FFCP PHASE1:Hg19::chr5:5140462..5140482,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=170690|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17108|TSSclassifier=S|UniProt=Q8TE57,Q2XQZ0,F5H441|association_with_transcript=19bp_to_ENST00000274181,ENST00000511368,ENST00000536857,NM_139056,uc003jdj.1,uc003jdk.1,uc003jdl.2_5end|coexpression_cluster_id=C2822|description=CAGE_peak_3_at_ADAMTS16_5end|id=chr5:5140462..5140482,+|ontology_enrichment_celltype=CL:0002319!1.77e-12!25;CL:0000047!1.91e-12!8;CL:0000540!1.86e-09!6;CL:0000031!1.86e-09!6;CL:0000404!1.86e-09!6;CL:0000133!4.76e-09!59;CL:0000128!1.16e-08!7;CL:0000126!1.16e-08!7;CL:0000127!1.16e-08!7;CL:0002453!1.16e-08!7;CL:0002322!2.21e-07!5|ontology_enrichment_celltype_v019=CL:0002319;2.00e-23;25!CL:0000128;1.24e-21;7!CL:0000126;1.24e-21;7!CL:0000127;1.24e-21;7!CL:0000540;1.02e-16;6!CL:0000404;1.02e-16;6!CL:0002605;1.51e-13;3!CL:0000064;7.62e-12;3!CL:0000067;7.62e-12;3!CL:0005012;7.62e-12;3!CL:0002304;7.62e-12;3!CL:0000047;6.62e-10;2!CL:0000243;1.73e-08;15!CL:0000125;1.73e-08;15!CL:0002322;8.63e-08;5!CL:0000095;1.61e-07;17|ontology_enrichment_celltype_v019_2=CL:0000047,2.08e-24,8;CL:0002319,2.54e-23,25;CL:0000128,1.24e-21,7;CL:0000126,1.24e-21,7;CL:0000127,1.24e-21,7;CL:0002453,1.24e-21,7;CL:0000133,2.58e-17,59;CL:0000540,1.54e-16,6;CL:0000031,1.54e-16,6;CL:0000404,1.54e-16,6;CL:0002605,1.55e-13,3;CL:0000221,1.63e-13,72;CL:0000064,5.71e-12,3;CL:0000067,5.71e-12,3;CL:0005012,5.71e-12,3;CL:0002304,5.71e-12,3;CL:0000243,1.73e-08,15;CL:0000125,1.73e-08,15;CL:0000030,1.73e-08,15;CL:0000339,1.73e-08,15;CL:0002322,8.74e-08,5;CL:0000095,1.62e-07,17;CL:0000123,1.62e-07,17|ontology_enrichment_development_v019=CL:0000031;1.02e-16;6!UBERON:0006215;5.40e-13;3!CL:0000133;7.46e-11;59!CL:0000339;1.73e-08;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!3.55e-31!86;UBERON:0000073!4.31e-30!94;UBERON:0001016!4.31e-30!94;UBERON:0001017!2.05e-29!82;UBERON:0007023!4.92e-25!115;UBERON:0003075!1.48e-22!86;UBERON:0007284!1.48e-22!86;UBERON:0001049!2.42e-21!57;UBERON:0005068!2.42e-21!57;UBERON:0006241!2.42e-21!57;UBERON:0007135!2.42e-21!57;UBERON:0002346!6.77e-21!90;UBERON:0002616!4.38e-20!59;UBERON:0000955!1.05e-19!69;UBERON:0006238!1.05e-19!69;UBERON:0000956!8.56e-19!25;UBERON:0000203!8.56e-19!25;UBERON:0004121!2.23e-17!169;UBERON:0001869!1.50e-16!32;UBERON:0000924!1.53e-16!173;UBERON:0006601!1.53e-16!173;UBERON:0001893!1.62e-16!34;UBERON:0002791!1.44e-15!33;UBERON:0002020!5.46e-15!34;UBERON:0003528!5.46e-15!34;UBERON:0002619!6.28e-15!22;UBERON:0003056!1.17e-14!61;UBERON:0000153!1.56e-14!129;UBERON:0007811!1.56e-14!129;UBERON:0000033!1.81e-13!123;UBERON:0003080!2.39e-13!42;UBERON:0001950!5.26e-13!20;UBERON:0002780!1.60e-12!41;UBERON:0001890!1.60e-12!41;UBERON:0006240!1.60e-12!41;UBERON:0004733!2.33e-10!12;UBERON:0002028!2.33e-10!12;UBERON:0007277!2.33e-10!12;UBERON:0003076!9.78e-10!15;UBERON:0003057!9.78e-10!15;UBERON:0004732!2.33e-09!13;UBERON:0002680!9.14e-08!9;UBERON:0001895!9.14e-08!9;UBERON:0010092!9.14e-08!9;UBERON:0001871!1.11e-07!7;UBERON:0000922!1.72e-07!612;UBERON:0002037!4.13e-07!6;UBERON:0006215!4.13e-07!6;UBERON:0003135!6.05e-07!11;UBERON:0000481!9.92e-07!347|ontology_enrichment_uberon_v019=UBERON:0002037;2.09e-17;6!UBERON:0001778;7.62e-12;3!UBERON:0001775;7.62e-12;3!UBERON:0002680;1.69e-11;9!UBERON:0001895;1.69e-11;9!UBERON:0000488;5.27e-09;4!UBERON:0000922;1.34e-08;49!UBERON:0004733;1.55e-08;12!UBERON:0002028;1.55e-08;12!UBERON:0004732;7.49e-08;13|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.09e-17,6;UBERON:0006215,2.09e-17,6;UBERON:0001017,1.35e-16,81;UBERON:0001016,1.80e-14,89;UBERON:0001778,5.71e-12,3;UBERON:0001775,5.71e-12,3;UBERON:0002680,1.69e-11,9;UBERON:0001895,1.69e-11,9;UBERON:0010092,1.69e-11,9;UBERON:0003076,1.50e-09,15;UBERON:0003057,1.50e-09,15;UBERON:0001049,2.93e-09,56;UBERON:0005068,2.93e-09,56;UBERON:0006241,2.93e-09,56;UBERON:0007135,2.93e-09,56;UBERON:0000488,4.26e-09,4;UBERON:0003075,1.07e-08,82;UBERON:0007284,1.07e-08,82;UBERON:0004733,1.55e-08,12;UBERON:0002028,1.55e-08,12;UBERON:0007277,1.55e-08,12;UBERON:0000073,2.58e-08,53;UBERON:0002616,2.58e-08,53;UBERON:0002346,3.87e-08,86;UBERON:0004732,7.49e-08,13;UBERON:0004121,1.22e-07,171;UBERON:0000924,1.22e-07,171;UBERON:0006601,1.22e-07,171;UBERON:0000955,5.09e-07,68;UBERON:0006238,5.09e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.64853713614655,0,23.1956493893785,11.7356754723733,7.25434452886286,5.27279086298172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3858578411533,0.973269740605272,1.70162670895322,1.77383517970051,1.05401742831751,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0.908144565869588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=170690 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17108 | |||
|TSSclassifier=S | |||
|UniProt=Q8TE57,Q2XQZ0,F5H441 | |||
|association_with_transcript=19bp_to_ENST00000274181,ENST00000511368,ENST00000536857,NM_139056,uc003jdj.1,uc003jdk.1,uc003jdl.2_5end | |||
|coexpression_cluster_id=C2822 | |||
|description=CAGE_peak_3_at_ADAMTS16_5end | |||
|id=chr5:5140462..5140482,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.77e-12!25;CL:0000047!1.91e-12!8;CL:0000540!1.86e-09!6;CL:0000031!1.86e-09!6;CL:0000404!1.86e-09!6;CL:0000133!4.76e-09!59;CL:0000128!1.16e-08!7;CL:0000126!1.16e-08!7;CL:0000127!1.16e-08!7;CL:0002453!1.16e-08!7;CL:0002322!2.21e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002319;2.00e-23;25!CL:0000128;1.24e-21;7!CL:0000126;1.24e-21;7!CL:0000127;1.24e-21;7!CL:0000540;1.02e-16;6!CL:0000404;1.02e-16;6!CL:0002605;1.51e-13;3!CL:0000064;7.62e-12;3!CL:0000067;7.62e-12;3!CL:0005012;7.62e-12;3!CL:0002304;7.62e-12;3!CL:0000047;6.62e-10;2!CL:0000243;1.73e-08;15!CL:0000125;1.73e-08;15!CL:0002322;8.63e-08;5!CL:0000095;1.61e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.08e-24,8;CL:0002319,2.54e-23,25;CL:0000128,1.24e-21,7;CL:0000126,1.24e-21,7;CL:0000127,1.24e-21,7;CL:0002453,1.24e-21,7;CL:0000133,2.58e-17,59;CL:0000540,1.54e-16,6;CL:0000031,1.54e-16,6;CL:0000404,1.54e-16,6;CL:0002605,1.55e-13,3;CL:0000221,1.63e-13,72;CL:0000064,5.71e-12,3;CL:0000067,5.71e-12,3;CL:0005012,5.71e-12,3;CL:0002304,5.71e-12,3;CL:0000243,1.73e-08,15;CL:0000125,1.73e-08,15;CL:0000030,1.73e-08,15;CL:0000339,1.73e-08,15;CL:0002322,8.74e-08,5;CL:0000095,1.62e-07,17;CL:0000123,1.62e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000031;1.02e-16;6!UBERON:0006215;5.40e-13;3!CL:0000133;7.46e-11;59!CL:0000339;1.73e-08;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.55e-31!86;UBERON:0000073!4.31e-30!94;UBERON:0001016!4.31e-30!94;UBERON:0001017!2.05e-29!82;UBERON:0007023!4.92e-25!115;UBERON:0003075!1.48e-22!86;UBERON:0007284!1.48e-22!86;UBERON:0001049!2.42e-21!57;UBERON:0005068!2.42e-21!57;UBERON:0006241!2.42e-21!57;UBERON:0007135!2.42e-21!57;UBERON:0002346!6.77e-21!90;UBERON:0002616!4.38e-20!59;UBERON:0000955!1.05e-19!69;UBERON:0006238!1.05e-19!69;UBERON:0000956!8.56e-19!25;UBERON:0000203!8.56e-19!25;UBERON:0004121!2.23e-17!169;UBERON:0001869!1.50e-16!32;UBERON:0000924!1.53e-16!173;UBERON:0006601!1.53e-16!173;UBERON:0001893!1.62e-16!34;UBERON:0002791!1.44e-15!33;UBERON:0002020!5.46e-15!34;UBERON:0003528!5.46e-15!34;UBERON:0002619!6.28e-15!22;UBERON:0003056!1.17e-14!61;UBERON:0000153!1.56e-14!129;UBERON:0007811!1.56e-14!129;UBERON:0000033!1.81e-13!123;UBERON:0003080!2.39e-13!42;UBERON:0001950!5.26e-13!20;UBERON:0002780!1.60e-12!41;UBERON:0001890!1.60e-12!41;UBERON:0006240!1.60e-12!41;UBERON:0004733!2.33e-10!12;UBERON:0002028!2.33e-10!12;UBERON:0007277!2.33e-10!12;UBERON:0003076!9.78e-10!15;UBERON:0003057!9.78e-10!15;UBERON:0004732!2.33e-09!13;UBERON:0002680!9.14e-08!9;UBERON:0001895!9.14e-08!9;UBERON:0010092!9.14e-08!9;UBERON:0001871!1.11e-07!7;UBERON:0000922!1.72e-07!612;UBERON:0002037!4.13e-07!6;UBERON:0006215!4.13e-07!6;UBERON:0003135!6.05e-07!11;UBERON:0000481!9.92e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002037;2.09e-17;6!UBERON:0001778;7.62e-12;3!UBERON:0001775;7.62e-12;3!UBERON:0002680;1.69e-11;9!UBERON:0001895;1.69e-11;9!UBERON:0000488;5.27e-09;4!UBERON:0000922;1.34e-08;49!UBERON:0004733;1.55e-08;12!UBERON:0002028;1.55e-08;12!UBERON:0004732;7.49e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002037,2.09e-17,6;UBERON:0006215,2.09e-17,6;UBERON:0001017,1.35e-16,81;UBERON:0001016,1.80e-14,89;UBERON:0001778,5.71e-12,3;UBERON:0001775,5.71e-12,3;UBERON:0002680,1.69e-11,9;UBERON:0001895,1.69e-11,9;UBERON:0010092,1.69e-11,9;UBERON:0003076,1.50e-09,15;UBERON:0003057,1.50e-09,15;UBERON:0001049,2.93e-09,56;UBERON:0005068,2.93e-09,56;UBERON:0006241,2.93e-09,56;UBERON:0007135,2.93e-09,56;UBERON:0000488,4.26e-09,4;UBERON:0003075,1.07e-08,82;UBERON:0007284,1.07e-08,82;UBERON:0004733,1.55e-08,12;UBERON:0002028,1.55e-08,12;UBERON:0007277,1.55e-08,12;UBERON:0000073,2.58e-08,53;UBERON:0002616,2.58e-08,53;UBERON:0002346,3.87e-08,86;UBERON:0004732,7.49e-08,13;UBERON:0004121,1.22e-07,171;UBERON:0000924,1.22e-07,171;UBERON:0006601,1.22e-07,171;UBERON:0000955,5.09e-07,68;UBERON:0006238,5.09e-07,68 | |||
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|short_description=p3@ADAMTS16 | |||
}} |
Revision as of 15:48, 13 September 2013
Short description: | p3@ADAMTS16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ADAMTS16_5end |
Coexpression cluster: | C2822_Neural_Astrocyte_kidney_mesodermal_H9_cerebellum_Neurons |
Association with transcript: | 19bp_to_ENST00000274181, ENST00000511368, ENST00000536857, NM_139056, uc003jdj.1, uc003jdk.1, uc003jdl.2_5end |
EntrezGene: | ADAMTS16 |
HGNC: | 17108 |
UniProt: | Q8TE57Q2XQZ0F5H441 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.08e-24 | 8 |
neural cell | 2.54e-23 | 25 |
oligodendrocyte | 1.24e-21 | 7 |
macroglial cell | 1.24e-21 | 7 |
astrocyte | 1.24e-21 | 7 |
oligodendrocyte precursor cell | 1.24e-21 | 7 |
neurectodermal cell | 2.58e-17 | 59 |
neuron | 1.54e-16 | 6 |
neuroblast | 1.54e-16 | 6 |
electrically signaling cell | 1.54e-16 | 6 |
astrocyte of the cerebral cortex | 1.55e-13 | 3 |
ectodermal cell | 1.63e-13 | 72 |
ciliated cell | 5.71e-12 | 3 |
ciliated epithelial cell | 5.71e-12 | 3 |
multi-ciliated epithelial cell | 5.71e-12 | 3 |
non-pigmented ciliary epithelial cell | 5.71e-12 | 3 |
glial cell (sensu Vertebrata) | 1.73e-08 | 15 |
glial cell | 1.73e-08 | 15 |
glioblast | 1.73e-08 | 15 |
glioblast (sensu Vertebrata) | 1.73e-08 | 15 |
embryonic stem cell | 8.74e-08 | 5 |
neuron associated cell | 1.62e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.62e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 2.09e-17 | 6 |
rhombic lip | 2.09e-17 | 6 |
central nervous system | 1.35e-16 | 81 |
nervous system | 1.80e-14 | 89 |
ciliary epithelium | 5.71e-12 | 3 |
ciliary body | 5.71e-12 | 3 |
regional part of metencephalon | 1.69e-11 | 9 |
metencephalon | 1.69e-11 | 9 |
future metencephalon | 1.69e-11 | 9 |
posterior neural tube | 1.50e-09 | 15 |
chordal neural plate | 1.50e-09 | 15 |
neural tube | 2.93e-09 | 56 |
neural rod | 2.93e-09 | 56 |
future spinal cord | 2.93e-09 | 56 |
neural keel | 2.93e-09 | 56 |
atypical epithelium | 4.26e-09 | 4 |
neural plate | 1.07e-08 | 82 |
presumptive neural plate | 1.07e-08 | 82 |
segmental subdivision of hindbrain | 1.55e-08 | 12 |
hindbrain | 1.55e-08 | 12 |
presumptive hindbrain | 1.55e-08 | 12 |
regional part of nervous system | 2.58e-08 | 53 |
regional part of brain | 2.58e-08 | 53 |
neurectoderm | 3.87e-08 | 86 |
segmental subdivision of nervous system | 7.49e-08 | 13 |
ectoderm-derived structure | 1.22e-07 | 171 |
ectoderm | 1.22e-07 | 171 |
presumptive ectoderm | 1.22e-07 | 171 |
brain | 5.09e-07 | 68 |
future brain | 5.09e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.