FFCP PHASE1:Mm9::chr7:89079052..89079063,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=29877|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-143bp_to_ENSMUST00000149288_5end|description=CAGE_peak_6_at_Hdgfrp3_5end|id=chr7:89079052..89079063,-|ontology_enrichment_celltype=CL:0000117!1.63e-13!23;CL:0000337!1.63e-13!23;CL:0000540!1.91e-12!33;CL:0000047!1.91e-12!33;CL:0000031!1.91e-12!33;CL:0000404!1.91e-12!33;CL:0000393!6.03e-11!39;CL:0000211!6.03e-11!39;CL:0000221!2.00e-10!44;CL:0000133!2.00e-10!44;CL:0002319!2.44e-10!43;CL:0000055!6.83e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.70e-21,23;CL:0000337,3.70e-21,23;CL:0000540,2.68e-15,33;CL:0000047,2.68e-15,33;CL:0000031,2.68e-15,33;CL:0000404,2.68e-15,33;CL:0000393,2.74e-12,39;CL:0000211,2.74e-12,39;CL:0002319,9.34e-11,43;CL:0000221,2.04e-10,44;CL:0000133,2.04e-10,44;CL:0002612,7.83e-08,3;CL:0002610,1.01e-07,3;CL:0002613,1.84e-07,3;CL:0002614,7.42e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.42e-23!75;UBERON:0001016!7.42e-23!75;UBERON:0001017!7.54e-23!73;UBERON:0005743!7.54e-23!73;UBERON:0000033!6.27e-22!63;UBERON:0001049!4.88e-21!52;UBERON:0005068!4.88e-21!52;UBERON:0006241!4.88e-21!52;UBERON:0007135!4.88e-21!52;UBERON:0002346!8.02e-21!71;UBERON:0003075!8.02e-21!71;UBERON:0007284!8.02e-21!71;UBERON:0003056!4.03e-20!49;UBERON:0000955!9.54e-20!50;UBERON:0006238!9.54e-20!50;UBERON:0002020!3.14e-19!34;UBERON:0002616!3.27e-19!49;UBERON:0004121!3.68e-19!102;UBERON:0000924!3.68e-19!102;UBERON:0006601!3.68e-19!102;UBERON:0000153!6.55e-18!94;UBERON:0003080!2.07e-17!40;UBERON:0007811!2.95e-17!86;UBERON:0002780!8.71e-17!39;UBERON:0001890!8.71e-17!39;UBERON:0006240!8.71e-17!39;UBERON:0002791!7.70e-16!29;UBERON:0003528!7.70e-16!29;UBERON:0001893!7.70e-16!29;UBERON:0000956!3.34e-11!21;UBERON:0001869!3.34e-11!21;UBERON:0000203!3.34e-11!21;UBERON:0002619!1.57e-10!17;UBERON:0002021!7.26e-08!10;UBERON:0000411!7.26e-08!10;UBERON:0001950!7.26e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.24e-27,54;UBERON:0001017,6.41e-27,73;UBERON:0002020,2.88e-26,34;UBERON:0001016,5.50e-26,75;UBERON:0001049,3.99e-24,52;UBERON:0005068,3.99e-24,52;UBERON:0006241,3.99e-24,52;UBERON:0007135,3.99e-24,52;UBERON:0002346,3.28e-23,64;UBERON:0003075,3.28e-23,64;UBERON:0007284,3.28e-23,64;UBERON:0004121,4.74e-23,95;UBERON:0000924,4.74e-23,95;UBERON:0006601,4.74e-23,95;UBERON:0003528,4.44e-20,29;UBERON:0002791,4.44e-20,29;UBERON:0001893,4.44e-20,29;UBERON:0002021,4.47e-20,10;UBERON:0000411,4.47e-20,10;UBERON:0001950,4.47e-20,10;UBERON:0010371,1.92e-19,73;UBERON:0003056,3.97e-19,49;UBERON:0003080,1.08e-18,40;UBERON:0002780,2.46e-17,39;UBERON:0001890,2.46e-17,39;UBERON:0006240,2.46e-17,39;UBERON:0002616,2.79e-17,46;UBERON:0000955,8.53e-17,47;UBERON:0006238,8.53e-17,47;UBERON:0010314,6.35e-14,92;UBERON:0002619,3.43e-13,17;UBERON:0000956,2.54e-12,21;UBERON:0001869,2.54e-12,21;UBERON:0000203,2.54e-12,21;UBERON:0002420,2.46e-09,8;UBERON:0007245,2.46e-09,8;UBERON:0010009,2.46e-09,8;UBERON:0010011,2.46e-09,8;UBERON:0000454,2.46e-09,8;UBERON:0002240,2.52e-09,6;UBERON:0005174,2.52e-09,6;UBERON:0001137,2.52e-09,6;UBERON:0002950,1.52e-08,4;UBERON:0001891,1.52e-08,4;UBERON:0009616,1.52e-08,4;UBERON:0010286,1.52e-08,4;UBERON:0002257,7.83e-08,3;UBERON:0004684,1.01e-07,3;UBERON:0002275,1.01e-07,3;UBERON:0001948,1.03e-07,5;UBERON:0002315,1.03e-07,5;UBERON:0000025,2.02e-07,114;UBERON:0002038,7.42e-07,3;UBERON:0009663,7.42e-07,3;UBERON:0009661,7.42e-07,3;UBERON:0000125,7.42e-07,3;UBERON:0002308,7.42e-07,3|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,0,0.281577444303333,0.234064526321993,0.171217968225505,0.0797721589953364,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0,0.782391344348039,0,0.439372365468944,0.777719596297134,0.139986421625363,0,0,0,0.336093799142464,0.257259436035947,0.573066879877513,0,1.82084814773638,1.05798195854407,1.90149421051854,0.677689064138264,0,0,0,0,0,0,0.311068836925433,0.540023753326763,0.210324961351382,0.856952953211411,1.98781686856452,0.61245399607477,0.862609239164127,0.919218786610021,5.50579404996943,2.80912143787413,1.84327839907492,2.37395317914349,2.28719109006024,2.08365348222704,2.51264699101243,1.12552522006336,1.68078072554491,2.35702868378934,2.84743361598206,2.79599168737951,0.37863096666592,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0.170430322578058,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.230615497256059,0,0.352766121407114,0.125666591329675,0,0.144599356919912,0,0,0,0,0,0,0.209446706813455,0,0,0,0,1.64769703345305,0.457500602818626,0.879580464790051,2.08589184230732,3.58001640262463,1.0389402227978,2.27137768294861,0.611036183101898,0.124406970610093,0,0,0.780722657776222,0.459804208866946,1.0803727788321,1.35634336052144,1.08858398642125,0.512454881139399,0.937017245597288,0.517406741478031,0.862271971731369,0.189106080167819,0.703804496655795,0.219195732427575,0.278047249225598,0.348252166522167,0.2057821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| ||
|EntrezGene=29877 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt= | |||
|association_with_transcript=-143bp_to_ENSMUST00000149288_5end | |||
|description=CAGE_peak_6_at_Hdgfrp3_5end | |||
|id=chr7:89079052..89079063,- | |||
|ontology_enrichment_celltype=CL:0000117!1.63e-13!23;CL:0000337!1.63e-13!23;CL:0000540!1.91e-12!33;CL:0000047!1.91e-12!33;CL:0000031!1.91e-12!33;CL:0000404!1.91e-12!33;CL:0000393!6.03e-11!39;CL:0000211!6.03e-11!39;CL:0000221!2.00e-10!44;CL:0000133!2.00e-10!44;CL:0002319!2.44e-10!43;CL:0000055!6.83e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.70e-21,23;CL:0000337,3.70e-21,23;CL:0000540,2.68e-15,33;CL:0000047,2.68e-15,33;CL:0000031,2.68e-15,33;CL:0000404,2.68e-15,33;CL:0000393,2.74e-12,39;CL:0000211,2.74e-12,39;CL:0002319,9.34e-11,43;CL:0000221,2.04e-10,44;CL:0000133,2.04e-10,44;CL:0002612,7.83e-08,3;CL:0002610,1.01e-07,3;CL:0002613,1.84e-07,3;CL:0002614,7.42e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.42e-23!75;UBERON:0001016!7.42e-23!75;UBERON:0001017!7.54e-23!73;UBERON:0005743!7.54e-23!73;UBERON:0000033!6.27e-22!63;UBERON:0001049!4.88e-21!52;UBERON:0005068!4.88e-21!52;UBERON:0006241!4.88e-21!52;UBERON:0007135!4.88e-21!52;UBERON:0002346!8.02e-21!71;UBERON:0003075!8.02e-21!71;UBERON:0007284!8.02e-21!71;UBERON:0003056!4.03e-20!49;UBERON:0000955!9.54e-20!50;UBERON:0006238!9.54e-20!50;UBERON:0002020!3.14e-19!34;UBERON:0002616!3.27e-19!49;UBERON:0004121!3.68e-19!102;UBERON:0000924!3.68e-19!102;UBERON:0006601!3.68e-19!102;UBERON:0000153!6.55e-18!94;UBERON:0003080!2.07e-17!40;UBERON:0007811!2.95e-17!86;UBERON:0002780!8.71e-17!39;UBERON:0001890!8.71e-17!39;UBERON:0006240!8.71e-17!39;UBERON:0002791!7.70e-16!29;UBERON:0003528!7.70e-16!29;UBERON:0001893!7.70e-16!29;UBERON:0000956!3.34e-11!21;UBERON:0001869!3.34e-11!21;UBERON:0000203!3.34e-11!21;UBERON:0002619!1.57e-10!17;UBERON:0002021!7.26e-08!10;UBERON:0000411!7.26e-08!10;UBERON:0001950!7.26e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.24e-27,54;UBERON:0001017,6.41e-27,73;UBERON:0002020,2.88e-26,34;UBERON:0001016,5.50e-26,75;UBERON:0001049,3.99e-24,52;UBERON:0005068,3.99e-24,52;UBERON:0006241,3.99e-24,52;UBERON:0007135,3.99e-24,52;UBERON:0002346,3.28e-23,64;UBERON:0003075,3.28e-23,64;UBERON:0007284,3.28e-23,64;UBERON:0004121,4.74e-23,95;UBERON:0000924,4.74e-23,95;UBERON:0006601,4.74e-23,95;UBERON:0003528,4.44e-20,29;UBERON:0002791,4.44e-20,29;UBERON:0001893,4.44e-20,29;UBERON:0002021,4.47e-20,10;UBERON:0000411,4.47e-20,10;UBERON:0001950,4.47e-20,10;UBERON:0010371,1.92e-19,73;UBERON:0003056,3.97e-19,49;UBERON:0003080,1.08e-18,40;UBERON:0002780,2.46e-17,39;UBERON:0001890,2.46e-17,39;UBERON:0006240,2.46e-17,39;UBERON:0002616,2.79e-17,46;UBERON:0000955,8.53e-17,47;UBERON:0006238,8.53e-17,47;UBERON:0010314,6.35e-14,92;UBERON:0002619,3.43e-13,17;UBERON:0000956,2.54e-12,21;UBERON:0001869,2.54e-12,21;UBERON:0000203,2.54e-12,21;UBERON:0002420,2.46e-09,8;UBERON:0007245,2.46e-09,8;UBERON:0010009,2.46e-09,8;UBERON:0010011,2.46e-09,8;UBERON:0000454,2.46e-09,8;UBERON:0002240,2.52e-09,6;UBERON:0005174,2.52e-09,6;UBERON:0001137,2.52e-09,6;UBERON:0002950,1.52e-08,4;UBERON:0001891,1.52e-08,4;UBERON:0009616,1.52e-08,4;UBERON:0010286,1.52e-08,4;UBERON:0002257,7.83e-08,3;UBERON:0004684,1.01e-07,3;UBERON:0002275,1.01e-07,3;UBERON:0001948,1.03e-07,5;UBERON:0002315,1.03e-07,5;UBERON:0000025,2.02e-07,114;UBERON:0002038,7.42e-07,3;UBERON:0009663,7.42e-07,3;UBERON:0009661,7.42e-07,3;UBERON:0000125,7.42e-07,3;UBERON:0002308,7.42e-07,3 | |||
|phase1_expression=0.320297694209588,0.348975407639361,0,0,0,0,0,0,0.281577444303333,0.234064526321993,0.171217968225505,0.0797721589953364,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.101376931219515,0,0.782391344348039,0,0.439372365468944,0.777719596297134,0.139986421625363,0,0,0,0.336093799142464,0.257259436035947,0.573066879877513,0,1.82084814773638,1.05798195854407,1.90149421051854,0.677689064138264,0,0,0,0,0,0,0.311068836925433,0.540023753326763,0.210324961351382,0.856952953211411,1.98781686856452,0.61245399607477,0.862609239164127,0.919218786610021,5.50579404996943,2.80912143787413,1.84327839907492,2.37395317914349,2.28719109006024,2.08365348222704,2.51264699101243,1.12552522006336,1.68078072554491,2.35702868378934,2.84743361598206,2.79599168737951,0.37863096666592,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0.170430322578058,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0.173485326766136,0,0.230615497256059,0,0.352766121407114,0.125666591329675,0,0.144599356919912,0,0,0,0,0,0,0.209446706813455,0,0,0,0,1.64769703345305,0.457500602818626,0.879580464790051,2.08589184230732,3.58001640262463,1.0389402227978,2.27137768294861,0.611036183101898,0.124406970610093,0,0,0.780722657776222,0.459804208866946,1.0803727788321,1.35634336052144,1.08858398642125,0.512454881139399,0.937017245597288,0.517406741478031,0.862271971731369,0.189106080167819,0.703804496655795,0.219195732427575,0.278047249225598,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0,0.180062061461015,0.23674473558521,0.393528463494808,0.154267112887378,0.232533944750408,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0,0,0,0,0.841159794256509,1.54356918568927,0,0.264450566663544,1.2797295032114,0.464473343720877,0.128867461322093,0.201683524623343,0,0,0,0,0.502670417600539,0,0,0,0,0,0.189667900953082,0.571242563048644,0,0.203651327845314,0.193952487167626,0.49095073923223,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0,0.202860121388503,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0.234690248288502,0,0,0.195133647857799,0,0.44292937929755,0,0,0,0.144649058581512,0,0,0,0,0.963303539926752,1.64096361229084,0.327869890753351,0.504941854408746,0.315508219416257,0,0.430846795465598,0.477937595905104,0,0.566153061577665,0,0.876767573733936,1.18586333383957,0.963963949265421,0.425820255624806,0.178065603667255,0.162886959353576,0,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0.36012218806262,0.258717367565509,0.214337035031592,0.886701168211368,0.535106452806212,0.329098041204242,0.304464949114599,0,0,0.441056796109924,0,0,0.241251699712623,0,0,0,1.48340241608408,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0.203319467126849,0.108005340821801,0,0.655087691238533,0.134864346384821,0.0826534557253359,0,0,0,0,0,0.165458490457098,2.13896307178452,0.258319646955462,0,0.704143431874524,0.781226309063701,1.04859344425711,1.93267296660805,0.288030006257865,0,0.202725215290164,0.410843828659309,0.649604114888975,0.537080087002444,0.198681354781265,0.120195449519969,0.295379054349154,0.100966449948148,0.0762068066549998,0.302478555410522,0,0.288635524920988,0.116876902181569,0.226730383615211,0.221985953374065,0,0,0.386379188064381,0.187682475451182,0.183151624267265,0,0,3.3885110557024,2.30162618253588,2.29158205375759,1.20297227640581,4.7955776383945,3.7769694869485,1.35004500046361,1.80128481289688,1.81256963593682,1.03552062350364,0.62272408550506,0.399024873401031,1.02440163452481,0.729320151204882,0,1.10306105070008,0,0,0.64183841918363,0.252697211763798,0.50695859978048,0.188626341386076,0.280924522409647,0.256100609619477,0.402048282689293,0.476293691283074,0.579421629724277,0.38581844092741,0,0.441596760403192,0.685738504770831,0.354951612318675,0,0.436039249896986,0.188218760830661,0.169229215783353,0.182927972872773,0.263069711437843,0.407412341537585,0.561142271657738,0,0.29551344712669,0.409231043169689,0.619747364743864,0.385813221962283,0,0.233931608445408,0.429742108096597,0.382576664137687,0.220591419119515,0 | |||
|short_description=p6@Hdgfrp3 | |||
}} |
Revision as of 14:22, 14 September 2013
Short description: | p6@Hdgfrp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Hdgfrp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -143bp_to_ENSMUST00000149288_5end |
EntrezGene: | Hdgfrp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.70e-21 | 23 |
neuroblast (sensu Vertebrata) | 3.70e-21 | 23 |
neuron | 2.68e-15 | 33 |
neuronal stem cell | 2.68e-15 | 33 |
neuroblast | 2.68e-15 | 33 |
electrically signaling cell | 2.68e-15 | 33 |
electrically responsive cell | 2.74e-12 | 39 |
electrically active cell | 2.74e-12 | 39 |
neural cell | 9.34e-11 | 43 |
ectodermal cell | 2.04e-10 | 44 |
neurectodermal cell | 2.04e-10 | 44 |
neuron of the ventral spinal cord | 7.83e-08 | 3 |
raphe nuclei neuron | 1.01e-07 | 3 |
striatum neuron | 1.84e-07 | 3 |
neuron of the substantia nigra | 7.42e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.