FFCP PHASE1:Hg19::chr6:152702306..152702529,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:152702306..152702529,-
|short_description=p1@SYNE1
|description=CAGE_peak_1_at_SYNE1_5end
|association_with_transcript=0bp_to_ENST00000471834,uc003qov.2,uc...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt=Q3ZCV0 | |UniProt=Q3ZCV0 | ||
|association_with_transcript=0bp_to_ENST00000471834,uc003qov.2,uc010kja.1_5end | |||
|cluster_id=chr6:152702306..152702529,- | |||
|description=CAGE_peak_1_at_SYNE1_5end | |||
|id=chr6:152702306..152702529,- | |||
|ontology_enrichment_celltype=CL:0000055!7.76e-16!180;CL:0000057!1.63e-09!75;CL:0002620!1.61e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.25e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.59e-10,76;CL:0002620,1.24e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.05e-20!365;UBERON:0000481!1.22e-15!347;UBERON:0000468!4.47e-15!659;UBERON:0007023!4.33e-14!115;UBERON:0000483!4.84e-11!309;UBERON:0000467!5.00e-11!625;UBERON:0000073!6.04e-11!94;UBERON:0001016!6.04e-11!94;UBERON:0000119!6.42e-11!312;UBERON:0000477!7.17e-11!286;UBERON:0005743!8.61e-11!86;UBERON:0000480!9.07e-11!626;UBERON:0001017!1.26e-10!82;UBERON:0000924!1.30e-10!173;UBERON:0006601!1.30e-10!173;UBERON:0002346!1.45e-10!90;UBERON:0001049!1.49e-10!57;UBERON:0005068!1.49e-10!57;UBERON:0006241!1.49e-10!57;UBERON:0007135!1.49e-10!57;UBERON:0004121!8.29e-10!169;UBERON:0002616!9.68e-10!59;UBERON:0003075!1.20e-09!86;UBERON:0007284!1.20e-09!86;UBERON:0000062!1.38e-09!511;UBERON:0000955!2.00e-09!69;UBERON:0006238!2.00e-09!69;UBERON:0004111!3.31e-09!241;UBERON:0000025!5.51e-09!194;UBERON:0002050!3.41e-08!605;UBERON:0005423!3.41e-08!605;UBERON:0000033!4.70e-08!123;UBERON:0000922!5.29e-08!612;UBERON:0003080!5.56e-08!42;UBERON:0000923!6.19e-08!604;UBERON:0005291!6.19e-08!604;UBERON:0006598!6.19e-08!604;UBERON:0002532!6.19e-08!604;UBERON:0002780!9.22e-08!41;UBERON:0001890!9.22e-08!41;UBERON:0006240!9.22e-08!41;UBERON:0000153!1.17e-07!129;UBERON:0007811!1.17e-07!129;UBERON:0002100!3.53e-07!216;UBERON:0002020!8.72e-07!34;UBERON:0003528!8.72e-07!34 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.49e-14,114;UBERON:0010314,1.66e-13,132;UBERON:0004121,4.90e-11,171;UBERON:0000924,4.90e-11,171;UBERON:0006601,4.90e-11,171;UBERON:0002346,6.25e-11,86;UBERON:0000483,1.47e-10,306;UBERON:0001049,1.72e-10,56;UBERON:0005068,1.72e-10,56;UBERON:0006241,1.72e-10,56;UBERON:0007135,1.72e-10,56;UBERON:0000119,1.94e-10,309;UBERON:0001016,3.28e-10,89;UBERON:0001017,3.74e-10,81;UBERON:0003075,5.54e-10,82;UBERON:0007284,5.54e-10,82;UBERON:0000073,2.12e-09,53;UBERON:0002616,2.12e-09,53;UBERON:0000955,4.03e-09,68;UBERON:0006238,4.03e-09,68;UBERON:0004111,7.02e-09,240;UBERON:0011216,7.14e-09,223;UBERON:0000025,2.41e-08,192;UBERON:0010371,2.54e-08,104;UBERON:0002780,7.04e-08,41;UBERON:0001890,7.04e-08,41;UBERON:0003080,7.04e-08,41;UBERON:0006240,7.04e-08,41;UBERON:0003528,6.94e-07,34;UBERON:0002020,6.94e-07,34 | |||
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|phase1_expression=36.1539974748408,26.7625654863729,68.22193158245,28.0205235388765,20.113249249228,31.4041868676133,7.59899634504932,10.1075179748293,4.17897005119742,2.21160542851358,1.39560233594486,4.15038607047327,1.58260186937072,16.9559903555264,15.90707403494,13.4465029290355,16.2727522566474,18.9880623500717,17.5655807564582,4.30923703268758,3.26401105990805,5.01527554364941,30.054778648761,14.6455634827986,34.2731406093812,0.0764134057479513,0.0821005894499457,0,0,0,0.309632246632152,1.83884244895785,0.30120591877825,2.9580320813343,0,0,0,1.10799081706375,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,3.63239701580021,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0.651083453856419,0,0.150575119077773,0,0,0.236777252044017,0,0.604820229674197,0.802320587350522,0.289648807765598,17.0664806419773,3.35350429851818,3.58015173161885,40.4811850670714,45.621749867866,29.6935363869689,61.2370179229346,49.1501219005662,19.0960330671417,10.8647404756656,12.560374354117,17.3547275034469,0.728590576585084,0.741568885568859,0,0,0,0,0,0.371457501329565,3.37896092523399,0.860234595106124,1.38856200643038,3.39184765154406,4.61449379830897,1.37559020970034,1.25396979922086,2.84258435086262,3.91342888955381,3.68192674041137,0.805658634218294,4.56163263431108,1.22031028774085,4.41195696415042,2.43042584364528,8.3941744587035,6.73588117878509,3.94140181691628,1.53316637465883,1.89853131913626,1.83201743930407,0,0,0.872188104285069,61.6245220102195,33.6837161027782,103.146751853497,108.424242643052,17.3787507277195,12.8955848032731,13.8773694448616,11.1000396787722,11.2035972743916,11.5851177979932,5.23078089963068,3.93529311876822,10.37116664064,9.13853584151807,7.49184184392769,6.27519003698894,7.92078006924546,12.9177948508141,13.597327326923,8.42704840213491,20.4154171254893,8.47556789451199,19.9418757669227,36.8280885757437,22.0067567057916,3.64064544775211,2.15585442544872,15.8235947116822,13.6379186660441,17.7321033909877,25.0217243902078,21.7606335017304,21.6342804825499,6.23877007380116,94.1795587366525,47.1961829289034,31.3659213716152,67.8205877150749,47.3011109204435,114.907680860351,32.5704498580282,95.8649567130392,47.5492585186649,96.93456930974,40.8701549971809,25.5400769773723,85.5573117965041,24.5835119675442,17.2951804156697,2.31913023795956,0.818238361772504,1.72082757233402,0.121973706129595,0.132529768321485,0.929551542956147,1.34759371519982,0.252320850875628,0,45.3703643756466,22.513432836751,6.90674606762403,30.1839153220786,13.7157101517221,8.16316920274923,7.92348043367078,8.43538604592187,8.27204795492955,7.62578054323422,9.25355414533277,6.60673409984806,7.2601942096378,5.38646019724947,0,1.40241773803446,1.6462960453256,1.47008711385542,2.53510069643662,19.6565443335525,5.31710916013264,0,3.81264159483652,7.89211927373218,3.07300799144152,1.1240175325762,2.51322431029077,1.75918045801206,8.14520763275812,4.15973914111831,2.88662684050547,4.86907700895323,23.012104070221,3.89789408954899,2.77791307545966,3.04406643575357,0,0,0,0,0,0,6.04735661515894,0.850650583454319,9.31408636109622,3.77824120068151,0,3.4486426652716,0.264145302039678,17.4155617054249,11.6737162267739,9.97315224068402,11.3661230782983,12.6056180434232,3.51652341630141,3.4214489204541,5.55268460597947,5.70651809903443,10.2897515747008,3.92458795208763,4.79556075716608,6.6004457238855,78.8557466122444,0,7.607724773004,26.0619354253173,5.2003718455683,3.60090323966999,1.41849132023278,2.66422179016099,14.0118433784985,4.88359444852299,4.11620168390384,5.86325131728723,11.727934308504,3.16780749173372,16.8806051153368,16.5591357134056,23.1937339542372,0,0,0,63.740211560761,22.9723871668228,31.380119108958,28.0875734935104,12.5340556755734,25.6057177433051,0,0.394061520403854,0,0.513372145118994,31.7618280278079,35.1377605415579,21.6520867577755,7.37071567471135,15.3105300396759,0.749007023947182,0,0,18.403723757871,3.50119364741774,13.291986161287,47.2093855674932,36.2210847258238,41.4757351539248,36.5481214777265,23.1728496790344,31.8370505678379,13.4514992680256,21.9194447516694,18.621286022712,34.4059113293608,1.95801157462741,0.686286847621712,0,0.215714200818617,0.213455115606889,2.12189300012382,4.99306318531491,5.14063498660456,58.3053348374126,192.594776476518,33.1178911431027,66.1198010159417,45.5419451669366,52.1166704505288,22.2627099667486,9.40679132196199,9.76589489222199,14.618633770458,15.5776328755086,8.01851611373719,1.93375119346596,3.80962293576241,5.80110230296147,16.4184660875388,15.2956581125642,13.1124414959424,2.25599806453706,5.85316561993552,0.784349769176855,1.46139224653261,9.18299171368019,0,0.170093705276516,5.82972973475776,0,1.62567862526312,1.50506932156456,2.29388645740534,2.49322802678617,1.34324852833307,0,0,6.92415337814251,2.95213181129735,23.1018660211655,25.0389658303965,7.96654343919588,13.2015199872941,2.87132768998086,1.30012049207304,36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| ||
|short_description=p1@SYNE1 | |||
}} | }} |
Latest revision as of 06:41, 16 September 2015
Short description: | p1@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000471834, uc003qov.2, uc010kja.1_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | Q3ZCV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.59e-10 | 76 |
skin fibroblast | 1.24e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.49e-14 | 114 |
structure with developmental contribution from neural crest | 1.66e-13 | 132 |
ectoderm-derived structure | 4.90e-11 | 171 |
ectoderm | 4.90e-11 | 171 |
presumptive ectoderm | 4.90e-11 | 171 |
neurectoderm | 6.25e-11 | 86 |
epithelium | 1.47e-10 | 306 |
neural tube | 1.72e-10 | 56 |
neural rod | 1.72e-10 | 56 |
future spinal cord | 1.72e-10 | 56 |
neural keel | 1.72e-10 | 56 |
cell layer | 1.94e-10 | 309 |
nervous system | 3.28e-10 | 89 |
central nervous system | 3.74e-10 | 81 |
neural plate | 5.54e-10 | 82 |
presumptive neural plate | 5.54e-10 | 82 |
regional part of nervous system | 2.12e-09 | 53 |
regional part of brain | 2.12e-09 | 53 |
brain | 4.03e-09 | 68 |
future brain | 4.03e-09 | 68 |
anatomical conduit | 7.02e-09 | 240 |
organ system subdivision | 7.14e-09 | 223 |
tube | 2.41e-08 | 192 |
ecto-epithelium | 2.54e-08 | 104 |
regional part of forebrain | 7.04e-08 | 41 |
forebrain | 7.04e-08 | 41 |
anterior neural tube | 7.04e-08 | 41 |
future forebrain | 7.04e-08 | 41 |
brain grey matter | 6.94e-07 | 34 |
gray matter | 6.94e-07 | 34 |