FFCP PHASE1:Mm9::chr4:86221600..86221622,+: Difference between revisions
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{{FFCP|EntrezGene=68441|HGNC=|MCL_coexpression_id=1|UniProt=Q80X95|association_with_transcript=23bp_to_ENSMUST00000091064,NM_178376,uc008tlw.2_5end|description=CAGE_peak_1_at_Rraga_5end|id=chr4:86221600..86221622,+|ontology_enrichment_celltype=CL:0000055!2.02e-16!50;CL:0000393!5.07e-15!39;CL:0000211!5.07e-15!39;CL:0000221!9.92e-14!44;CL:0000133!9.92e-14!44;CL:0002319!2.22e-13!43;CL:0000540!3.16e-12!33;CL:0000047!3.16e-12!33;CL:0000031!3.16e-12!33;CL:0000404!3.16e-12!33;CL:0002321!1.63e-11!70;CL:0000220!1.63e-11!70;CL:0000723!3.53e-11!91;CL:0000048!3.53e-11!91;CL:0000117!3.72e-09!23;CL:0000337!3.72e-09!23;CL:0002371!4.71e-09!118;CL:0000034!5.34e-09!97;CL:0000144!1.28e-08!121;CL:0000012!1.28e-08!121;CL:0000548!3.62e-08!115;CL:0000004!3.62e-08!115;CL:0000255!3.62e-08!115|ontology_enrichment_celltype_v019_2=CL:0000393,5.07e-15,39;CL:0000211,5.07e-15,39;CL:0000221,9.92e-14,44;CL:0000133,9.92e-14,44;CL:0002319,2.22e-13,43;CL:0000540,3.16e-12,33;CL:0000047,3.16e-12,33;CL:0000031,3.16e-12,33;CL:0000404,3.16e-12,33;CL:0002321,1.63e-11,70;CL:0000723,3.53e-11,91;CL:0000048,3.53e-11,91;CL:0000117,3.72e-09,23;CL:0000337,3.72e-09,23;CL:0000034,5.34e-09,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.64e-28!73;UBERON:0005743!5.64e-28!73;UBERON:0000073!5.72e-28!75;UBERON:0001016!5.72e-28!75;UBERON:0004121!4.01e-26!102;UBERON:0000924!4.01e-26!102;UBERON:0006601!4.01e-26!102;UBERON:0002346!1.22e-22!71;UBERON:0003075!1.22e-22!71;UBERON:0007284!1.22e-22!71;UBERON:0001049!4.05e-20!52;UBERON:0005068!4.05e-20!52;UBERON:0006241!4.05e-20!52;UBERON:0007135!4.05e-20!52;UBERON:0000033!6.85e-19!63;UBERON:0000955!7.80e-19!50;UBERON:0006238!7.80e-19!50;UBERON:0002616!9.24e-19!49;UBERON:0003056!2.52e-15!49;UBERON:0003080!4.69e-15!40;UBERON:0002780!1.63e-14!39;UBERON:0001890!1.63e-14!39;UBERON:0006240!1.63e-14!39;UBERON:0002020!7.61e-14!34;UBERON:0004111!2.31e-12!122;UBERON:0000025!1.34e-11!114;UBERON:0002791!2.42e-11!29;UBERON:0003528!2.42e-11!29;UBERON:0001893!2.42e-11!29;UBERON:0000475!6.78e-11!200;UBERON:0000956!3.51e-08!21;UBERON:0001869!3.51e-08!21;UBERON:0000203!3.51e-08!21;UBERON:0007811!4.04e-08!86;UBERON:0000153!4.28e-08!94;UBERON:0002021!5.00e-08!10;UBERON:0000411!5.00e-08!10;UBERON:0001950!5.00e-08!10;UBERON:0002619!8.84e-08!17;UBERON:0000923!6.60e-07!314;UBERON:0005291!6.60e-07!314;UBERON:0006598!6.60e-07!314;UBERON:0002532!6.60e-07!314;UBERON:0000119!7.07e-07!183;UBERON:0000480!9.77e-07!308;UBERON:0000467!9.77e-07!308|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.64e-28,73;UBERON:0001016,5.72e-28,75;UBERON:0004121,6.12e-25,95;UBERON:0000924,6.12e-25,95;UBERON:0006601,6.12e-25,95;UBERON:0002346,7.33e-22,64;UBERON:0003075,7.33e-22,64;UBERON:0007284,7.33e-22,64;UBERON:0000073,1.70e-21,54;UBERON:0001049,4.05e-20,52;UBERON:0005068,4.05e-20,52;UBERON:0006241,4.05e-20,52;UBERON:0007135,4.05e-20,52;UBERON:0010371,7.42e-20,73;UBERON:0010314,6.97e-18,92;UBERON:0000955,6.46e-17,47;UBERON:0006238,6.46e-17,47;UBERON:0002616,7.67e-17,46;UBERON:0003056,2.52e-15,49;UBERON:0003080,4.69e-15,40;UBERON:0002780,1.63e-14,39;UBERON:0001890,1.63e-14,39;UBERON:0006240,1.63e-14,39;UBERON:0002020,7.61e-14,34;UBERON:0004111,2.31e-12,122;UBERON:0000025,1.34e-11,114;UBERON:0003528,2.42e-11,29;UBERON:0002791,2.42e-11,29;UBERON:0001893,2.42e-11,29;UBERON:0000956,3.51e-08,21;UBERON:0001869,3.51e-08,21;UBERON:0000203,3.51e-08,21;UBERON:0002021,5.00e-08,10;UBERON:0000411,5.00e-08,10;UBERON:0001950,5.00e-08,10;UBERON:0002619,8.84e-08,17|phase1_expression=66.3016227013847,29.6629096493457,29.5749505603198,13.6108895088074,19.5349334679075,29.3788725845807,35.7427340111154,34.4759273589009,58.1457422486384,44.2381954748568,51.0229545312005,39.4074465436962,32.8705401467915,28.4990511885932,37.6414030851699,38.4703008040669,46.1710839564577,55.3636100203707,47.1673651603741,51.7755375193597,29.4249783922701,28.1986301410514,31.0827749075333,35.5183178601363,35.099620003277,43.0673973086265,31.8763877157715,33.3980410663128,35.1543325994292,22.6827116783938,40.7984139605761,42.5470551217953,19.6820732027062,47.5445043046316,32.3513814121428,33.5793983624155,25.9295082453209,65.2909343949576,64.0694982509516,52.3523743973798,77.6465564200939,64.2062755860939,60.203283775863,76.545265329151,59.9137663507331,48.4563425706839,56.3321767930588,44.4771319016111,63.9286791757313,54.4403717407993,44.0957228119892,58.9385513896383,62.2473468474202,41.3456420946466,36.970317905671,91.3270997927612,81.6620303825457,76.8351417493389,69.5968625357016,78.8196559115329,79.8627568417786,53.876280598992,48.0219189900015,46.7947852986327,50.4321844909157,46.1812074714965,54.2276200038313,32.6585559523321,38.9872942279876,46.0370249711065,49.2160409562234,84.8383423679297,74.874435382597,41.8918533315143,34.3126786245286,39.5264078242309,104.610086949419,79.9322736413275,90.4742480879274,77.2853646098936,63.1264740856627,60.9468643551409,99.9475136424944,109.738708956178,91.2205539227556,67.1753174879962,67.768920060373,70.8317894136142,48.3890375399046,38.390352534247,35.943196599008,49.9045848649204,49.6379073606658,54.5100223554195,57.8301011528426,51.0750651290963,30.6168835887219,34.5973554833457,32.7330365799615,44.1674468137925,57.0415850095556,41.0644727725817,17.8363667794652,28.4426681261332,75.1223912308913,75.7545997770545,73.3010445271436,34.5977155548752,41.9479371508418,56.2595707055686,38.1667718885499,43.5385633986362,43.1250979868829,47.929799695734,44.9188861258392,48.7586374359141,37.5736350956248,33.2578520915797,28.307537662396,27.8238981909544,28.04687284447,33.4563924663303,63.3731988141615,46.552146724836,47.3349557398408,29.8884754594052,34.7463861067169,32.394747473644,37.6127872136272,77.1421792934837,54.4425717354165,38.0732686901979,72.6585658403716,71.3446125951622,82.6996417347049,83.5542504798952,50.2068063782059,27.8671614166608,33.6121268716787,38.5108596272247,45.1517937080582,60.2343513615699,41.5943519850357,37.9776140946002,37.6241840306843,46.889621624255,53.3162812744857,51.4819707770641,37.0776947844489,38.3885342740673,43.6358787926593,49.9766269934871,42.2631818822909,35.521720985261,32.925141825271,31.2483798905034,21.7686088067103,22.6466158260949,27.5638594413725,39.9752740993519,38.2277477769187,33.3114813702878,35.985199808952,27.9405209081313,33.4759634965611,28.6016752043002,30.0466209567573,30.7092850425656,26.6586956859838,37.1018468818755,31.0493540560627,30.2633973970438,29.8588156795829,31.0016827336459,68.7648131804696,45.586743284023,27.4247589876552,25.1228038330367,36.8988673425955,40.4091809037163,32.0879978692012,31.4626298412414,26.9077433052293,36.5233202136114,28.9462727542152,38.2101574959705,26.138861715228,25.6653848933085,30.2194335034636,24.268124033664,31.5561552817054,27.2823544358483,49.8826579506605,33.2463171694311,27.0498565615393,34.2134230780128,32.9719228184964,34.0158726468045,37.2463203661875,28.3411484120836,33.911725213737,38.6233123075236,50.3969466048153,30.8663445574774,38.1324450519614,34.6287653072675,33.471920029103,39.3118770396439,39.9762587296829,23.8787794084173,42.1551589615092,41.1842119782122,43.1304619582064,47.6340413015684,39.3167468124346,39.6548838376965,47.002122342741,55.9634484781506,38.0591571743206,42.0670934130476,34.5485750057095,29.3658998391075,29.8056615326398,29.6486075672014,34.0402406467,37.0753930929818,35.6255425679992,33.8840975162626,33.9638657240448,33.755842831442,39.717545829156,40.9356835785678,54.284862218138,41.3368319702219,60.9787698543605,50.2204878274613,82.0413514837617,80.2900053156592,75.246139927894,36.6082844446341,64.9946931997489,60.518005365979,63.1190555357101,51.1393227618461,50.1297016685387,43.0276326799025,53.8398233227609,65.4653121721339,56.5261522463529,45.9489482483184,35.2011411316506,41.4892856544705,43.6537051067584,36.6233672999029,29.2039304347918,41.7582694186568,41.4183273041709,53.3752375709192,41.9328687890697,58.4126781093462,43.6743815454294,40.7157777014806,38.8582142439346,51.1979547856022,37.9506990869996,36.0974401368654,82.3863845924167,42.4944181913892,57.435255599543,47.3684847419819,47.1725021488448,58.148234538275,52.6556865926787,53.5858310441695,34.7314127934291,26.9026729997052,42.7825092226626,19.2916915941532,32.454349765877,32.7499182359886,31.514298816828,29.7095028538561,23.9014286036478,80.1037304685402,28.7063079740393,34.0538332139317,36.2981273644635,30.3273215777553,23.9214898511794,28.3684934776088,37.0552977386605,33.4483971053543,33.3061936868661,42.9601778106801,42.5471911366627,36.3941846157059,35.317746448729,36.3813635065176,40.3970742930429,40.7290326082159,39.2603914695346,41.8809507174447,39.7917968005804,20.5041973318685,18.0381740378941,35.7344545045109,36.4008679005615,30.5288365700155,34.4856728685542,30.4121025883401,29.3393096614385,26.6918988930098,28.9411790614962,20.7762343910365,18.4339204005034,27.4929674946515,32.2333092311361,34.7163035217116,27.5432144712925,23.2734704367726,27.4180269598146,26.0824125458332,26.8794939457731,22.2126189885925,19.889976536955,21.3751512490102,20.2712391938685,22.9946301520387,23.8428880450401,41.4916602015837,25.9723565447656,22.069608725931,25.0148078382477,47.717829725951,47.1083013382467,42.4911768300055,45.2317279856829,43.1352009470412,104.479090884157,86.0808192268421,95.1006552309398,94.8629566537156,106.87287308422,98.9566005580508,105.303510036162,97.7197010996558,116.004456699956,99.4099798563494,35.3914855262042,47.8829848081237,49.1712784571906,29.4159127652636,41.0841798750845,29.9664918773523,32.6702689868374,31.5233637575508,25.6735367673452,30.8290598351833,30.4175159868288,26.7849404768228,27.7178862110852,24.009432151826,25.6736546231591,27.1487404031352,26.8851636192065,22.5703787942535,30.0822707586414,28.4093915859387,24.0008476669791,24.3141854438292,27.4201618439419,26.4530478270838,31.2443142978898,25.0459239359362,33.6587470085902,31.831435083979,31.5065544122399,22.4456908663095,29.4214844947952,25.9066788647732,21.2800142448238,24.3250840661967,30.4792445350203,32.7251857098709,37.6629889597108,39.9660160529835,32.1364397875657,35.956401316481,47.301038466566|short_description=p1@Rraga}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68441 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80X95 | |||
|association_with_transcript=23bp_to_ENSMUST00000091064,NM_178376,uc008tlw.2_5end | |||
|cluster_id=chr4:86221600..86221622,+ | |||
|description=CAGE_peak_1_at_Rraga_5end | |||
|id=chr4:86221600..86221622,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.02e-16!50;CL:0000393!5.07e-15!39;CL:0000211!5.07e-15!39;CL:0000221!9.92e-14!44;CL:0000133!9.92e-14!44;CL:0002319!2.22e-13!43;CL:0000540!3.16e-12!33;CL:0000047!3.16e-12!33;CL:0000031!3.16e-12!33;CL:0000404!3.16e-12!33;CL:0002321!1.63e-11!70;CL:0000220!1.63e-11!70;CL:0000723!3.53e-11!91;CL:0000048!3.53e-11!91;CL:0000117!3.72e-09!23;CL:0000337!3.72e-09!23;CL:0002371!4.71e-09!118;CL:0000034!5.34e-09!97;CL:0000144!1.28e-08!121;CL:0000012!1.28e-08!121;CL:0000548!3.62e-08!115;CL:0000004!3.62e-08!115;CL:0000255!3.62e-08!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,5.07e-15,39;CL:0000211,5.07e-15,39;CL:0000221,9.92e-14,44;CL:0000133,9.92e-14,44;CL:0002319,2.22e-13,43;CL:0000540,3.16e-12,33;CL:0000047,3.16e-12,33;CL:0000031,3.16e-12,33;CL:0000404,3.16e-12,33;CL:0002321,1.63e-11,70;CL:0000723,3.53e-11,91;CL:0000048,3.53e-11,91;CL:0000117,3.72e-09,23;CL:0000337,3.72e-09,23;CL:0000034,5.34e-09,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.64e-28!73;UBERON:0005743!5.64e-28!73;UBERON:0000073!5.72e-28!75;UBERON:0001016!5.72e-28!75;UBERON:0004121!4.01e-26!102;UBERON:0000924!4.01e-26!102;UBERON:0006601!4.01e-26!102;UBERON:0002346!1.22e-22!71;UBERON:0003075!1.22e-22!71;UBERON:0007284!1.22e-22!71;UBERON:0001049!4.05e-20!52;UBERON:0005068!4.05e-20!52;UBERON:0006241!4.05e-20!52;UBERON:0007135!4.05e-20!52;UBERON:0000033!6.85e-19!63;UBERON:0000955!7.80e-19!50;UBERON:0006238!7.80e-19!50;UBERON:0002616!9.24e-19!49;UBERON:0003056!2.52e-15!49;UBERON:0003080!4.69e-15!40;UBERON:0002780!1.63e-14!39;UBERON:0001890!1.63e-14!39;UBERON:0006240!1.63e-14!39;UBERON:0002020!7.61e-14!34;UBERON:0004111!2.31e-12!122;UBERON:0000025!1.34e-11!114;UBERON:0002791!2.42e-11!29;UBERON:0003528!2.42e-11!29;UBERON:0001893!2.42e-11!29;UBERON:0000475!6.78e-11!200;UBERON:0000956!3.51e-08!21;UBERON:0001869!3.51e-08!21;UBERON:0000203!3.51e-08!21;UBERON:0007811!4.04e-08!86;UBERON:0000153!4.28e-08!94;UBERON:0002021!5.00e-08!10;UBERON:0000411!5.00e-08!10;UBERON:0001950!5.00e-08!10;UBERON:0002619!8.84e-08!17;UBERON:0000923!6.60e-07!314;UBERON:0005291!6.60e-07!314;UBERON:0006598!6.60e-07!314;UBERON:0002532!6.60e-07!314;UBERON:0000119!7.07e-07!183;UBERON:0000480!9.77e-07!308;UBERON:0000467!9.77e-07!308 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.64e-28,73;UBERON:0001016,5.72e-28,75;UBERON:0004121,6.12e-25,95;UBERON:0000924,6.12e-25,95;UBERON:0006601,6.12e-25,95;UBERON:0002346,7.33e-22,64;UBERON:0003075,7.33e-22,64;UBERON:0007284,7.33e-22,64;UBERON:0000073,1.70e-21,54;UBERON:0001049,4.05e-20,52;UBERON:0005068,4.05e-20,52;UBERON:0006241,4.05e-20,52;UBERON:0007135,4.05e-20,52;UBERON:0010371,7.42e-20,73;UBERON:0010314,6.97e-18,92;UBERON:0000955,6.46e-17,47;UBERON:0006238,6.46e-17,47;UBERON:0002616,7.67e-17,46;UBERON:0003056,2.52e-15,49;UBERON:0003080,4.69e-15,40;UBERON:0002780,1.63e-14,39;UBERON:0001890,1.63e-14,39;UBERON:0006240,1.63e-14,39;UBERON:0002020,7.61e-14,34;UBERON:0004111,2.31e-12,122;UBERON:0000025,1.34e-11,114;UBERON:0003528,2.42e-11,29;UBERON:0002791,2.42e-11,29;UBERON:0001893,2.42e-11,29;UBERON:0000956,3.51e-08,21;UBERON:0001869,3.51e-08,21;UBERON:0000203,3.51e-08,21;UBERON:0002021,5.00e-08,10;UBERON:0000411,5.00e-08,10;UBERON:0001950,5.00e-08,10;UBERON:0002619,8.84e-08,17 | |||
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| |||
|short_description=p1@Rraga | |||
}} |
Revision as of 18:53, 5 August 2015
Short description: | p1@Rraga |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rraga_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 23bp_to_ENSMUST00000091064, NM_178376, uc008tlw.2_5end |
EntrezGene: | 68441 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 5.07e-15 | 39 |
electrically active cell | 5.07e-15 | 39 |
ectodermal cell | 9.92e-14 | 44 |
neurectodermal cell | 9.92e-14 | 44 |
neural cell | 2.22e-13 | 43 |
neuron | 3.16e-12 | 33 |
neuronal stem cell | 3.16e-12 | 33 |
neuroblast | 3.16e-12 | 33 |
electrically signaling cell | 3.16e-12 | 33 |
embryonic cell | 1.63e-11 | 70 |
somatic stem cell | 3.53e-11 | 91 |
multi fate stem cell | 3.53e-11 | 91 |
CNS neuron (sensu Vertebrata) | 3.72e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.72e-09 | 23 |
stem cell | 5.34e-09 | 97 |