.95e-07!18;CL:1000449!5.24e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000115;2.58e-08;36!CL:0002139;7.52e-08;24!CL:1000449;1.74e-07;15!CL:0000071;4.02e-07;18!CL:1000497;5.13e-07;17!CL:0002518;5.13e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.23e-10,250;CL:0000115,1.31e-09,36;CL:0002139,7.06e-08,24;CL:0000222,1.11e-07,121;CL:0002078,1.17e-07,45;CL:1000449,1.81e-07,15;CL:0000071,3.95e-07,18;CL:0002546,3.95e-07,18;CL:1000497,5.11e-07,17;CL:0002518,5.11e-07,17 | |||
|ontology_enrichment_development_v019=CL:0002546;4.02e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0006555;1.74e-07;15!UBERON:0004819;1.74e-07;15!UBERON:0001285;1.74e-07;15!UBERON:0007684;1.74e-07;15!UBERON:0004638;4.02e-07;18!UBERON:0001986;4.02e-07;18!UBERON:0004852;4.02e-07;18!UBERON:0003914;8.63e-07;74 | |||
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| |||
|short_description=p1@MMS19 | |||
}} |
Revision as of 15:14, 10 September 2013
Short description: | p1@MMS19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_MMS19_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000327238, ENST00000327253, ENST00000327277, ENST00000355839, ENST00000415383, ENST00000422291, ENST00000422685, ENST00000437002, ENST00000439048, ENST00000441194, ENST00000448660, uc001knr.2_5end |
EntrezGene: | MMS19 |
HGNC: | 13824 |
UniProt: | E9PDQ4F8W9Y2Q96T76B0QZ77Q5T454F8WCH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.23e-10 | 250 |
endothelial cell | 1.31e-09 | 36 |
endothelial cell of vascular tree | 7.06e-08 | 24 |
mesodermal cell | 1.11e-07 | 121 |
meso-epithelial cell | 1.17e-07 | 45 |
epithelial cell of nephron | 1.81e-07 | 15 |
blood vessel endothelial cell | 3.95e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.95e-07 | 18 |
kidney cell | 5.11e-07 | 17 |
kidney epithelial cell | 5.11e-07 | 17 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.