FFCP PHASE1:Mm9::chr2:65506787..65506803,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=110876|HGNC=|MCL_coexpression_id=2|UniProt=|association_with_transcript=5bp_to_uc008jwn.2_5end|description=CAGE_peak_2_at_Scn2a1_5end|id=chr2:65506787..65506803,+|ontology_enrichment_celltype=CL:0000117!4.89e-13!23;CL:0000337!4.89e-13!23;CL:0000393!1.48e-12!39;CL:0000211!1.48e-12!39;CL:0000540!2.60e-11!33;CL:0000047!2.60e-11!33;CL:0000031!2.60e-11!33;CL:0000404!2.60e-11!33;CL:0000055!6.11e-10!50;CL:0000221!2.59e-09!44;CL:0000133!2.59e-09!44;CL:0002319!2.70e-09!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.11e-19,23;CL:0000337,5.11e-19,23;CL:0000393,1.21e-16,39;CL:0000211,1.21e-16,39;CL:0000540,5.18e-15,33;CL:0000047,5.18e-15,33;CL:0000031,5.18e-15,33;CL:0000404,5.18e-15,33;CL:0002319,3.33e-10,43;CL:0000221,9.11e-10,44;CL:0000133,9.11e-10,44;CL:0002321,9.29e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.89e-25!73;UBERON:0005743!6.89e-25!73;UBERON:0000073!4.70e-24!75;UBERON:0001016!4.70e-24!75;UBERON:0001049!8.07e-22!52;UBERON:0005068!8.07e-22!52;UBERON:0006241!8.07e-22!52;UBERON:0007135!8.07e-22!52;UBERON:0000955!1.62e-20!50;UBERON:0006238!1.62e-20!50;UBERON:0002616!5.72e-20!49;UBERON:0002346!6.87e-20!71;UBERON:0003075!6.87e-20!71;UBERON:0007284!6.87e-20!71;UBERON:0000033!1.50e-19!63;UBERON:0002020!6.84e-18!34;UBERON:0004121!6.91e-18!102;UBERON:0000924!6.91e-18!102;UBERON:0006601!6.91e-18!102;UBERON:0003080!5.16e-16!40;UBERON:0003056!6.02e-16!49;UBERON:0002780!1.79e-15!39;UBERON:0001890!1.79e-15!39;UBERON:0006240!1.79e-15!39;UBERON:0002791!8.97e-15!29;UBERON:0003528!8.97e-15!29;UBERON:0001893!8.97e-15!29;UBERON:0000956!2.17e-10!21;UBERON:0001869!2.17e-10!21;UBERON:0000203!2.17e-10!21;UBERON:0000153!5.38e-09!94;UBERON:0007811!7.43e-09!86;UBERON:0002619!1.59e-08!17;UBERON:0002021!2.24e-08!10;UBERON:0000411!2.24e-08!10;UBERON:0001950!2.24e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.57e-32,54;UBERON:0001017,3.47e-31,73;UBERON:0001016,8.49e-30,75;UBERON:0001049,1.09e-29,52;UBERON:0005068,1.09e-29,52;UBERON:0006241,1.09e-29,52;UBERON:0007135,1.09e-29,52;UBERON:0002020,4.36e-27,34;UBERON:0002346,1.66e-25,64;UBERON:0003075,1.66e-25,64;UBERON:0007284,1.66e-25,64;UBERON:0000955,7.22e-25,47;UBERON:0006238,7.22e-25,47;UBERON:0002616,4.54e-24,46;UBERON:0003528,2.61e-22,29;UBERON:0002791,2.61e-22,29;UBERON:0001893,2.61e-22,29;UBERON:0003080,2.70e-22,40;UBERON:0002780,1.76e-21,39;UBERON:0001890,1.76e-21,39;UBERON:0006240,1.76e-21,39;UBERON:0010371,2.52e-21,73;UBERON:0004121,3.00e-21,95;UBERON:0000924,3.00e-21,95;UBERON:0006601,3.00e-21,95;UBERON:0003056,3.47e-18,49;UBERON:0010314,8.69e-16,92;UBERON:0000956,1.32e-15,21;UBERON:0001869,1.32e-15,21;UBERON:0000203,1.32e-15,21;UBERON:0002619,9.20e-13,17;UBERON:0002021,6.26e-12,10;UBERON:0000411,6.26e-12,10;UBERON:0001950,6.26e-12,10;UBERON:0002420,7.32e-08,8;UBERON:0007245,7.32e-08,8;UBERON:0010009,7.32e-08,8;UBERON:0010011,7.32e-08,8;UBERON:0000454,7.32e-08,8;UBERON:0000025,8.64e-08,114;UBERON:0003076,9.19e-08,12;UBERON:0003057,9.19e-08,12;UBERON:0004111,7.02e-07,122|phase1_expression=2.24208385946712,0,0,0,0,0,0,0.645616617207881,0,0,0,0,0,0,0,0,0,0,0,0,3.656861476496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76255545165808,1.21652317463417,0.367093504323363,0.782391344348039,0.436050312760893,0.219686182734472,0,0.839918529752175,1.43752564364972,0,0,0,1.28629718017973,3.15186783932632,1.54701627683233,1.82084814773638,6.34789175126439,3.1691570175309,1.0165335962074,0.889294796111139,0.449949858640699,0.988866362566974,0,0.299600110518405,0.768436610643109,2.48855069540346,3.91517221161903,1.89292465216244,6.56997264128748,10.8225585066291,2.81728838194394,3.06705507258356,1.83843757322004,17.6185409599022,13.1517958227743,11.0596703944495,3.29715719325485,4.11694396210843,6.25096044668112,5.02529398202486,15.1945904708554,12.6822545654752,20.6240009831567,18.2235751422852,9.31997229126503,0.302904773332736,0.226714680320357,0.289864488701678,0,0,0,0,0,0.561777680527007,1.53387290320252,3.11743205523443,1.7666978725517,0.704217098883403,8.98285341900225,5.09610479413291,0,0,0,0,0.68510327831436,0,0.29688427812965,0.173485326766136,0,0.922461989024234,0.60289056221049,0.470354828542819,0.125666591329675,0.247194967734374,0.722996784599558,0,1.13236794963186,0.441683036920787,0.969750506270444,0,15.8101630386235,18.6407569063975,0,0,0,0,5.69204429738326,13.7250180845588,6.91098936620754,16.339486098074,15.3429274398198,10.1816141834184,8.4365456795234,0.611036183101898,0.248813941220186,0.505445516867349,0.841767423545896,0.130120442962704,0.459804208866946,0.540186389416048,0.90422890701429,0.816437989815934,1.66547836370305,0.843315521037559,2.58703370739016,0,0.756424320671277,0.879755620819744,0.657587197282725,1.11218899690239,1.74126083261083,1.4404749548556,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.462801338662135,0.232533944750408,0.536546802799238,0.467061369468678,0,0.492502392237286,0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| ||
|EntrezGene=110876 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt= | |||
|association_with_transcript=5bp_to_uc008jwn.2_5end | |||
|description=CAGE_peak_2_at_Scn2a1_5end | |||
|id=chr2:65506787..65506803,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.89e-13!23;CL:0000337!4.89e-13!23;CL:0000393!1.48e-12!39;CL:0000211!1.48e-12!39;CL:0000540!2.60e-11!33;CL:0000047!2.60e-11!33;CL:0000031!2.60e-11!33;CL:0000404!2.60e-11!33;CL:0000055!6.11e-10!50;CL:0000221!2.59e-09!44;CL:0000133!2.59e-09!44;CL:0002319!2.70e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.11e-19,23;CL:0000337,5.11e-19,23;CL:0000393,1.21e-16,39;CL:0000211,1.21e-16,39;CL:0000540,5.18e-15,33;CL:0000047,5.18e-15,33;CL:0000031,5.18e-15,33;CL:0000404,5.18e-15,33;CL:0002319,3.33e-10,43;CL:0000221,9.11e-10,44;CL:0000133,9.11e-10,44;CL:0002321,9.29e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.89e-25!73;UBERON:0005743!6.89e-25!73;UBERON:0000073!4.70e-24!75;UBERON:0001016!4.70e-24!75;UBERON:0001049!8.07e-22!52;UBERON:0005068!8.07e-22!52;UBERON:0006241!8.07e-22!52;UBERON:0007135!8.07e-22!52;UBERON:0000955!1.62e-20!50;UBERON:0006238!1.62e-20!50;UBERON:0002616!5.72e-20!49;UBERON:0002346!6.87e-20!71;UBERON:0003075!6.87e-20!71;UBERON:0007284!6.87e-20!71;UBERON:0000033!1.50e-19!63;UBERON:0002020!6.84e-18!34;UBERON:0004121!6.91e-18!102;UBERON:0000924!6.91e-18!102;UBERON:0006601!6.91e-18!102;UBERON:0003080!5.16e-16!40;UBERON:0003056!6.02e-16!49;UBERON:0002780!1.79e-15!39;UBERON:0001890!1.79e-15!39;UBERON:0006240!1.79e-15!39;UBERON:0002791!8.97e-15!29;UBERON:0003528!8.97e-15!29;UBERON:0001893!8.97e-15!29;UBERON:0000956!2.17e-10!21;UBERON:0001869!2.17e-10!21;UBERON:0000203!2.17e-10!21;UBERON:0000153!5.38e-09!94;UBERON:0007811!7.43e-09!86;UBERON:0002619!1.59e-08!17;UBERON:0002021!2.24e-08!10;UBERON:0000411!2.24e-08!10;UBERON:0001950!2.24e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,8.57e-32,54;UBERON:0001017,3.47e-31,73;UBERON:0001016,8.49e-30,75;UBERON:0001049,1.09e-29,52;UBERON:0005068,1.09e-29,52;UBERON:0006241,1.09e-29,52;UBERON:0007135,1.09e-29,52;UBERON:0002020,4.36e-27,34;UBERON:0002346,1.66e-25,64;UBERON:0003075,1.66e-25,64;UBERON:0007284,1.66e-25,64;UBERON:0000955,7.22e-25,47;UBERON:0006238,7.22e-25,47;UBERON:0002616,4.54e-24,46;UBERON:0003528,2.61e-22,29;UBERON:0002791,2.61e-22,29;UBERON:0001893,2.61e-22,29;UBERON:0003080,2.70e-22,40;UBERON:0002780,1.76e-21,39;UBERON:0001890,1.76e-21,39;UBERON:0006240,1.76e-21,39;UBERON:0010371,2.52e-21,73;UBERON:0004121,3.00e-21,95;UBERON:0000924,3.00e-21,95;UBERON:0006601,3.00e-21,95;UBERON:0003056,3.47e-18,49;UBERON:0010314,8.69e-16,92;UBERON:0000956,1.32e-15,21;UBERON:0001869,1.32e-15,21;UBERON:0000203,1.32e-15,21;UBERON:0002619,9.20e-13,17;UBERON:0002021,6.26e-12,10;UBERON:0000411,6.26e-12,10;UBERON:0001950,6.26e-12,10;UBERON:0002420,7.32e-08,8;UBERON:0007245,7.32e-08,8;UBERON:0010009,7.32e-08,8;UBERON:0010011,7.32e-08,8;UBERON:0000454,7.32e-08,8;UBERON:0000025,8.64e-08,114;UBERON:0003076,9.19e-08,12;UBERON:0003057,9.19e-08,12;UBERON:0004111,7.02e-07,122 | |||
|phase1_expression=2.24208385946712,0,0,0,0,0,0,0.645616617207881,0,0,0,0,0,0,0,0,0,0,0,0,3.656861476496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76255545165808,1.21652317463417,0.367093504323363,0.782391344348039,0.436050312760893,0.219686182734472,0,0.839918529752175,1.43752564364972,0,0,0,1.28629718017973,3.15186783932632,1.54701627683233,1.82084814773638,6.34789175126439,3.1691570175309,1.0165335962074,0.889294796111139,0.449949858640699,0.988866362566974,0,0.299600110518405,0.768436610643109,2.48855069540346,3.91517221161903,1.89292465216244,6.56997264128748,10.8225585066291,2.81728838194394,3.06705507258356,1.83843757322004,17.6185409599022,13.1517958227743,11.0596703944495,3.29715719325485,4.11694396210843,6.25096044668112,5.02529398202486,15.1945904708554,12.6822545654752,20.6240009831567,18.2235751422852,9.31997229126503,0.302904773332736,0.226714680320357,0.289864488701678,0,0,0,0,0,0.561777680527007,1.53387290320252,3.11743205523443,1.7666978725517,0.704217098883403,8.98285341900225,5.09610479413291,0,0,0,0,0.68510327831436,0,0.29688427812965,0.173485326766136,0,0.922461989024234,0.60289056221049,0.470354828542819,0.125666591329675,0.247194967734374,0.722996784599558,0,1.13236794963186,0.441683036920787,0.969750506270444,0,15.8101630386235,18.6407569063975,0,0,0,0,5.69204429738326,13.7250180845588,6.91098936620754,16.339486098074,15.3429274398198,10.1816141834184,8.4365456795234,0.611036183101898,0.248813941220186,0.505445516867349,0.841767423545896,0.130120442962704,0.459804208866946,0.540186389416048,0.90422890701429,0.816437989815934,1.66547836370305,0.843315521037559,2.58703370739016,0,0.756424320671277,0.879755620819744,0.657587197282725,1.11218899690239,1.74126083261083,1.4404749548556,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0.473489471170421,0.196764231747404,0.462801338662135,0.232533944750408,0.536546802799238,0.467061369468678,0,0.492502392237286,0.405344047729279,0.146199987425332,0.658650345873152,0.402619256281115,13.4585567081041,5.24813523134351,0,0,0.853153002140936,0.464473343720877,0.128867461322093,0.403367049246685,0.444756087689741,0.380451252225118,0,0.164698954724011,0.251335208800269,0.397912944082302,0.19496408711912,0,0.216138049874694,0,0.569003702859245,0.456994050438915,2.25415471346161,0.407302655690628,0.581857461502877,0.49095073923223,0.0632365371242573,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0.196558995113203,0,0.202860121388503,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.184753190166605,0.568474235311454,0,0.339490171550376,0.469380496577004,0.167506257441816,0.714130922658041,0.390267295715598,0.472905432318573,0.8858587585951,0.318909537314974,0.163863314715738,0.690739927463582,0.289298117163023,0,0,0,0,4.0137647496948,4.80567915028033,2.13115428989678,0.757412781613119,1.26203287766503,0.780877488593277,1.29254038639679,0,0,0.566153061577665,0.404810701674894,1.46127928955656,0.790575555893047,4.81981974632711,0.283880170416537,1.06839362200353,0.488660878060728,0.494910368917606,0,0.728341908464944,0.302323556964751,0.943025398779491,0.295301892880773,0.307435147943927,0.258428293168221,1.09060118843252,0.356497378384721,0.316036757935816,0,0,1.36175842301515,1.8006109403131,0.388076051348264,0.428674070063185,0.709360934569094,1.07021290561242,1.15184314421485,0.304464949114599,0,0,0.661585194164886,0,0.322928853391811,0.120625849856312,0.358117032009409,0.164140899745061,0,5.93360966433631,0.170870880797853,0.619160603889667,0.185194527369712,0.188368457004691,0,0,0.169978429993855,0,0.138199973804424,0.954670618015114,0.316335993581135,0.406638934253697,0.756037385752609,1.46361807210128,0.218362563746178,0.809186078308924,0.495920734352016,0.26175594198403,0.648074866458964,0,0,1.04661582230785,0.496375471371293,1.36115831840833,0.387479470433193,1.68956125490778,1.40828686374905,0.2604087696879,0.629156066554265,0.483168241652012,0,0,0.405450430580328,0.102710957164827,0.129920822977795,0,0,0,0.147689527174577,0,0,0.100826185136841,0.0974578807397524,0,0,0.226730383615211,0.887943813496259,0,0.335769232728157,0.579568782096571,0.93841237725591,0.915758121336325,0.428736758158132,0.501572104035363,31.0613513439387,37.2863441570813,44.6858500482729,41.4166169448287,34.2541259885321,32.4819375877571,37.1262375127493,31.0721630224712,32.6262534468627,27.4412965228465,0.93408612825759,0.399024873401031,1.53660245178721,0.486213434136588,0.628839487883947,0.919217542250071,1.11123363900808,1.44224540067226,2.24643446714271,1.26348605881899,1.77435509923168,1.69763707247469,1.03005658216871,1.21647789569252,0.976402972245426,1.42888107384922,1.73826488917283,1.54327376370964,2.88460130562315,1.76638704161277,1.37147700954166,1.77475806159337,1.90748951957857,1.16277133305863,1.78807822789128,1.18460451048347,0.73171189149109,1.31534855718921,1.08643291076689,0,0.949080144993393,1.37906275325789,1.22769312950907,0.929621047115796,0.964533054905707,1.49886346762768,1.16965804222704,2.14871054048298,0.9564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| |||
|short_description=p2@Scn2a1 | |||
}} |
Revision as of 00:18, 14 September 2013
Short description: | p2@Scn2a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Scn2a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 5bp_to_uc008jwn.2_5end |
EntrezGene: | Scn2a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.11e-19 | 23 |
neuroblast (sensu Vertebrata) | 5.11e-19 | 23 |
electrically responsive cell | 1.21e-16 | 39 |
electrically active cell | 1.21e-16 | 39 |
neuron | 5.18e-15 | 33 |
neuronal stem cell | 5.18e-15 | 33 |
neuroblast | 5.18e-15 | 33 |
electrically signaling cell | 5.18e-15 | 33 |
neural cell | 3.33e-10 | 43 |
ectodermal cell | 9.11e-10 | 44 |
neurectodermal cell | 9.11e-10 | 44 |
embryonic cell | 9.29e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.