FFCP PHASE1:Hg19::chr17:80416050..80416101,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=26502 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29916 | |||
|TSSclassifier=S | |||
|UniProt=B3KPX2,Q9UHQ1 | |||
|association_with_transcript=0bp_to_ENST00000390006,NM_001038618,uc002kff.3_5end | |||
|description=CAGE_peak_3_at_NARF_5end | |||
|id=chr17:80416050..80416101,+ | |||
|ontology_enrichment_celltype=CL:0000988!3.52e-17!182;CL:0000037!1.14e-16!172;CL:0000566!1.14e-16!172;CL:0002032!1.64e-14!165;CL:0000837!1.64e-14!165;CL:0002031!8.12e-13!124;CL:0000738!2.56e-12!140;CL:0002087!4.20e-12!119;CL:0000763!2.83e-10!112;CL:0000049!2.83e-10!112;CL:0000860!5.74e-10!45;CL:0002057!1.80e-09!42;CL:0000557!9.60e-09!71;CL:0000839!1.91e-08!70;CL:0002009!8.03e-08!65;CL:0002194!1.66e-07!63;CL:0000576!1.66e-07!63;CL:0000040!1.66e-07!63;CL:0000559!1.66e-07!63 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.74e-17,177;CL:0000037,1.14e-16,168;CL:0002032,1.67e-14,161;CL:0000837,1.67e-14,161;CL:0002031,8.24e-13,120;CL:0000738,2.54e-12,136;CL:0002087,4.26e-12,115;CL:0000763,2.53e-10,108;CL:0000049,2.53e-10,108;CL:0000860,1.79e-09,42;CL:0002057,1.79e-09,42;CL:0000557,7.98e-09,67;CL:0000473,1.32e-08,48;CL:0000234,1.32e-08,48;CL:0000839,1.61e-08,66;CL:0002009,6.77e-08,61;CL:0002194,1.41e-07,59;CL:0000576,1.41e-07,59;CL:0000040,1.41e-07,59;CL:0000559,1.41e-07,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.34e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0003528;6.39e-11;34!UBERON:0002020;6.39e-11;34!UBERON:0002791;6.97e-11;32!UBERON:0001893;7.92e-11;34!UBERON:0001869;8.46e-11;32!UBERON:0002780;3.81e-10;41!UBERON:0001890;3.81e-10;41!UBERON:0002619;7.56e-10;22!UBERON:0000073;9.25e-10;53!UBERON:0002616;9.25e-10;53!UBERON:0000956;1.87e-09;25!UBERON:0000203;1.87e-09;25!UBERON:0001950;2.57e-09;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.37e-19,114;UBERON:0001049,3.04e-16,56;UBERON:0005068,3.04e-16,56;UBERON:0006241,3.04e-16,56;UBERON:0007135,3.04e-16,56;UBERON:0000073,9.89e-16,53;UBERON:0002616,9.89e-16,53;UBERON:0002780,4.66e-14,41;UBERON:0001890,4.66e-14,41;UBERON:0003080,4.66e-14,41;UBERON:0006240,4.66e-14,41;UBERON:0001017,7.27e-13,81;UBERON:0003528,7.53e-13,34;UBERON:0002020,7.53e-13,34;UBERON:0001893,1.08e-12,34;UBERON:0001016,1.71e-12,89;UBERON:0002791,3.87e-12,32;UBERON:0001869,3.98e-12,32;UBERON:0003075,1.42e-11,82;UBERON:0007284,1.42e-11,82;UBERON:0000955,1.45e-11,68;UBERON:0006238,1.45e-11,68;UBERON:0002346,2.85e-11,86;UBERON:0002619,6.78e-10,22;UBERON:0000956,1.27e-09,25;UBERON:0000203,1.27e-09,25;UBERON:0003056,1.29e-09,61;UBERON:0001950,2.51e-09,20;UBERON:0002390,1.31e-07,98;UBERON:0003061,1.31e-07,98;UBERON:0002193,1.43e-07,108;UBERON:0002405,2.00e-07,93;UBERON:0002371,2.35e-07,76;UBERON:0010371,8.06e-07,104 | |||
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| |||
|short_description=p3@NARF | |||
}} |
Revision as of 16:36, 11 September 2013
Short description: | p3@NARF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NARF_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000390006, NM_001038618, uc002kff.3_5end |
EntrezGene: | NARF |
HGNC: | 29916 |
UniProt: | B3KPX2Q9UHQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.74e-17 | 177 |
hematopoietic stem cell | 1.14e-16 | 168 |
hematopoietic oligopotent progenitor cell | 1.67e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.67e-14 | 161 |
hematopoietic lineage restricted progenitor cell | 8.24e-13 | 120 |
leukocyte | 2.54e-12 | 136 |
nongranular leukocyte | 4.26e-12 | 115 |
myeloid cell | 2.53e-10 | 108 |
common myeloid progenitor | 2.53e-10 | 108 |
classical monocyte | 1.79e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-09 | 42 |
granulocyte monocyte progenitor cell | 7.98e-09 | 67 |
defensive cell | 1.32e-08 | 48 |
phagocyte | 1.32e-08 | 48 |
myeloid lineage restricted progenitor cell | 1.61e-08 | 66 |
macrophage dendritic cell progenitor | 6.77e-08 | 61 |
monopoietic cell | 1.41e-07 | 59 |
monocyte | 1.41e-07 | 59 |
monoblast | 1.41e-07 | 59 |
promonocyte | 1.41e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.37e-19 | 114 |
neural tube | 3.04e-16 | 56 |
neural rod | 3.04e-16 | 56 |
future spinal cord | 3.04e-16 | 56 |
neural keel | 3.04e-16 | 56 |
regional part of nervous system | 9.89e-16 | 53 |
regional part of brain | 9.89e-16 | 53 |
regional part of forebrain | 4.66e-14 | 41 |
forebrain | 4.66e-14 | 41 |
anterior neural tube | 4.66e-14 | 41 |
future forebrain | 4.66e-14 | 41 |
central nervous system | 7.27e-13 | 81 |
brain grey matter | 7.53e-13 | 34 |
gray matter | 7.53e-13 | 34 |
telencephalon | 1.08e-12 | 34 |
nervous system | 1.71e-12 | 89 |
regional part of telencephalon | 3.87e-12 | 32 |
cerebral hemisphere | 3.98e-12 | 32 |
neural plate | 1.42e-11 | 82 |
presumptive neural plate | 1.42e-11 | 82 |
brain | 1.45e-11 | 68 |
future brain | 1.45e-11 | 68 |
neurectoderm | 2.85e-11 | 86 |
regional part of cerebral cortex | 6.78e-10 | 22 |
cerebral cortex | 1.27e-09 | 25 |
pallium | 1.27e-09 | 25 |
pre-chordal neural plate | 1.29e-09 | 61 |
neocortex | 2.51e-09 | 20 |
hematopoietic system | 1.31e-07 | 98 |
blood island | 1.31e-07 | 98 |
hemolymphoid system | 1.43e-07 | 108 |
immune system | 2.00e-07 | 93 |
bone marrow | 2.35e-07 | 76 |
ecto-epithelium | 8.06e-07 | 104 |
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