FFCP PHASE1:Hg19::chr1:145611113..145611182,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:145611113..145611182,+ to FFCP PHASE1:Hg19::chr1:145611113..145611182,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27246 | |EntrezGene=27246 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18154 | |HGNC=18154 | ||
|TSSclassifier=strong | |||
|UniProt=F5H4I2 | |UniProt=F5H4I2 | ||
|association_with_transcript=63bp_to_ENST00000539368_5end | |||
|cluster_id=chr1:145611113..145611182,+ | |||
|description=CAGE_peak_1_at_RNF115_5end | |||
|id=chr1:145611113..145611182,+ | |||
|ontology_enrichment_celltype=CL:0000057!1.60e-16!75;CL:0002620!5.51e-10!23;CL:0000055!9.82e-09!180 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.23e-10;23!CL:0000057;3.53e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.45e-16,76;CL:0002620,5.51e-10,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.64e-14!115;UBERON:0000955!5.20e-14!69;UBERON:0006238!5.20e-14!69;UBERON:0001049!5.86e-14!57;UBERON:0005068!5.86e-14!57;UBERON:0006241!5.86e-14!57;UBERON:0007135!5.86e-14!57;UBERON:0002616!9.30e-14!59;UBERON:0000475!2.10e-13!365;UBERON:0001017!2.54e-11!82;UBERON:0000477!6.51e-11!286;UBERON:0003080!3.24e-10!42;UBERON:0000033!4.06e-10!123;UBERON:0000153!7.21e-10!129;UBERON:0007811!7.21e-10!129;UBERON:0000073!8.12e-10!94;UBERON:0001016!8.12e-10!94;UBERON:0002780!9.23e-10!41;UBERON:0001890!9.23e-10!41;UBERON:0006240!9.23e-10!41;UBERON:0005743!1.32e-09!86;UBERON:0002346!4.78e-09!90;UBERON:0002020!6.94e-09!34;UBERON:0003528!6.94e-09!34;UBERON:0003075!9.43e-09!86;UBERON:0007284!9.43e-09!86;UBERON:0004111!9.58e-09!241;UBERON:0001869!1.32e-08!32;UBERON:0001893!2.34e-08!34;UBERON:0002791!4.67e-08!33;UBERON:0002619!3.04e-07!22;UBERON:0000119!5.63e-07!312;UBERON:0000025!7.44e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;9.46e-08;32!UBERON:0003528;9.72e-08;34!UBERON:0002020;9.72e-08;34!UBERON:0002791;1.44e-07;32!UBERON:0000073;1.71e-07;53!UBERON:0002616;1.71e-07;53!UBERON:0001893;2.61e-07;34!UBERON:0002619;2.96e-07;22!UBERON:0002780;4.73e-07;41!UBERON:0001890;4.73e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.83e-14,114;UBERON:0000955,1.47e-13,68;UBERON:0006238,1.47e-13,68;UBERON:0001049,1.73e-13,56;UBERON:0005068,1.73e-13,56;UBERON:0006241,1.73e-13,56;UBERON:0007135,1.73e-13,56;UBERON:0000073,8.70e-13,53;UBERON:0002616,8.70e-13,53;UBERON:0001016,4.56e-11,89;UBERON:0001017,6.33e-11,81;UBERON:0010314,6.81e-10,132;UBERON:0002780,9.23e-10,41;UBERON:0001890,9.23e-10,41;UBERON:0003080,9.23e-10,41;UBERON:0006240,9.23e-10,41;UBERON:0002346,1.13e-09,86;UBERON:0003075,2.21e-09,82;UBERON:0007284,2.21e-09,82;UBERON:0003528,6.94e-09,34;UBERON:0002020,6.94e-09,34;UBERON:0004111,1.19e-08,240;UBERON:0001869,1.32e-08,32;UBERON:0002791,2.16e-08,32;UBERON:0001893,2.34e-08,34;UBERON:0011216,1.36e-07,223;UBERON:0000119,1.96e-07,309;UBERON:0002619,3.04e-07,22;UBERON:0000483,3.59e-07,306;UBERON:0004121,4.03e-07,171;UBERON:0000924,4.03e-07,171;UBERON:0006601,4.03e-07,171;UBERON:0010371,9.36e-07,104 | |||
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|phase1_expression=44.6928813005569,44.9611100171065,35.9433730444726,51.0373821600965,36.2038486486103,39.2552335845166,12.6649939084155,21.4784756965123,18.2829939739887,10.3208253330634,13.9560233594486,7.42700665242586,10.2869121509097,27.2285976512103,25.5175979310495,29.5823064438781,17.4781413126953,16.0668219885222,16.1017823600867,20.6843377569004,29.3760995391724,15.6727360739044,18.8915751506497,18.888670660058,15.5672873097555,11.4620108621927,12.6434907752916,15.1911807935401,17.3080281813518,32.2416694401659,13.3141866051825,18.3884244895785,19.277178801808,17.7481924880058,23.4725617758314,22.6049079655,11.7440175733939,11.0799081706375,15.6424669026711,14.5397283379621,14.5545058255951,20.0814072931767,11.8484761111726,14.1036291616178,10.9584023669755,10.9162827534517,12.3187389560013,11.5127008646111,7.74265927237759,44.5923208099333,37.3994631532487,41.3843902305024,14.1345729102014,14.846147722428,4.06279459783025,10.9180556934711,12.2807767526031,12.1350681600346,9.48860066349798,9.62787081228281,5.75403413219137,56.7344236321152,51.2621600087594,47.3109473091291,6.09439401120026,14.7520158419696,13.7020894779026,43.9685164199301,30.7674921867919,27.3657944328447,9.6863920421339,7.73383035573886,12.0255707227536,6.76016916198214,7.86635909870661,6.0801007197429,9.2109477540126,9.16079046333189,10.125711961916,5.70025487482497,6.36533367037088,8.03722276564389,10.5597746676794,11.4689108365048,7.11607403090844,10.2415253415962,7.60752375368424,12.6445536789986,8.59358334620321,8.58648379081828,5.69212969109448,9.98303221930596,9.93910393125595,30.3994055731759,17.3757654524276,10.7987474757782,11.4091666666023,14.5413982217191,10.896879446974,14.043665612817,5.21475626613745,7.101717086021,15.5861382726329,9.46988883523975,10.0166008541445,9.08288967792847,13.2693893244858,14.2181364895499,13.7862908413471,11.3462154176537,15.1992509782217,9.85330491499179,10.5283459845063,16.0524496853828,10.4535523804977,13.1438837529177,11.1133943144557,9.96519591899627,11.8919255249166,13.061181987288,9.76625180784628,10.4549724889321,16.7138382176328,13.1826209489051,19.9889162483753,12.7859716103769,13.1380479507367,32.8618991456314,37.976507801258,26.3580415066694,19.5045493051169,9.38981203585091,10.8683177567001,26.0236189716888,16.0428131403485,14.4846518960824,15.1104329939709,9.24606253575008,14.3692922089383,12.8603050528287,12.4725395684239,14.6696564557438,9.83597278389864,10.0111799551796,8.43823223502177,12.363211348248,9.44001519683943,14.5479280826259,16.0158575018436,20.4301625731261,23.2552016619045,32.6889146140327,30.5483641414683,41.8327877023767,24.3309673001745,17.8826727261044,20.6905016871442,28.1674267494568,27.3940022268767,21.7568398297036,23.7669297094397,19.0068026429628,19.2809025463054,24.2657633028273,16.2028389576352,17.5027467436796,22.0038785173646,24.7745257063309,18.397996495906,14.2389848935219,15.9385517219454,13.1780417436063,0,20.4964204506991,33.7940927152817,16.7152275397245,23.7012433655662,17.4970338656776,26.6001286648768,19.0630384048384,8.5399196583764,8.38669664618344,19.917506265585,16.0305699762929,20.7596616954093,35.1149232136241,21.31850920576,26.2440003653852,30.2795274525411,50.2015202959115,40.3511437489863,44.977412980562,46.78128092239,54.9162654205792,63.4919472602718,36.1132892896598,55.1759671478587,43.956105719436,35.6064378161122,38.2267772013971,24.4330168217521,44.2723979699194,41.789585637236,68.4348365245932,44.3367397089646,55.1678032438235,27.4935647799072,12.0238114149622,31.7519655169286,29.0438048793252,38.1477422087211,25.8078342632586,40.8088015784218,29.3710215652017,35.7344364156652,32.7426084548056,58.851951117364,24.9909436501673,29.3639176668935,33.6223798183129,19.8805371809304,31.7369109417067,33.4034366851661,17.2002159315334,16.6375133560409,17.2082757233402,8.41618572294208,7.81925633096763,8.24976994373581,8.70752862129112,10.3451548859008,15.6940264402607,31.2899064659632,32.8052878478371,34.5337303381201,52.0092079395817,54.1409611252189,18.929088006375,20.0615781192941,18.5578493010281,18.198505500845,19.1733910801317,18.7443789097766,19.2808770669035,22.9579114196655,15.0051391209092,12.548642728619,16.8290128564135,22.636570623227,29.4017422771084,21.5483559197112,20.6393715502301,21.2684366405305,20.3073025730739,12.6678091699407,14.0685604444791,8.12152112023829,7.86812272803337,5.2275065654048,8.88849073521884,35.5131052788254,125.832109018829,8.6598805215164,10.8974580676572,9.86233031580902,22.9542651940107,21.7603190911007,18.8351610712252,18.1747011530633,17.1697232418975,12.0646332982825,11.9342175221011,13.9713292551405,15.9347517777521,14.7824272814996,11.9091081683605,12.0904005648845,11.3347236020445,12.651628412452,28.0818045600688,13.9116525740897,14.7202962033948,32.1387496119824,15.5278193114447,17.2079293531778,15.2795370223311,17.582617081507,15.3965201420435,10.6940592411456,15.3174959500398,22.2944617451851,26.7993291585412,30.5172048183296,16.2810994522509,14.9955190279022,25.0359512096318,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4972 | ||
|short_description=p1@RNF115 | |||
}} | }} |
Latest revision as of 18:49, 16 September 2015
Short description: | p1@RNF115 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF115_5end |
Coexpression cluster: | NA |
Association with transcript: | 63bp_to_ENST00000539368_5end |
EntrezGene: | RNF115 |
HGNC: | 18154 |
UniProt: | F5H4I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.45e-16 | 76 |
skin fibroblast | 5.51e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.83e-14 | 114 |
brain | 1.47e-13 | 68 |
future brain | 1.47e-13 | 68 |
neural tube | 1.73e-13 | 56 |
neural rod | 1.73e-13 | 56 |
future spinal cord | 1.73e-13 | 56 |
neural keel | 1.73e-13 | 56 |
regional part of nervous system | 8.70e-13 | 53 |
regional part of brain | 8.70e-13 | 53 |
nervous system | 4.56e-11 | 89 |
central nervous system | 6.33e-11 | 81 |
structure with developmental contribution from neural crest | 6.81e-10 | 132 |
regional part of forebrain | 9.23e-10 | 41 |
forebrain | 9.23e-10 | 41 |
anterior neural tube | 9.23e-10 | 41 |
future forebrain | 9.23e-10 | 41 |
neurectoderm | 1.13e-09 | 86 |
neural plate | 2.21e-09 | 82 |
presumptive neural plate | 2.21e-09 | 82 |
brain grey matter | 6.94e-09 | 34 |
gray matter | 6.94e-09 | 34 |
anatomical conduit | 1.19e-08 | 240 |
cerebral hemisphere | 1.32e-08 | 32 |
regional part of telencephalon | 2.16e-08 | 32 |
telencephalon | 2.34e-08 | 34 |
organ system subdivision | 1.36e-07 | 223 |
cell layer | 1.96e-07 | 309 |
regional part of cerebral cortex | 3.04e-07 | 22 |
epithelium | 3.59e-07 | 306 |
ectoderm-derived structure | 4.03e-07 | 171 |
ectoderm | 4.03e-07 | 171 |
presumptive ectoderm | 4.03e-07 | 171 |
ecto-epithelium | 9.36e-07 | 104 |