FFCP PHASE1:Hg19::chr17:73236499..73236511,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23163|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17079|TSSclassifier=S|UniProt=|association_with_transcript=19bp_to_AK124541_5end|coexpression_cluster_id=C11|description=CAGE_peak_6_at_GGA3_5end|id=chr17:73236499..73236511,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;6.24e-88;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.02e-38!57;UBERON:0005068!1.02e-38!57;UBERON:0006241!1.02e-38!57;UBERON:0007135!1.02e-38!57;UBERON:0002616!4.25e-37!59;UBERON:0002780!7.94e-34!41;UBERON:0001890!7.94e-34!41;UBERON:0006240!7.94e-34!41;UBERON:0003080!7.37e-33!42;UBERON:0000955!3.89e-32!69;UBERON:0006238!3.89e-32!69;UBERON:0001017!5.07e-31!82;UBERON:0005743!7.46e-31!86;UBERON:0002346!2.58e-29!90;UBERON:0003075!1.78e-27!86;UBERON:0007284!1.78e-27!86;UBERON:0000073!5.59e-27!94;UBERON:0001016!5.59e-27!94;UBERON:0007023!1.53e-26!115;UBERON:0001893!5.74e-26!34;UBERON:0002020!7.17e-26!34;UBERON:0003528!7.17e-26!34;UBERON:0002791!4.08e-24!33;UBERON:0001869!2.23e-22!32;UBERON:0003056!3.77e-22!61;UBERON:0002619!4.68e-21!22;UBERON:0000956!3.68e-18!25;UBERON:0000203!3.68e-18!25;UBERON:0000033!2.55e-17!123;UBERON:0000153!4.07e-17!129;UBERON:0007811!4.07e-17!129;UBERON:0001950!4.33e-17!20;UBERON:0000924!1.06e-14!173;UBERON:0006601!1.06e-14!173;UBERON:0004121!2.04e-13!169;UBERON:0000200!7.73e-11!6;UBERON:0002298!1.28e-10!8;UBERON:0004733!1.53e-09!12;UBERON:0002028!1.53e-09!12;UBERON:0007277!1.53e-09!12;UBERON:0001894!1.62e-09!7;UBERON:0006222!1.62e-09!7;UBERON:0002308!3.07e-09!9;UBERON:0000125!3.07e-09!9;UBERON:0002771!9.68e-09!3;UBERON:0004732!1.02e-08!13;UBERON:0001872!3.29e-08!5;UBERON:0006331!3.31e-08!3;UBERON:0000988!5.01e-08!3;UBERON:0001871!8.25e-08!7;UBERON:0003076!2.12e-07!15;UBERON:0003057!2.12e-07!15;UBERON:0000025!3.52e-07!194;UBERON:0002680!4.34e-07!9;UBERON:0001895!4.34e-07!9;UBERON:0010092!4.34e-07!9|ontology_enrichment_uberon_v019=UBERON:0002037;9.76e-45;6!UBERON:0001905;7.04e-34;2!UBERON:0002757;7.04e-34;2!UBERON:0010134;7.04e-34;2!UBERON:0005408;7.04e-34;2!UBERON:0001899;7.04e-34;2!UBERON:0002680;2.66e-30;9!UBERON:0001895;2.66e-30;9!UBERON:0004733;4.59e-23;12!UBERON:0002028;4.59e-23;12!UBERON:0004732;2.16e-21;13!UBERON:0003296;1.03e-17;4!UBERON:0010133;1.03e-17;4!UBERON:0002784;1.03e-17;4!UBERON:0001894;9.89e-11;7!UBERON:0000073;4.61e-09;53!UBERON:0002616;4.61e-09;53!UBERON:0000955;7.65e-09;68|ontology_enrichment_uberon_v019_2=UBERON:0002037,9.76e-45,6;UBERON:0006215,9.76e-45,6;UBERON:0001905,7.05e-34,2;UBERON:0002757,7.05e-34,2;UBERON:0010134,7.05e-34,2;UBERON:0005408,7.05e-34,2;UBERON:0001899,7.05e-34,2;UBERON:0002680,2.66e-30,9;UBERON:0001895,2.66e-30,9;UBERON:0010092,2.66e-30,9;UBERON:0004733,4.59e-23,12;UBERON:0002028,4.59e-23,12;UBERON:0007277,4.59e-23,12;UBERON:0004732,2.16e-21,13;UBERON:0003076,1.04e-18,15;UBERON:0003057,1.04e-18,15;UBERON:0003296,1.03e-17,4;UBERON:0010133,1.03e-17,4;UBERON:0002784,1.03e-17,4;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0001894,9.89e-11,7;UBERON:0006222,9.89e-11,7;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0.33307196799782,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23163 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17079 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=19bp_to_AK124541_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_6_at_GGA3_5end | |||
|id=chr17:73236499..73236511,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.24e-88;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.02e-38!57;UBERON:0005068!1.02e-38!57;UBERON:0006241!1.02e-38!57;UBERON:0007135!1.02e-38!57;UBERON:0002616!4.25e-37!59;UBERON:0002780!7.94e-34!41;UBERON:0001890!7.94e-34!41;UBERON:0006240!7.94e-34!41;UBERON:0003080!7.37e-33!42;UBERON:0000955!3.89e-32!69;UBERON:0006238!3.89e-32!69;UBERON:0001017!5.07e-31!82;UBERON:0005743!7.46e-31!86;UBERON:0002346!2.58e-29!90;UBERON:0003075!1.78e-27!86;UBERON:0007284!1.78e-27!86;UBERON:0000073!5.59e-27!94;UBERON:0001016!5.59e-27!94;UBERON:0007023!1.53e-26!115;UBERON:0001893!5.74e-26!34;UBERON:0002020!7.17e-26!34;UBERON:0003528!7.17e-26!34;UBERON:0002791!4.08e-24!33;UBERON:0001869!2.23e-22!32;UBERON:0003056!3.77e-22!61;UBERON:0002619!4.68e-21!22;UBERON:0000956!3.68e-18!25;UBERON:0000203!3.68e-18!25;UBERON:0000033!2.55e-17!123;UBERON:0000153!4.07e-17!129;UBERON:0007811!4.07e-17!129;UBERON:0001950!4.33e-17!20;UBERON:0000924!1.06e-14!173;UBERON:0006601!1.06e-14!173;UBERON:0004121!2.04e-13!169;UBERON:0000200!7.73e-11!6;UBERON:0002298!1.28e-10!8;UBERON:0004733!1.53e-09!12;UBERON:0002028!1.53e-09!12;UBERON:0007277!1.53e-09!12;UBERON:0001894!1.62e-09!7;UBERON:0006222!1.62e-09!7;UBERON:0002308!3.07e-09!9;UBERON:0000125!3.07e-09!9;UBERON:0002771!9.68e-09!3;UBERON:0004732!1.02e-08!13;UBERON:0001872!3.29e-08!5;UBERON:0006331!3.31e-08!3;UBERON:0000988!5.01e-08!3;UBERON:0001871!8.25e-08!7;UBERON:0003076!2.12e-07!15;UBERON:0003057!2.12e-07!15;UBERON:0000025!3.52e-07!194;UBERON:0002680!4.34e-07!9;UBERON:0001895!4.34e-07!9;UBERON:0010092!4.34e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;9.76e-45;6!UBERON:0001905;7.04e-34;2!UBERON:0002757;7.04e-34;2!UBERON:0010134;7.04e-34;2!UBERON:0005408;7.04e-34;2!UBERON:0001899;7.04e-34;2!UBERON:0002680;2.66e-30;9!UBERON:0001895;2.66e-30;9!UBERON:0004733;4.59e-23;12!UBERON:0002028;4.59e-23;12!UBERON:0004732;2.16e-21;13!UBERON:0003296;1.03e-17;4!UBERON:0010133;1.03e-17;4!UBERON:0002784;1.03e-17;4!UBERON:0001894;9.89e-11;7!UBERON:0000073;4.61e-09;53!UBERON:0002616;4.61e-09;53!UBERON:0000955;7.65e-09;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,9.76e-45,6;UBERON:0006215,9.76e-45,6;UBERON:0001905,7.05e-34,2;UBERON:0002757,7.05e-34,2;UBERON:0010134,7.05e-34,2;UBERON:0005408,7.05e-34,2;UBERON:0001899,7.05e-34,2;UBERON:0002680,2.66e-30,9;UBERON:0001895,2.66e-30,9;UBERON:0010092,2.66e-30,9;UBERON:0004733,4.59e-23,12;UBERON:0002028,4.59e-23,12;UBERON:0007277,4.59e-23,12;UBERON:0004732,2.16e-21,13;UBERON:0003076,1.04e-18,15;UBERON:0003057,1.04e-18,15;UBERON:0003296,1.03e-17,4;UBERON:0010133,1.03e-17,4;UBERON:0002784,1.03e-17,4;UBERON:0000073,4.68e-12,53;UBERON:0002616,4.68e-12,53;UBERON:0001049,1.77e-11,56;UBERON:0005068,1.77e-11,56;UBERON:0006241,1.77e-11,56;UBERON:0007135,1.77e-11,56;UBERON:0001894,9.89e-11,7;UBERON:0006222,9.89e-11,7;UBERON:0000955,1.53e-09,68;UBERON:0006238,1.53e-09,68;UBERON:0001017,3.31e-08,81;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86;UBERON:0001016,1.68e-07,89 | |||
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|short_description=p6@GGA3 | |||
}} |
Revision as of 15:37, 11 September 2013
Short description: | p6@GGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_GGA3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 19bp_to_AK124541_5end |
EntrezGene: | GGA3 |
HGNC: | 17079 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 9.76e-45 | 6 |
rhombic lip | 9.76e-45 | 6 |
pineal body | 7.05e-34 | 2 |
regional part of epithalamus | 7.05e-34 | 2 |
secretory circumventricular organ | 7.05e-34 | 2 |
circumventricular organ | 7.05e-34 | 2 |
epithalamus | 7.05e-34 | 2 |
regional part of metencephalon | 2.66e-30 | 9 |
metencephalon | 2.66e-30 | 9 |
future metencephalon | 2.66e-30 | 9 |
segmental subdivision of hindbrain | 4.59e-23 | 12 |
hindbrain | 4.59e-23 | 12 |
presumptive hindbrain | 4.59e-23 | 12 |
segmental subdivision of nervous system | 2.16e-21 | 13 |
posterior neural tube | 1.04e-18 | 15 |
chordal neural plate | 1.04e-18 | 15 |
gland of diencephalon | 1.03e-17 | 4 |
neuroendocrine gland | 1.03e-17 | 4 |
regional part of diencephalon | 1.03e-17 | 4 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
diencephalon | 9.89e-11 | 7 |
future diencephalon | 9.89e-11 | 7 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.