FFCP PHASE1:Mm9::chr7:52625929..52625987,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=22342|HGNC=|MCL_coexpression_id=1|UniProt=O88951,Q8JZS0|association_with_transcript=0bp_to_ENSMUST00000003971,NM_011698,uc009guv.1_5end|description=CAGE_peak_1_at_Lin7b_5end|id=chr7:52625929..52625987,-|ontology_enrichment_celltype=CL:0000117!1.47e-11!23;CL:0000337!1.47e-11!23;CL:0000540!6.46e-09!33;CL:0000047!6.46e-09!33;CL:0000031!6.46e-09!33;CL:0000404!6.46e-09!33;CL:0000221!1.01e-07!44;CL:0000133!1.01e-07!44;CL:0002319!1.59e-07!43;CL:0000393!2.72e-07!39;CL:0000211!2.72e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.93e-14,23;CL:0000337,5.93e-14,23;CL:0000540,2.69e-09,33;CL:0000047,2.69e-09,33;CL:0000031,2.69e-09,33;CL:0000404,2.69e-09,33;CL:0000393,1.59e-07,39;CL:0000211,1.59e-07,39;CL:0000221,4.13e-07,44;CL:0000133,4.13e-07,44;CL:0002319,7.57e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.31e-25!73;UBERON:0005743!2.31e-25!73;UBERON:0001049!2.24e-24!52;UBERON:0005068!2.24e-24!52;UBERON:0006241!2.24e-24!52;UBERON:0007135!2.24e-24!52;UBERON:0004121!2.48e-24!102;UBERON:0000924!2.48e-24!102;UBERON:0006601!2.48e-24!102;UBERON:0000073!1.54e-23!75;UBERON:0001016!1.54e-23!75;UBERON:0000955!3.19e-23!50;UBERON:0006238!3.19e-23!50;UBERON:0002616!1.26e-22!49;UBERON:0000033!6.19e-22!63;UBERON:0002346!6.06e-21!71;UBERON:0003075!6.06e-21!71;UBERON:0007284!6.06e-21!71;UBERON:0003080!5.69e-18!40;UBERON:0002020!2.05e-17!34;UBERON:0002780!2.20e-17!39;UBERON:0001890!2.20e-17!39;UBERON:0006240!2.20e-17!39;UBERON:0003056!1.75e-15!49;UBERON:0002791!2.02e-14!29;UBERON:0003528!2.02e-14!29;UBERON:0001893!2.02e-14!29;UBERON:0007811!5.24e-10!86;UBERON:0000956!5.92e-10!21;UBERON:0001869!5.92e-10!21;UBERON:0000203!5.92e-10!21;UBERON:0000153!1.26e-09!94;UBERON:0002619!2.89e-09!17;UBERON:0002021!1.93e-08!10;UBERON:0000411!1.93e-08!10;UBERON:0001950!1.93e-08!10;UBERON:0003076!5.24e-07!12;UBERON:0003057!5.24e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.80e-32,54;UBERON:0001049,9.59e-30,52;UBERON:0005068,9.59e-30,52;UBERON:0006241,9.59e-30,52;UBERON:0007135,9.59e-30,52;UBERON:0001017,4.16e-29,73;UBERON:0001016,8.67e-28,75;UBERON:0000955,4.29e-25,47;UBERON:0006238,4.29e-25,47;UBERON:0004121,2.64e-24,95;UBERON:0000924,2.64e-24,95;UBERON:0006601,2.64e-24,95;UBERON:0002616,2.96e-24,46;UBERON:0002346,4.65e-23,64;UBERON:0003075,4.65e-23,64;UBERON:0007284,4.65e-23,64;UBERON:0010371,5.13e-22,73;UBERON:0003080,3.17e-21,40;UBERON:0002020,3.40e-21,34;UBERON:0002780,2.21e-20,39;UBERON:0001890,2.21e-20,39;UBERON:0006240,2.21e-20,39;UBERON:0003056,5.62e-17,49;UBERON:0003528,7.56e-17,29;UBERON:0002791,7.56e-17,29;UBERON:0001893,7.56e-17,29;UBERON:0010314,1.08e-16,92;UBERON:0002021,6.26e-12,10;UBERON:0000411,6.26e-12,10;UBERON:0001950,6.26e-12,10;UBERON:0002619,8.22e-11,17;UBERON:0000956,1.89e-10,21;UBERON:0001869,1.89e-10,21;UBERON:0000203,1.89e-10,21;UBERON:0003076,6.43e-09,12;UBERON:0003057,6.43e-09,12;UBERON:0004111,7.58e-09,122;UBERON:0002420,5.64e-08,8;UBERON:0007245,5.64e-08,8;UBERON:0010009,5.64e-08,8;UBERON:0010011,5.64e-08,8;UBERON:0000454,5.64e-08,8;UBERON:0000025,2.33e-07,114|phase1_expression=1.28119077683835,0,0,0,0,0.16787927191189,0.233612640595526,0,0.140788722151667,0,0,0,0.171200729931206,0,0.333109761815663,0,0,0.157731082679119,0,0,7.22867966284093,0.198581902401771,0,0,0,0,0,0,0.190023419456374,0,0,1.27006134691926,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.202753862439029,0.183546752161682,1.56478268869608,0.65407546914134,0.659058548203415,0.388859798148567,0.55994568650145,0,0,0,0.336093799142464,0,0,1.54701627683233,3.64169629547276,7.93486468908049,8.87363964908651,0,0.889294796111139,1.7997994345628,0.988866362566974,0,1.49800055259202,0.768436610643109,0.518448061542388,1.62007125998029,0.841299845405528,35.7063730504754,34.8972294703549,1.95985278743926,0.766763768145891,1.83843757322004,50.6533052597188,33.8371445925747,39.7840921133671,2.90149833006426,4.39140689291566,3.12548022334056,56.1157827992776,46.1465340225978,33.6156145108982,15.3206864446307,19.6472919502762,8.76077395378913,0,0,0,0.860423876981386,0,0,0,0,2.38755514223978,0.170430322578058,0,0.35333957451034,1.12674735821344,0,0,0,0,0,0,1.37020655662872,0,1.7813056687779,0,0.304465478312141,0.230615497256059,0.753613202763113,1.17588707135705,1.38233250462643,0.247194967734374,0,0,0.161766849947409,0,0,0,5.85561594023094,4.81727425670947,0.510914110417183,0,0,0,17.8250860891739,37.972550033946,4.39790232395025,35.9816342798012,40.9144731728529,30.3370545056958,23.0382593556216,0.101839363850316,0.373220911830279,2.27450482590307,1.68353484709179,0.130120442962704,0,0.180062129805349,0.30140963567143,0.204109497453984,0.768682321709099,0.468508622798644,1.03481348295606,0.431135985865684,0.189106080167819,0.703804496655795,0.657587197282725,0.556094498451196,0.348252166522167,0.823128545631774,0,0,0,0,0,0.234526059981096,0.180062061461015,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.350296027101508,0.16455984991348,0.32833492815819,0.891756905004413,1.02339991197733,0.878200461164203,0.536825675041487,32.5949420274397,1.85228302282712,0,0.264450566663544,0.213288250535234,0.464473343720877,0.257734922644187,0.201683524623343,0,0.380451252225118,0.949058123089023,0.164698954724011,0.754005626400808,0.397912944082302,0.974820435595601,0,0.216138049874694,0.597423819763102,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.140271639780637,0.316182685621286,0.738050739898011,1.09899109488962,0.493588655687202,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0.234690248288502,0.167506257441816,0,0,0.315270288212382,0.44292937929755,0,0,0.172684981865896,0,0,0,0.491764273019036,0.827810238914197,27.1330497079368,26.3726294832457,0,0,0.631016438832513,0.780877488593277,0.215423397732799,0.716906393857656,0,0,0,0.876767573733936,1.58115111178609,8.35435422696698,0.141940085208269,0.178065603667255,0.325773918707152,3.62934270539578,0,0,0,0.377210159511796,0.295301892880773,0,0,1.09060118843252,0,0.632073515871632,1.05418608574999,0,5.10659408630682,0.36012218806262,1.55230420539305,0.428674070063185,2.48276327099183,1.96205699362278,1.31639216481697,2.13125464380219,0.23467170806371,0,1.32317038832977,2.96795255294664,1.29171541356724,0.72375509913787,0.954978752025092,0.984845398470368,0.582961673259701,21.5093350332191,0.170870880797853,0,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.324016022465404,1.67270636811575,1.52853794622324,1.07891477107857,0.909188012978695,1.57053565190418,0.648074866458964,3.10669656543463,1.12738587736838,1.79419855252775,0.496375471371293,1.94451188344048,0.516639293910924,1.68956125490778,0.704143431874524,0.651021924219751,1.78260885523708,1.93267296660805,0.576060012515731,0.316011120628178,0.202725215290164,0,0,0,0.198681354781265,0,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,1.36038230169127,0.443971906748129,0.0897138566094757,0.167884616364078,1.9318959403219,2.81523713176773,2.38097111547445,0.214368379079066,0,63.8169582157285,56.1596788538756,60.726924424576,62.2108520084149,69.1933344968349,58.1653300990069,64.8021600222534,67.5481804836331,72.9559278464569,64.7200389689775,0.207574695168353,0.399024873401031,0.341467211508268,0.972426868273176,0.838452650511929,1.10306105070008,1.55572709461131,1.23621034343337,1.28367683836726,0.252697211763798,1.2673964994512,0.754505365544305,1.12369808963859,0.704276676453562,0.631790158511746,1.42888107384922,1.0429589335037,1.15745532278223,0.824171801606613,1.17759136107518,1.37147700954166,1.59728225543404,0.953744759789284,1.30811774969096,1.50575008664529,0.846146078916765,1.46342378298218,0.526139422875686,0.814824683075171,1.12228454331548,0.830445126869219,0.394017929502254,1.63692417267876,1.39443157067369,0.578719832943424,2.49810577937946,0.467863216890817,0.429742108096597,0.765153328275374,0.661774257358546,2.55054619182464|short_description=p1@Lin7b}} | ||
|EntrezGene=22342 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=O88951,Q8JZS0 | |||
|association_with_transcript=0bp_to_ENSMUST00000003971,NM_011698,uc009guv.1_5end | |||
|description=CAGE_peak_1_at_Lin7b_5end | |||
|id=chr7:52625929..52625987,- | |||
|ontology_enrichment_celltype=CL:0000117!1.47e-11!23;CL:0000337!1.47e-11!23;CL:0000540!6.46e-09!33;CL:0000047!6.46e-09!33;CL:0000031!6.46e-09!33;CL:0000404!6.46e-09!33;CL:0000221!1.01e-07!44;CL:0000133!1.01e-07!44;CL:0002319!1.59e-07!43;CL:0000393!2.72e-07!39;CL:0000211!2.72e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.93e-14,23;CL:0000337,5.93e-14,23;CL:0000540,2.69e-09,33;CL:0000047,2.69e-09,33;CL:0000031,2.69e-09,33;CL:0000404,2.69e-09,33;CL:0000393,1.59e-07,39;CL:0000211,1.59e-07,39;CL:0000221,4.13e-07,44;CL:0000133,4.13e-07,44;CL:0002319,7.57e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.31e-25!73;UBERON:0005743!2.31e-25!73;UBERON:0001049!2.24e-24!52;UBERON:0005068!2.24e-24!52;UBERON:0006241!2.24e-24!52;UBERON:0007135!2.24e-24!52;UBERON:0004121!2.48e-24!102;UBERON:0000924!2.48e-24!102;UBERON:0006601!2.48e-24!102;UBERON:0000073!1.54e-23!75;UBERON:0001016!1.54e-23!75;UBERON:0000955!3.19e-23!50;UBERON:0006238!3.19e-23!50;UBERON:0002616!1.26e-22!49;UBERON:0000033!6.19e-22!63;UBERON:0002346!6.06e-21!71;UBERON:0003075!6.06e-21!71;UBERON:0007284!6.06e-21!71;UBERON:0003080!5.69e-18!40;UBERON:0002020!2.05e-17!34;UBERON:0002780!2.20e-17!39;UBERON:0001890!2.20e-17!39;UBERON:0006240!2.20e-17!39;UBERON:0003056!1.75e-15!49;UBERON:0002791!2.02e-14!29;UBERON:0003528!2.02e-14!29;UBERON:0001893!2.02e-14!29;UBERON:0007811!5.24e-10!86;UBERON:0000956!5.92e-10!21;UBERON:0001869!5.92e-10!21;UBERON:0000203!5.92e-10!21;UBERON:0000153!1.26e-09!94;UBERON:0002619!2.89e-09!17;UBERON:0002021!1.93e-08!10;UBERON:0000411!1.93e-08!10;UBERON:0001950!1.93e-08!10;UBERON:0003076!5.24e-07!12;UBERON:0003057!5.24e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.80e-32,54;UBERON:0001049,9.59e-30,52;UBERON:0005068,9.59e-30,52;UBERON:0006241,9.59e-30,52;UBERON:0007135,9.59e-30,52;UBERON:0001017,4.16e-29,73;UBERON:0001016,8.67e-28,75;UBERON:0000955,4.29e-25,47;UBERON:0006238,4.29e-25,47;UBERON:0004121,2.64e-24,95;UBERON:0000924,2.64e-24,95;UBERON:0006601,2.64e-24,95;UBERON:0002616,2.96e-24,46;UBERON:0002346,4.65e-23,64;UBERON:0003075,4.65e-23,64;UBERON:0007284,4.65e-23,64;UBERON:0010371,5.13e-22,73;UBERON:0003080,3.17e-21,40;UBERON:0002020,3.40e-21,34;UBERON:0002780,2.21e-20,39;UBERON:0001890,2.21e-20,39;UBERON:0006240,2.21e-20,39;UBERON:0003056,5.62e-17,49;UBERON:0003528,7.56e-17,29;UBERON:0002791,7.56e-17,29;UBERON:0001893,7.56e-17,29;UBERON:0010314,1.08e-16,92;UBERON:0002021,6.26e-12,10;UBERON:0000411,6.26e-12,10;UBERON:0001950,6.26e-12,10;UBERON:0002619,8.22e-11,17;UBERON:0000956,1.89e-10,21;UBERON:0001869,1.89e-10,21;UBERON:0000203,1.89e-10,21;UBERON:0003076,6.43e-09,12;UBERON:0003057,6.43e-09,12;UBERON:0004111,7.58e-09,122;UBERON:0002420,5.64e-08,8;UBERON:0007245,5.64e-08,8;UBERON:0010009,5.64e-08,8;UBERON:0010011,5.64e-08,8;UBERON:0000454,5.64e-08,8;UBERON:0000025,2.33e-07,114 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0.16787927191189,0.233612640595526,0,0.140788722151667,0,0,0,0.171200729931206,0,0.333109761815663,0,0,0.157731082679119,0,0,7.22867966284093,0.198581902401771,0,0,0,0,0,0,0.190023419456374,0,0,1.27006134691926,0.61506478758457,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.202753862439029,0.183546752161682,1.56478268869608,0.65407546914134,0.659058548203415,0.388859798148567,0.55994568650145,0,0,0,0.336093799142464,0,0,1.54701627683233,3.64169629547276,7.93486468908049,8.87363964908651,0,0.889294796111139,1.7997994345628,0.988866362566974,0,1.49800055259202,0.768436610643109,0.518448061542388,1.62007125998029,0.841299845405528,35.7063730504754,34.8972294703549,1.95985278743926,0.766763768145891,1.83843757322004,50.6533052597188,33.8371445925747,39.7840921133671,2.90149833006426,4.39140689291566,3.12548022334056,56.1157827992776,46.1465340225978,33.6156145108982,15.3206864446307,19.6472919502762,8.76077395378913,0,0,0,0.860423876981386,0,0,0,0,2.38755514223978,0.170430322578058,0,0.35333957451034,1.12674735821344,0,0,0,0,0,0,1.37020655662872,0,1.7813056687779,0,0.304465478312141,0.230615497256059,0.753613202763113,1.17588707135705,1.38233250462643,0.247194967734374,0,0,0.161766849947409,0,0,0,5.85561594023094,4.81727425670947,0.510914110417183,0,0,0,17.8250860891739,37.972550033946,4.39790232395025,35.9816342798012,40.9144731728529,30.3370545056958,23.0382593556216,0.101839363850316,0.373220911830279,2.27450482590307,1.68353484709179,0.130120442962704,0,0.180062129805349,0.30140963567143,0.204109497453984,0.768682321709099,0.468508622798644,1.03481348295606,0.431135985865684,0.189106080167819,0.703804496655795,0.657587197282725,0.556094498451196,0.348252166522167,0.823128545631774,0,0,0,0,0,0.234526059981096,0.180062061461015,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.350296027101508,0.16455984991348,0.32833492815819,0.891756905004413,1.02339991197733,0.878200461164203,0.536825675041487,32.5949420274397,1.85228302282712,0,0.264450566663544,0.213288250535234,0.464473343720877,0.257734922644187,0.201683524623343,0,0.380451252225118,0.949058123089023,0.164698954724011,0.754005626400808,0.397912944082302,0.974820435595601,0,0.216138049874694,0.597423819763102,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.140271639780637,0.316182685621286,0.738050739898011,1.09899109488962,0.493588655687202,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0.234690248288502,0.167506257441816,0,0,0.315270288212382,0.44292937929755,0,0,0.172684981865896,0,0,0,0.491764273019036,0.827810238914197,27.1330497079368,26.3726294832457,0,0,0.631016438832513,0.780877488593277,0.215423397732799,0.716906393857656,0,0,0,0.876767573733936,1.58115111178609,8.35435422696698,0.141940085208269,0.178065603667255,0.325773918707152,3.62934270539578,0,0,0,0.377210159511796,0.295301892880773,0,0,1.09060118843252,0,0.632073515871632,1.05418608574999,0,5.10659408630682,0.36012218806262,1.55230420539305,0.428674070063185,2.48276327099183,1.96205699362278,1.31639216481697,2.13125464380219,0.23467170806371,0,1.32317038832977,2.96795255294664,1.29171541356724,0.72375509913787,0.954978752025092,0.984845398470368,0.582961673259701,21.5093350332191,0.170870880797853,0,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.324016022465404,1.67270636811575,1.52853794622324,1.07891477107857,0.909188012978695,1.57053565190418,0.648074866458964,3.10669656543463,1.12738587736838,1.79419855252775,0.496375471371293,1.94451188344048,0.516639293910924,1.68956125490778,0.704143431874524,0.651021924219751,1.78260885523708,1.93267296660805,0.576060012515731,0.316011120628178,0.202725215290164,0,0,0,0.198681354781265,0,0.147689527174577,0.201932899896295,0.0762068066549998,0.100826185136841,0,0.0962118416403295,0,1.36038230169127,0.443971906748129,0.0897138566094757,0.167884616364078,1.9318959403219,2.81523713176773,2.38097111547445,0.214368379079066,0,63.8169582157285,56.1596788538756,60.726924424576,62.2108520084149,69.1933344968349,58.1653300990069,64.8021600222534,67.5481804836331,72.9559278464569,64.7200389689775,0.207574695168353,0.399024873401031,0.341467211508268,0.972426868273176,0.838452650511929,1.10306105070008,1.55572709461131,1.23621034343337,1.28367683836726,0.252697211763798,1.2673964994512,0.754505365544305,1.12369808963859,0.704276676453562,0.631790158511746,1.42888107384922,1.0429589335037,1.15745532278223,0.824171801606613,1.17759136107518,1.37147700954166,1.59728225543404,0.953744759789284,1.30811774969096,1.50575008664529,0.846146078916765,1.46342378298218,0.526139422875686,0.814824683075171,1.12228454331548,0.830445126869219,0.394017929502254,1.63692417267876,1.39443157067369,0.578719832943424,2.49810577937946,0.467863216890817,0.429742108096597,0.765153328275374,0.661774257358546,2.55054619182464 | |||
|short_description=p1@Lin7b | |||
}} |
Revision as of 13:45, 14 September 2013
Short description: | p1@Lin7b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lin7b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000003971, NM_011698, uc009guv.1_5end |
EntrezGene: | Lin7b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.93e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.93e-14 | 23 |
neuron | 2.69e-09 | 33 |
neuronal stem cell | 2.69e-09 | 33 |
neuroblast | 2.69e-09 | 33 |
electrically signaling cell | 2.69e-09 | 33 |
electrically responsive cell | 1.59e-07 | 39 |
electrically active cell | 1.59e-07 | 39 |
ectodermal cell | 4.13e-07 | 44 |
neurectodermal cell | 4.13e-07 | 44 |
neural cell | 7.57e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.