FFCP PHASE1:Hg19::chr9:132597761..132597776,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:132597761..132597776,+
|short_description=p3@USP20
|description=CAGE_peak_3_at_USP20_5end
|association_with_transcript=4bp_to_ENST00000358355,NM_001008563,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10868 | |EntrezGene=10868 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12619 | |HGNC=12619 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y2K6 | |UniProt=Q9Y2K6 | ||
|association_with_transcript=4bp_to_ENST00000358355,NM_001008563,uc004byt.1_5end | |||
|cluster_id=chr9:132597761..132597776,+ | |||
|description=CAGE_peak_3_at_USP20_5end | |||
|id=chr9:132597761..132597776,+ | |||
|ontology_enrichment_celltype=CL:0000542!6.70e-13!53;CL:0000051!6.70e-13!53;CL:0000838!8.80e-13!52;CL:0000236!3.82e-07!14;CL:0000791!4.45e-07!18;CL:0000789!4.45e-07!18;CL:0002420!4.45e-07!18;CL:0002419!4.45e-07!18;CL:0000790!4.45e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.43e-12;18!CL:0000789;2.43e-12;18!CL:0002419;2.43e-12;18!CL:0000236;6.03e-11;13!CL:0000624;1.63e-10;6!CL:0000542;8.82e-09;53!CL:0000084;8.47e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.70e-15,52;CL:0000542,1.06e-14,53;CL:0000051,1.06e-14,53;CL:0000791,1.35e-12,18;CL:0000789,1.35e-12,18;CL:0002420,1.35e-12,18;CL:0002419,1.35e-12,18;CL:0000790,1.35e-12,18;CL:0000236,5.32e-12,14;CL:0000624,1.56e-10,6;CL:0000084,5.74e-08,25;CL:0000827,5.74e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.43e-12;18!CL:0000051;8.82e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.07e-18!115;UBERON:0001049!8.22e-13!57;UBERON:0005068!8.22e-13!57;UBERON:0006241!8.22e-13!57;UBERON:0007135!8.22e-13!57;UBERON:0000955!1.31e-12!69;UBERON:0006238!1.31e-12!69;UBERON:0002616!1.85e-12!59;UBERON:0002780!2.37e-12!41;UBERON:0001890!2.37e-12!41;UBERON:0006240!2.37e-12!41;UBERON:0003080!1.38e-11!42;UBERON:0001869!2.71e-10!32;UBERON:0001017!3.62e-10!82;UBERON:0001893!3.68e-10!34;UBERON:0002020!4.03e-10!34;UBERON:0003528!4.03e-10!34;UBERON:0005743!1.00e-09!86;UBERON:0002791!1.01e-09!33;UBERON:0000073!4.55e-09!94;UBERON:0001016!4.55e-09!94;UBERON:0000153!1.57e-08!129;UBERON:0007811!1.57e-08!129;UBERON:0001950!3.98e-08!20;UBERON:0002619!4.36e-08!22;UBERON:0003075!4.44e-08!86;UBERON:0007284!4.44e-08!86;UBERON:0000956!1.00e-07!25;UBERON:0000203!1.00e-07!25;UBERON:0000033!1.55e-07!123;UBERON:0003056!2.09e-07!61;UBERON:0002346!3.20e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.18e-12;32!UBERON:0002780;7.86e-12;41!UBERON:0001890;7.86e-12;41!UBERON:0003528;1.88e-11;34!UBERON:0002020;1.88e-11;34!UBERON:0002791;2.74e-11;32!UBERON:0001893;8.66e-11;34!UBERON:0002619;1.52e-10;22!UBERON:0001950;2.01e-10;20!UBERON:0000073;3.34e-09;53!UBERON:0002616;3.34e-09;53!UBERON:0000956;7.74e-09;25!UBERON:0000203;7.74e-09;25!UBERON:0000178;5.87e-08;15!UBERON:0000179;5.87e-08;15!UBERON:0000463;5.87e-08;15!UBERON:0000955;3.13e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.91e-17,114;UBERON:0000073,1.18e-16,53;UBERON:0002616,1.18e-16,53;UBERON:0002780,3.05e-16,41;UBERON:0001890,3.05e-16,41;UBERON:0003080,3.05e-16,41;UBERON:0006240,3.05e-16,41;UBERON:0001049,2.89e-15,56;UBERON:0005068,2.89e-15,56;UBERON:0006241,2.89e-15,56;UBERON:0007135,2.89e-15,56;UBERON:0001869,3.15e-13,32;UBERON:0000955,1.18e-12,68;UBERON:0006238,1.18e-12,68;UBERON:0003528,3.27e-12,34;UBERON:0002020,3.27e-12,34;UBERON:0001893,4.12e-12,34;UBERON:0002791,7.77e-12,32;UBERON:0001017,8.91e-11,81;UBERON:0002619,2.39e-10,22;UBERON:0003056,3.08e-10,61;UBERON:0001950,3.73e-10,20;UBERON:0003075,7.99e-10,82;UBERON:0007284,7.99e-10,82;UBERON:0001016,1.36e-09,89;UBERON:0002346,5.99e-09,86;UBERON:0000956,1.13e-08,25;UBERON:0000203,1.13e-08,25;UBERON:0000178,3.53e-08,15;UBERON:0000179,3.53e-08,15;UBERON:0000463,3.53e-08,15;UBERON:0010371,4.82e-08,104 | |||
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|phase1_expression=0.363356758541113,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0.245733936501509,0.697801167972428,0.436882744260345,0.527533956456907,0,0.331397375727916,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0.572471974262113,0.410623275218653,0.125542639594803,0.382067028739756,0.492603536699674,0.157421562627358,1.96682138424452,0.383829398097213,0.619264493264304,0,0,1.84877005083394,0.774672005803016,0.995184627411951,0,0.553995408531877,0.802177789880567,1.51907609501096,0,1.29557466407592,0.257575567634187,0.436194716338694,0,0,0.232429036905685,0,0.309706370895104,0.863077176966451,0,0,0,0,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0.199463657621632,0,0,0,0,0,0.521482918420201,0.217188844705117,0,0,0.632924774881769,0.422510572623884,0.425208599930087,0,0.786300418025466,0.450530678524519,0.16072558669708,0.285012743741249,0.79566670879636,0.182664153764634,1.75996244461323,2.73069305631066,1.77901850772711,2.13365111283254,0.400395987036012,4.02326707968138,2.64417949113945,1.90810750907073,3.41527781465669,2.93618594685469,1.52909291250092,1.32171328579026,1.68152568894461,0,6.88484195398416,5.50215067848831,5.96244347098577,3.8452893939856,8.79990119910694,2.36723902867367,3.89653456815823,2.78526142212934,4.41908861212256,2.87994062958707,4.06205795647523,3.45846563259323,2.9913649938772,2.95988228286617,4.14525026678773,1.73881851441031,4.44859689486181,3.74557159325598,5.22677619024884,2.26618685395132,7.2811893784365,4.81078423675682,3.54227568827304,1.91139248594458,3.90650072313851,0.950452044448374,1.35517607169996,1.53583933385302,0,0.236777252044017,0,8.26587647221403,5.34880391567015,5.35850294366356,0,0,0,0,0,0.434539556882471,0.795285947051099,0,0.850813354476611,0.443458794925128,0.87834785693126,1.96468613246569,1.09288586487763,0,0,0.696518949197069,0.26591592103773,0.715471872916026,0.571994910780128,0.371457501329565,0,0,0,0,0.419499436209906,0,0.208994966536811,0.258416759169329,0,0,0,0,0.976248230192678,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,3.87780264148325,0,0,0.25326102332916,0.529636723252875,0,0,0.560677600142307,3.20246987189115,0,0,0.134710672069688,0,0.302714855289863,0,0.234321431833797,0.312160076830321,0,0,0.117434498643765,0.161872944368132,0,0.408308342509787,0,0.309977343527296,0,0,0.910161361938026,0,0,0,0.277064115484183,0,0,0.300476117813194,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0,0.257640540045629,0,0.168776332241266,0.0974370051611986,0,0.184099797284599,0.323292113637624,0,0.10075209822764,0,0.193260853163297,1.09098448236334,0,0.243947412259191,0.530119073285941,0.116193942869518,0.621966330092223,0,0.36497735907583,0,0,1.38134921352481,0.464367928031979,0,0.236613600079688,0.168584690078102,0.482022059766964,0.220587945464788,0.217879444092406,0,0,0.588664395376038,0,0,0,0,0,1.26755034821831,0,0.590789906681404,1.7658523976586,0.368965315629341,0,0.109750285408626,0,0.301586917234893,0.185176890317059,0,0,0,0.34779121492523,0.352226082707465,0,0,0.951270761172991,0,2.57545848628462,0.492434012174795,0.234004265139238,0.148631162288728,0,0.335964256397719,0.708875486211932,0.358234090811393,0,0.383382679165211,0,0.088048434013226,1.86595303986695,1.00883967391873,0.12624243342638,0,0.381988425558278,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.112131084345361,0,0,0,0,0,0.531876233169741,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0.355391948742546,0,0.904318131178758,0,0.299918973546171,0,0,0,0,0,0,0.579125226670317,0.205476322550383,0.537182889719687,0.336255431980582,6.5020150866636,5.39068937148793,6.41715181398742,0,0,0,0,0,0.749007023947182,0,1.24324654030811,0,0,0,0.415941723061614,0,0.157702415033935,0.234282829985426,0.300946099727719,2.27407504055985,1.03473071292505,0,0.368738337083406,0,0.195801157462741,0.686286847621712,2.89475236572042,1.72571360654893,1.921096040462,1.5156378572313,0,0,0,0.153461973288062,0,0.384417447767103,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0.483437798366489,0.200506470303285,0.184161977871793,0.229628896329213,0,0.393373244878272,0,0.0770153371044148,0.784349769176855,0,0.211103257785751,1.13733384070897,0.340187410553031,0,0,0,0.501689773854853,0.509752546090077,0.831076008928724,0,0.438519753291869,0.261435451024901,0,0.656029291399411,0,0.618246069886334,0.366277859273374,0.247528499761764,1.14853107599234,0,0,0.386682873168488,0,0,0.137836572484531,0.214840489736547,0.145016693914229,0.170453254832202,0.178064071293475,0,0.768760269460425,1.14851441245126,0.4046311234222,0.464845549297286,0.31481234683064,0,0,0,0,0.18532421910392,0.286249773483982,0,0.632758849437452,0.190630193923825,0,0,0,0,0.539617372749944,0.274537029736055,0.117812402345686,0,0,0,0.975267478179181,0,0,0.409499734223957,0.141405431953713,1.13008116620243,0,0,0.438450885253763,0,0.655894752046633,0,0.30982349809975,0,0.143411352204052,0.196498082026242,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0.22972340020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| ||
|short_description=p3@USP20 | |||
}} | }} |
Latest revision as of 23:37, 15 September 2015
Short description: | p3@USP20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_USP20_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000358355, NM_001008563, uc004byt.1_5end |
EntrezGene: | USP20 |
HGNC: | 12619 |
UniProt: | Q9Y2K6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.70e-15 | 52 |
lymphocyte | 1.06e-14 | 53 |
common lymphoid progenitor | 1.06e-14 | 53 |
mature alpha-beta T cell | 1.35e-12 | 18 |
alpha-beta T cell | 1.35e-12 | 18 |
immature T cell | 1.35e-12 | 18 |
mature T cell | 1.35e-12 | 18 |
immature alpha-beta T cell | 1.35e-12 | 18 |
B cell | 5.32e-12 | 14 |
CD4-positive, alpha-beta T cell | 1.56e-10 | 6 |
T cell | 5.74e-08 | 25 |
pro-T cell | 5.74e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.91e-17 | 114 |
regional part of nervous system | 1.18e-16 | 53 |
regional part of brain | 1.18e-16 | 53 |
regional part of forebrain | 3.05e-16 | 41 |
forebrain | 3.05e-16 | 41 |
anterior neural tube | 3.05e-16 | 41 |
future forebrain | 3.05e-16 | 41 |
neural tube | 2.89e-15 | 56 |
neural rod | 2.89e-15 | 56 |
future spinal cord | 2.89e-15 | 56 |
neural keel | 2.89e-15 | 56 |
cerebral hemisphere | 3.15e-13 | 32 |
brain | 1.18e-12 | 68 |
future brain | 1.18e-12 | 68 |
brain grey matter | 3.27e-12 | 34 |
gray matter | 3.27e-12 | 34 |
telencephalon | 4.12e-12 | 34 |
regional part of telencephalon | 7.77e-12 | 32 |
central nervous system | 8.91e-11 | 81 |
regional part of cerebral cortex | 2.39e-10 | 22 |
pre-chordal neural plate | 3.08e-10 | 61 |
neocortex | 3.73e-10 | 20 |
neural plate | 7.99e-10 | 82 |
presumptive neural plate | 7.99e-10 | 82 |
nervous system | 1.36e-09 | 89 |
neurectoderm | 5.99e-09 | 86 |
cerebral cortex | 1.13e-08 | 25 |
pallium | 1.13e-08 | 25 |
blood | 3.53e-08 | 15 |
haemolymphatic fluid | 3.53e-08 | 15 |
organism substance | 3.53e-08 | 15 |
ecto-epithelium | 4.82e-08 | 104 |