FFCP PHASE1:Hg19::chr13:37494275..37494304,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4093 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6774 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=70bp_to_ENST00000350148_5end | |||
|coexpression_cluster_id=C3369 | |||
|description=CAGE_peak_2_at_SMAD9_5end | |||
|id=chr13:37494275..37494304,- | |||
|ontology_enrichment_celltype=CL:0000055!3.99e-07!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!3.10e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;1.24e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.12e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.29e-20!115;UBERON:0000073!3.89e-15!94;UBERON:0001016!3.89e-15!94;UBERON:0005743!4.26e-13!86;UBERON:0002346!2.50e-12!90;UBERON:0000475!2.65e-12!365;UBERON:0001049!1.27e-11!57;UBERON:0005068!1.27e-11!57;UBERON:0006241!1.27e-11!57;UBERON:0007135!1.27e-11!57;UBERON:0001017!2.19e-11!82;UBERON:0003075!2.43e-10!86;UBERON:0007284!2.43e-10!86;UBERON:0000468!5.09e-10!659;UBERON:0002780!3.85e-09!41;UBERON:0001890!3.85e-09!41;UBERON:0006240!3.85e-09!41;UBERON:0000483!4.67e-09!309;UBERON:0000119!8.48e-09!312;UBERON:0000955!9.06e-09!69;UBERON:0006238!9.06e-09!69;UBERON:0003080!1.28e-08!42;UBERON:0000481!1.29e-08!347;UBERON:0000924!1.65e-08!173;UBERON:0006601!1.65e-08!173;UBERON:0002616!2.76e-08!59;UBERON:0004111!4.45e-08!241;UBERON:0000025!4.48e-08!194;UBERON:0000477!9.94e-08!286;UBERON:0003056!1.07e-07!61;UBERON:0001893!1.21e-07!34;UBERON:0002020!1.28e-07!34;UBERON:0003528!1.28e-07!34;UBERON:0002791!2.21e-07!33;UBERON:0004121!3.62e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.63e-08;9!UBERON:0000042;2.63e-08;9!UBERON:0003688;1.20e-07;6!UBERON:0002358;1.20e-07;6!UBERON:0003684;1.20e-07;6!UBERON:0001178;1.20e-07;6!UBERON:0002050;8.31e-07;5!UBERON:0005423;8.31e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.23e-20,114;UBERON:0002346,1.32e-13,86;UBERON:0001016,2.71e-13,89;UBERON:0001049,1.80e-11,56;UBERON:0005068,1.80e-11,56;UBERON:0006241,1.80e-11,56;UBERON:0007135,1.80e-11,56;UBERON:0010314,6.27e-11,132;UBERON:0003075,7.21e-11,82;UBERON:0007284,7.21e-11,82;UBERON:0001017,1.12e-10,81;UBERON:0000073,1.82e-09,53;UBERON:0002616,1.82e-09,53;UBERON:0011216,4.30e-09,223;UBERON:0004121,8.56e-09,171;UBERON:0000924,8.56e-09,171;UBERON:0006601,8.56e-09,171;UBERON:0010371,9.53e-09,104;UBERON:0000955,1.29e-07,68;UBERON:0006238,1.29e-07,68;UBERON:0003688,1.55e-07,6;UBERON:0002358,1.55e-07,6;UBERON:0003684,1.55e-07,6;UBERON:0001178,1.55e-07,6;UBERON:0002780,1.73e-07,41;UBERON:0001890,1.73e-07,41;UBERON:0003080,1.73e-07,41;UBERON:0006240,1.73e-07,41;UBERON:0000966,6.45e-07,6;UBERON:0005388,6.45e-07,6;UBERON:0001802,6.45e-07,6;UBERON:0003056,7.89e-07,61;UBERON:0004457,8.60e-07,12;UBERON:0000042,8.60e-07,12 | |||
|phase1_expression=5.81370813665781,5.35251309727458,5.49722175974288,3.00219895059391,4.46961094427288,4.36169262050184,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0,0,0.37129905888014,0.331397375727916,0,0,0,0.487932798790507,1.10808952269109,0.816002764977012,0.313454721478088,0.286235987131057,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,2.68280343881454,1.66221330396589,4.69870898099936,2.00535164254356,3.18662341713812,2.3858578411533,0,0.189069634328136,0.221729397462564,0.351339142772504,1.37528029272598,0,0,0,0,0,0,0,0.371457501329565,0,0,0.347140501607594,0,0.838998872419812,0,0.208994966536811,0,0.35576626268671,0,1.20848795132744,0,0.732186172644509,0,0,0.535798369704479,0.44905874525234,0.450445921933289,0,0,0.366403487860815,0,0,0,0,0.506522046658319,0,1.72101972449288,1.41867352879343,0,2.1349799145941,0.24666754841716,0.622422070799533,1.34710672069688,2.7788523529288,0.151357427644931,0,0,0.312160076830321,0,0.298897361103602,0.23486899728753,0,0.280901613404497,0,0,0,0,0.494533858557114,0.910161361938026,0,0,0.250237039743928,0,0.877955241761676,0,0.150238058906597,0.113432183160021,4.48474089222155,0.85422955527427,0.423863802319124,3.00091096084402,0.412210116953756,1.28820270022815,0.744467425326359,2.36286865137773,4.77441325289873,4.29137416214995,0.460249493211497,0.969876340912871,2.84007674013291,2.92181084860157,1.3564847384839,0,0,0,0,0,0.348581828608555,0.621966330092223,0.252320850875628,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0.236613600079688,0,0,0.110293972732394,0.217879444092406,0,0,0,0,0.738155454624648,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0.514703430895577,0,0,0.100528972411631,0,0,0,0,0.927443239800615,0.469634776943287,0.866198686566443,0.462985512576611,1.33177906564219,0,0,0,0,0,0,0,0,0,0,0,0,0.616339038092582,0,0,0,0.507983154337352,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0,0.258543431515556,0,0,1.32969058292435,0,1.28603687131071,0,0.799266537048298,1.14382394926518,2.17048642156577,0.823240336780769,0,1.77695974371273,0,0,0.871533458600294,1.3996218765488,0,0,0,0.718874566474748,1.14861935834114,1.42636905040718,0.723906533337896,1.43833425785268,2.32779252211864,0,0,0,0,2.54094624222463,2.60279707715243,5.41302168944387,0.670065061337395,3.18969375826582,0,0,0,0.36807447515742,0.500170521059677,0,0.207970861530807,0.178428988797162,0.157702415033935,0.117141414992713,0.300946099727719,0,1.03473071292505,0.664225598535437,0.184369168541703,0.173767228936166,0.195801157462741,0.686286847621712,0,0,0,0,0,0,6.4508030032882,4.45039722535381,4.77122160536225,3.84417447767103,7.16390148693385,2.0911009748669,5.93672265779964,0,0,0.0821271560138091,0,0.929683027679674,0,0,0.0920809889358963,0,0.364182336013434,1.70461739447251,0,0.0770153371044148,0,0,0,2.27466768141793,0.510281115829547,0.863663664408557,3.08454505380579,0,0,0,0,0,0,0,3.84675187674584,2.62411716559765,1.62689197332152,1.03041011647722,1.09883357782012,0.82509499920588,0,0,1.6068392984416,0,0.616194468458578,0.460511024178389,0.275673144969061,0.644521469209642,0.435050081742686,0.596586391912706,0.0890320356467374,0.165284915360978,0,0,0,0.929691098594572,0.62962469366128,0,0.616067160352178,0,0.869932992075073,0.18532421910392,0.715624433709956,0,0,0,0,0.855877976067841,0.636406495851874,0,0.719489830333259,0.274537029736055,0.589062011728432,0.404364963146632,3.17020642346017,0,0,0,1.05650146756755,0.136499911407986,0,0,1.65409603063837,1.99031692572366,0.876901770507525,0,0,0,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,4.22215270595328,0.987884678879706,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,4.91390727186376,0,0,0.185803175125719,0.144269212976445,0,0.318852545457645,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,1.02555725490326,0.36408156524854,0,0,0,0,0,1.9882952955326,3.37606599385231,0,0,0,4.78195171802567,2.48655523978033,10.077309914171,0.920418142519393,0,0.311039587661807,0,0,0,2.46608514092334,0,4.44547960578548,0,3.33965153382665,0,0,0,0,0.341380344856499,0.254253650292766,0,2.41320361269025,6.12369688104834,2.2571249341328,0.885741385813839,1.32656082487949,0,1.99042667876204,0,0.87754158861589,1.30726156222788,1.39423744278603,2.07765697960252,0,0,0.0897576444097721,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,1.08194319871046,1.99052386215701,1.85760885457012,3.66618086960175,0.296521128680622,0.123563938946503,0.208843899010911,4.04406797884062,1.60515529459758,1.87411556580271,0.364909578431332,0,0,1.57833761139756,0,1.22429104652196,4.23350083510869,0.150323419414493,0.311064574191741,0,0,0,0,0,0,0,0,0,2.79562669187248,0.171986032471617,0,0,0,3.006659511141,0,1.35588444468319,0.137041924646751,0.19871461170299,1.5827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| |||
|short_description=p2@SMAD9 | |||
}} |
Revision as of 17:21, 11 January 2014
Short description: | p2@SMAD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SMAD9_5end |
Coexpression cluster: | C3369_peripheral_thyroid_medulloblastoma_argyrophil_neuroblastoma_Adipocyte_neuroectodermal |
Association with transcript: | 70bp_to_ENST00000350148_5end |
EntrezGene: | SMAD9 |
HGNC: | 6774 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.23e-20 | 114 |
neurectoderm | 1.32e-13 | 86 |
nervous system | 2.71e-13 | 89 |
neural tube | 1.80e-11 | 56 |
neural rod | 1.80e-11 | 56 |
future spinal cord | 1.80e-11 | 56 |
neural keel | 1.80e-11 | 56 |
structure with developmental contribution from neural crest | 6.27e-11 | 132 |
neural plate | 7.21e-11 | 82 |
presumptive neural plate | 7.21e-11 | 82 |
central nervous system | 1.12e-10 | 81 |
regional part of nervous system | 1.82e-09 | 53 |
regional part of brain | 1.82e-09 | 53 |
organ system subdivision | 4.30e-09 | 223 |
ectoderm-derived structure | 8.56e-09 | 171 |
ectoderm | 8.56e-09 | 171 |
presumptive ectoderm | 8.56e-09 | 171 |
ecto-epithelium | 9.53e-09 | 104 |
brain | 1.29e-07 | 68 |
future brain | 1.29e-07 | 68 |
omentum | 1.55e-07 | 6 |
peritoneum | 1.55e-07 | 6 |
abdominal cavity | 1.55e-07 | 6 |
visceral peritoneum | 1.55e-07 | 6 |
regional part of forebrain | 1.73e-07 | 41 |
forebrain | 1.73e-07 | 41 |
anterior neural tube | 1.73e-07 | 41 |
future forebrain | 1.73e-07 | 41 |
retina | 6.45e-07 | 6 |
photoreceptor array | 6.45e-07 | 6 |
posterior segment of eyeball | 6.45e-07 | 6 |
pre-chordal neural plate | 7.89e-07 | 61 |
cavity lining | 8.60e-07 | 12 |
serous membrane | 8.60e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.12e-09 | 10 |