FFCP PHASE1:Hg19::chr3:12200657..12200682,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7079|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11823|TSSclassifier=S|UniProt=|association_with_transcript=-10bp_to_uc003bwo.2_5end|coexpression_cluster_id=C11|description=CAGE_peak_7_at_TIMP4_5end|id=chr3:12200657..12200682,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;4.71e-75;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.74e-56!57;UBERON:0005068!2.74e-56!57;UBERON:0006241!2.74e-56!57;UBERON:0007135!2.74e-56!57;UBERON:0001017!1.20e-49!82;UBERON:0005743!6.71e-49!86;UBERON:0002616!3.01e-48!59;UBERON:0002346!1.43e-46!90;UBERON:0003075!3.69e-45!86;UBERON:0007284!3.69e-45!86;UBERON:0000073!4.03e-45!94;UBERON:0001016!4.03e-45!94;UBERON:0002780!1.77e-41!41;UBERON:0001890!1.77e-41!41;UBERON:0006240!1.77e-41!41;UBERON:0000955!8.02e-41!69;UBERON:0006238!8.02e-41!69;UBERON:0007023!1.63e-40!115;UBERON:0003080!2.78e-40!42;UBERON:0001893!5.79e-38!34;UBERON:0002020!7.20e-38!34;UBERON:0003528!7.20e-38!34;UBERON:0002791!3.36e-36!33;UBERON:0001869!4.70e-34!32;UBERON:0003056!6.48e-33!61;UBERON:0002619!1.00e-28!22;UBERON:0000153!4.02e-27!129;UBERON:0007811!4.02e-27!129;UBERON:0000033!2.34e-26!123;UBERON:0000924!1.62e-25!173;UBERON:0006601!1.62e-25!173;UBERON:0001950!4.12e-25!20;UBERON:0000956!9.48e-25!25;UBERON:0000203!9.48e-25!25;UBERON:0004121!3.50e-24!169;UBERON:0003076!1.42e-16!15;UBERON:0003057!1.42e-16!15;UBERON:0002308!6.34e-15!9;UBERON:0000125!6.34e-15!9;UBERON:0004733!1.61e-11!12;UBERON:0002028!1.61e-11!12;UBERON:0007277!1.61e-11!12;UBERON:0002420!1.66e-11!9;UBERON:0007245!1.66e-11!9;UBERON:0010009!1.66e-11!9;UBERON:0010011!1.66e-11!9;UBERON:0000454!1.66e-11!9;UBERON:0009663!3.71e-11!7;UBERON:0002021!7.19e-11!5;UBERON:0004732!1.70e-10!13;UBERON:0002298!4.83e-10!8;UBERON:0000369!3.85e-09!4;UBERON:0002435!3.85e-09!4;UBERON:0000204!3.85e-09!4;UBERON:0010082!3.85e-09!4;UBERON:0002680!5.14e-09!9;UBERON:0001895!5.14e-09!9;UBERON:0010092!5.14e-09!9;UBERON:0000025!7.35e-09!194;UBERON:0000200!9.08e-09!6;UBERON:0001871!9.55e-09!7;UBERON:0000064!2.40e-08!219;UBERON:0000475!8.02e-08!365;UBERON:0006331!1.48e-07!3;UBERON:0000988!1.72e-07!3;UBERON:0000349!1.77e-07!5;UBERON:0002240!3.54e-07!3;UBERON:0005383!3.61e-07!3;UBERON:0005382!3.61e-07!3;UBERON:0001872!3.70e-07!5;UBERON:0002771!6.72e-07!3|ontology_enrichment_uberon_v019=UBERON:0002037;4.90e-38;6!UBERON:0004733;1.65e-33;12!UBERON:0002028;1.65e-33;12!UBERON:0004732;5.53e-31;13!UBERON:0002336;8.64e-26;1!UBERON:0011215;8.64e-26;1!UBERON:0001018;8.64e-26;1!UBERON:0002473;8.64e-26;1!UBERON:0005340;8.64e-26;1!UBERON:0003544;8.64e-26;1!UBERON:0005970;8.64e-26;1!UBERON:0002316;8.64e-26;1!UBERON:0001020;8.64e-26;1!UBERON:0002437;8.64e-26;1!UBERON:0002680;1.17e-25;9!UBERON:0001895;1.17e-25;9!UBERON:0002360;1.29e-13;2!UBERON:0005162;1.29e-13;2!UBERON:0000122;1.29e-13;2!UBERON:0000094;1.29e-13;2!UBERON:0010743;1.29e-13;2!UBERON:0000073;6.65e-11;53!UBERON:0002616;6.65e-11;53!UBERON:0001896;1.60e-09;3!UBERON:0005290;1.60e-09;3!UBERON:0001017;5.47e-09;75!UBERON:0000955;1.93e-07;68!UBERON:0001016;4.72e-07;83!UBERON:0007023;5.78e-07;114|ontology_enrichment_uberon_v019_2=UBERON:0002037,4.90e-38,6;UBERON:0006215,4.90e-38,6;UBERON:0004733,1.87e-33,12;UBERON:0002028,1.87e-33,12;UBERON:0007277,1.87e-33,12;UBERON:0004732,6.21e-31,13;UBERON:0003076,6.78e-27,15;UBERON:0003057,6.78e-27,15;UBERON:0002336,5.93e-26,1;UBERON:0011215,5.93e-26,1;UBERON:0001018,5.93e-26,1;UBERON:0002473,5.93e-26,1;UBERON:0005340,5.93e-26,1;UBERON:0003544,5.93e-26,1;UBERON:0005970,5.93e-26,1;UBERON:0002316,5.93e-26,1;UBERON:0001020,5.93e-26,1;UBERON:0002437,5.93e-26,1;UBERON:0002680,1.17e-25,9;UBERON:0001895,1.17e-25,9;UBERON:0010092,1.17e-25,9;UBERON:0000073,1.21e-16,53;UBERON:0002616,1.21e-16,53;UBERON:0001049,8.91e-16,56;UBERON:0005068,8.91e-16,56;UBERON:0006241,8.91e-16,56;UBERON:0007135,8.91e-16,56;UBERON:0001017,1.21e-14,81;UBERON:0005162,1.07e-13,2;UBERON:0000122,1.07e-13,2;UBERON:0002360,1.37e-13,2;UBERON:0000094,1.37e-13,2;UBERON:0010743,1.37e-13,2;UBERON:0001016,3.24e-13,89;UBERON:0000955,7.12e-13,68;UBERON:0006238,7.12e-13,68;UBERON:0003075,7.14e-11,82;UBERON:0007284,7.14e-11,82;UBERON:0007023,1.15e-10,114;UBERON:0002346,2.24e-10,86;UBERON:0001896,1.81e-09,3;UBERON:0005290,1.81e-09,3;UBERON:0010096,1.81e-09,3;UBERON:0010371,1.32e-08,104;UBERON:0004121,5.88e-07,171;UBERON:0000924,5.88e-07,171;UBERON:0006601,5.88e-07,171;UBERON:0010314,8.63e-07,132|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0.486634870302636,0.189069634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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7079 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11823 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-10bp_to_uc003bwo.2_5end | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_7_at_TIMP4_5end | |||
|id=chr3:12200657..12200682,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.71e-75;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.74e-56!57;UBERON:0005068!2.74e-56!57;UBERON:0006241!2.74e-56!57;UBERON:0007135!2.74e-56!57;UBERON:0001017!1.20e-49!82;UBERON:0005743!6.71e-49!86;UBERON:0002616!3.01e-48!59;UBERON:0002346!1.43e-46!90;UBERON:0003075!3.69e-45!86;UBERON:0007284!3.69e-45!86;UBERON:0000073!4.03e-45!94;UBERON:0001016!4.03e-45!94;UBERON:0002780!1.77e-41!41;UBERON:0001890!1.77e-41!41;UBERON:0006240!1.77e-41!41;UBERON:0000955!8.02e-41!69;UBERON:0006238!8.02e-41!69;UBERON:0007023!1.63e-40!115;UBERON:0003080!2.78e-40!42;UBERON:0001893!5.79e-38!34;UBERON:0002020!7.20e-38!34;UBERON:0003528!7.20e-38!34;UBERON:0002791!3.36e-36!33;UBERON:0001869!4.70e-34!32;UBERON:0003056!6.48e-33!61;UBERON:0002619!1.00e-28!22;UBERON:0000153!4.02e-27!129;UBERON:0007811!4.02e-27!129;UBERON:0000033!2.34e-26!123;UBERON:0000924!1.62e-25!173;UBERON:0006601!1.62e-25!173;UBERON:0001950!4.12e-25!20;UBERON:0000956!9.48e-25!25;UBERON:0000203!9.48e-25!25;UBERON:0004121!3.50e-24!169;UBERON:0003076!1.42e-16!15;UBERON:0003057!1.42e-16!15;UBERON:0002308!6.34e-15!9;UBERON:0000125!6.34e-15!9;UBERON:0004733!1.61e-11!12;UBERON:0002028!1.61e-11!12;UBERON:0007277!1.61e-11!12;UBERON:0002420!1.66e-11!9;UBERON:0007245!1.66e-11!9;UBERON:0010009!1.66e-11!9;UBERON:0010011!1.66e-11!9;UBERON:0000454!1.66e-11!9;UBERON:0009663!3.71e-11!7;UBERON:0002021!7.19e-11!5;UBERON:0004732!1.70e-10!13;UBERON:0002298!4.83e-10!8;UBERON:0000369!3.85e-09!4;UBERON:0002435!3.85e-09!4;UBERON:0000204!3.85e-09!4;UBERON:0010082!3.85e-09!4;UBERON:0002680!5.14e-09!9;UBERON:0001895!5.14e-09!9;UBERON:0010092!5.14e-09!9;UBERON:0000025!7.35e-09!194;UBERON:0000200!9.08e-09!6;UBERON:0001871!9.55e-09!7;UBERON:0000064!2.40e-08!219;UBERON:0000475!8.02e-08!365;UBERON:0006331!1.48e-07!3;UBERON:0000988!1.72e-07!3;UBERON:0000349!1.77e-07!5;UBERON:0002240!3.54e-07!3;UBERON:0005383!3.61e-07!3;UBERON:0005382!3.61e-07!3;UBERON:0001872!3.70e-07!5;UBERON:0002771!6.72e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;4.90e-38;6!UBERON:0004733;1.65e-33;12!UBERON:0002028;1.65e-33;12!UBERON:0004732;5.53e-31;13!UBERON:0002336;8.64e-26;1!UBERON:0011215;8.64e-26;1!UBERON:0001018;8.64e-26;1!UBERON:0002473;8.64e-26;1!UBERON:0005340;8.64e-26;1!UBERON:0003544;8.64e-26;1!UBERON:0005970;8.64e-26;1!UBERON:0002316;8.64e-26;1!UBERON:0001020;8.64e-26;1!UBERON:0002437;8.64e-26;1!UBERON:0002680;1.17e-25;9!UBERON:0001895;1.17e-25;9!UBERON:0002360;1.29e-13;2!UBERON:0005162;1.29e-13;2!UBERON:0000122;1.29e-13;2!UBERON:0000094;1.29e-13;2!UBERON:0010743;1.29e-13;2!UBERON:0000073;6.65e-11;53!UBERON:0002616;6.65e-11;53!UBERON:0001896;1.60e-09;3!UBERON:0005290;1.60e-09;3!UBERON:0001017;5.47e-09;75!UBERON:0000955;1.93e-07;68!UBERON:0001016;4.72e-07;83!UBERON:0007023;5.78e-07;114 | |||
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|short_description=p7@TIMP4 | |||
}} |
Revision as of 21:08, 12 September 2013
Short description: | p7@TIMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_TIMP4_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -10bp_to_uc003bwo.2_5end |
EntrezGene: | TIMP4 |
HGNC: | 11823 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.