FFCP PHASE1:Hg19::chr1:110564357..110564369,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:110564357..110564369,+ | |||
|coexpression_cluster_id=C1033 | |coexpression_cluster_id=C1033 | ||
|description=CAGE_peak_at_chr1:110564357..110564369,+ | |description=CAGE_peak_at_chr1:110564357..110564369,+ | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.31e-09;3!UBERON:0003057;9.31e-09;3!UBERON:0006215;1.26e-08;3 | |ontology_enrichment_development_v019=UBERON:0006241;9.31e-09;3!UBERON:0003057;9.31e-09;3!UBERON:0006215;1.26e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.59e-22!57;UBERON:0005068!7.59e-22!57;UBERON:0006241!7.59e-22!57;UBERON:0007135!7.59e-22!57;UBERON:0003075!3.12e-18!86;UBERON:0007284!3.12e-18!86;UBERON:0002346!8.12e-18!90;UBERON:0002616!1.37e-17!59;UBERON:0000955!4.74e-17!69;UBERON:0006238!4.74e-17!69;UBERON:0001017!5.21e-16!82;UBERON:0003080!5.52e-16!42;UBERON:0007023!1.47e-15!115;UBERON:0005743!1.59e-15!86;UBERON:0000073!1.63e-15!94;UBERON:0001016!1.63e-15!94;UBERON:0002780!6.17e-15!41;UBERON:0001890!6.17e-15!41;UBERON:0006240!6.17e-15!41;UBERON:0002020!4.07e-13!34;UBERON:0003528!4.07e-13!34;UBERON:0002791!1.23e-11!33;UBERON:0002298!2.07e-11!8;UBERON:0001893!3.95e-11!34;UBERON:0003056!5.94e-11!61;UBERON:0001869!6.90e-10!32;UBERON:0004121!1.40e-09!169;UBERON:0000924!1.45e-09!173;UBERON:0006601!1.45e-09!173;UBERON:0000033!9.11e-09!123;UBERON:0002619!5.21e-08!22;UBERON:0000153!7.55e-08!129;UBERON:0007811!7.55e-08!129;UBERON:0000956!9.86e-08!25;UBERON:0000203!9.86e-08!25;UBERON:0002308!1.30e-07!9;UBERON:0000125!1.30e-07!9;UBERON:0003076!4.14e-07!15;UBERON:0003057!4.14e-07!15 | |ontology_enrichment_uberon=UBERON:0001049!7.59e-22!57;UBERON:0005068!7.59e-22!57;UBERON:0006241!7.59e-22!57;UBERON:0007135!7.59e-22!57;UBERON:0003075!3.12e-18!86;UBERON:0007284!3.12e-18!86;UBERON:0002346!8.12e-18!90;UBERON:0002616!1.37e-17!59;UBERON:0000955!4.74e-17!69;UBERON:0006238!4.74e-17!69;UBERON:0001017!5.21e-16!82;UBERON:0003080!5.52e-16!42;UBERON:0007023!1.47e-15!115;UBERON:0005743!1.59e-15!86;UBERON:0000073!1.63e-15!94;UBERON:0001016!1.63e-15!94;UBERON:0002780!6.17e-15!41;UBERON:0001890!6.17e-15!41;UBERON:0006240!6.17e-15!41;UBERON:0002020!4.07e-13!34;UBERON:0003528!4.07e-13!34;UBERON:0002791!1.23e-11!33;UBERON:0002298!2.07e-11!8;UBERON:0001893!3.95e-11!34;UBERON:0003056!5.94e-11!61;UBERON:0001869!6.90e-10!32;UBERON:0004121!1.40e-09!169;UBERON:0000924!1.45e-09!173;UBERON:0006601!1.45e-09!173;UBERON:0000033!9.11e-09!123;UBERON:0002619!5.21e-08!22;UBERON:0000153!7.55e-08!129;UBERON:0007811!7.55e-08!129;UBERON:0000956!9.86e-08!25;UBERON:0000203!9.86e-08!25;UBERON:0002308!1.30e-07!9;UBERON:0000125!1.30e-07!9;UBERON:0003076!4.14e-07!15;UBERON:0003057!4.14e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0004733;2.60e-17;12!UBERON:0002028;2.60e-17;12!UBERON:0004732;4.90e-16;13!UBERON:0002298;6.97e-16;6!UBERON:0002148;1.48e-12;2!UBERON:0006331;1.48e-12;2!UBERON:0009662;1.48e-12;2!UBERON:0001954;2.74e-12;2!UBERON:0003022;2.74e-12;2!UBERON:0002421;2.74e-12;2!UBERON:0002600;2.74e-12;2!UBERON:0002680;7.77e-11;9!UBERON:0001895;7.77e-11;9!UBERON:0000988;8.31e-09;3!UBERON:0001896;9.31e-09;3!UBERON:0002240;9.31e-09;3!UBERON:0005174;9.31e-09;3!UBERON:0005290;9.31e-09;3!UBERON:0001137;9.31e-09;3 | |ontology_enrichment_uberon_v019=UBERON:0004733;2.60e-17;12!UBERON:0002028;2.60e-17;12!UBERON:0004732;4.90e-16;13!UBERON:0002298;6.97e-16;6!UBERON:0002148;1.48e-12;2!UBERON:0006331;1.48e-12;2!UBERON:0009662;1.48e-12;2!UBERON:0001954;2.74e-12;2!UBERON:0003022;2.74e-12;2!UBERON:0002421;2.74e-12;2!UBERON:0002600;2.74e-12;2!UBERON:0002680;7.77e-11;9!UBERON:0001895;7.77e-11;9!UBERON:0000988;8.31e-09;3!UBERON:0001896;9.31e-09;3!UBERON:0002240;9.31e-09;3!UBERON:0005174;9.31e-09;3!UBERON:0005290;9.31e-09;3!UBERON:0001137;9.31e-09;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,4.68e-24,15;UBERON:0003057,4.68e-24,15;UBERON:0004733,2.46e-17,12;UBERON:0002028,2.46e-17,12;UBERON:0007277,2.46e-17,12;UBERON:0004732,4.65e-16,13;UBERON:0002298,6.71e-16,6;UBERON:0002148,1.48e-12,2;UBERON:0006331,1.48e-12,2;UBERON:0009662,1.48e-12,2;UBERON:0001954,2.07e-12,2;UBERON:0003022,2.07e-12,2;UBERON:0002421,2.07e-12,2;UBERON:0002600,2.07e-12,2;UBERON:0002680,7.58e-11,9;UBERON:0001895,7.58e-11,9;UBERON:0010092,7.58e-11,9;UBERON:0001049,6.32e-10,56;UBERON:0005068,6.32e-10,56;UBERON:0006241,6.32e-10,56;UBERON:0007135,6.32e-10,56;UBERON:0000988,8.31e-09,3;UBERON:0001896,8.96e-09,3;UBERON:0005290,8.96e-09,3;UBERON:0010096,8.96e-09,3;UBERON:0002240,9.66e-09,3;UBERON:0005174,9.66e-09,3;UBERON:0001137,9.66e-09,3;UBERON:0000073,5.83e-07,53;UBERON:0002616,5.83e-07,53;UBERON:0001017,7.57e-07,81;UBERON:0003075,7.57e-07,82;UBERON:0007284,7.57e-07,82 | |||
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|short_description=p@chr1:110564357..110564369,+ | |short_description=p@chr1:110564357..110564369,+ | ||
}} | }} |
Latest revision as of 19:28, 27 July 2015
Short description: | p@chr1:110564357..110564369, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:110564357..110564369, + |
Coexpression cluster: | C1033_locus_medulla_spinal_globus_amygdala_pineal_hippocampus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 4.68e-24 | 15 |
chordal neural plate | 4.68e-24 | 15 |
segmental subdivision of hindbrain | 2.46e-17 | 12 |
hindbrain | 2.46e-17 | 12 |
presumptive hindbrain | 2.46e-17 | 12 |
segmental subdivision of nervous system | 4.65e-16 | 13 |
brainstem | 6.71e-16 | 6 |
locus ceruleus | 1.48e-12 | 2 |
brainstem nucleus | 1.48e-12 | 2 |
hindbrain nucleus | 1.48e-12 | 2 |
Ammon's horn | 2.07e-12 | 2 |
lobe parts of cerebral cortex | 2.07e-12 | 2 |
hippocampal formation | 2.07e-12 | 2 |
limbic lobe | 2.07e-12 | 2 |
regional part of metencephalon | 7.58e-11 | 9 |
metencephalon | 7.58e-11 | 9 |
future metencephalon | 7.58e-11 | 9 |
neural tube | 6.32e-10 | 56 |
neural rod | 6.32e-10 | 56 |
future spinal cord | 6.32e-10 | 56 |
neural keel | 6.32e-10 | 56 |
pons | 8.31e-09 | 3 |
medulla oblongata | 8.96e-09 | 3 |
myelencephalon | 8.96e-09 | 3 |
future myelencephalon | 8.96e-09 | 3 |
spinal cord | 9.66e-09 | 3 |
dorsal region element | 9.66e-09 | 3 |
dorsum | 9.66e-09 | 3 |
regional part of nervous system | 5.83e-07 | 53 |
regional part of brain | 5.83e-07 | 53 |
central nervous system | 7.57e-07 | 81 |
neural plate | 7.57e-07 | 82 |
presumptive neural plate | 7.57e-07 | 82 |