FFCP PHASE1:Hg19::chr1:243419306..243419422,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:243419306..243419422,+
|short_description=p1@SDCCAG8
|description=CAGE_peak_1_at_SDCCAG8_5end
|association_with_transcript=0bp_to_ENST00000343783,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10806 | |EntrezGene=10806 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10671 | |HGNC=10671 | ||
|TSSclassifier=strong | |||
|UniProt=A6NCS9,E9PFS7,Q86SQ7 | |UniProt=A6NCS9,E9PFS7,Q86SQ7 | ||
|association_with_transcript=0bp_to_ENST00000343783,ENST00000355875,ENST00000366541,ENST00000391846,ENST00000490065,NM_006642,uc001hzw.2,uc010pyk.1,uc010pyl.1_5end | |||
|cluster_id=chr1:243419306..243419422,+ | |||
|description=CAGE_peak_1_at_SDCCAG8_5end | |||
|id=chr1:243419306..243419422,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.65e-16!71;CL:0002009!9.78e-15!65;CL:0002194!1.05e-14!63;CL:0000576!1.05e-14!63;CL:0000040!1.05e-14!63;CL:0000559!1.05e-14!63;CL:0000839!1.74e-14!70;CL:0000766!6.30e-13!76;CL:0002057!2.73e-12!42;CL:0000860!7.02e-10!45;CL:0000763!2.86e-07!112;CL:0000049!2.86e-07!112;CL:0002031!5.03e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.89e-11;39!CL:0000234;2.89e-11;39!CL:0000860;3.69e-11;33!CL:0002057;3.69e-11;33!CL:0000576;6.00e-10;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,2.98e-19,67;CL:0002194,1.87e-17,59;CL:0000576,1.87e-17,59;CL:0000040,1.87e-17,59;CL:0000559,1.87e-17,59;CL:0002009,1.98e-17,61;CL:0000839,5.17e-17,66;CL:0000766,3.90e-15,72;CL:0000473,1.06e-14,48;CL:0000234,1.06e-14,48;CL:0000860,2.73e-12,42;CL:0002057,2.73e-12,42;CL:0000763,1.95e-08,108;CL:0000049,1.95e-08,108;CL:0002031,4.24e-08,120;CL:0002087,9.21e-08,115;CL:0000738,2.03e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;4.64e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.38e-18!115;UBERON:0001049!6.30e-14!57;UBERON:0005068!6.30e-14!57;UBERON:0006241!6.30e-14!57;UBERON:0007135!6.30e-14!57;UBERON:0002371!2.70e-13!80;UBERON:0003080!8.62e-13!42;UBERON:0002780!1.21e-12!41;UBERON:0001890!1.21e-12!41;UBERON:0006240!1.21e-12!41;UBERON:0002616!3.17e-11!59;UBERON:0000955!8.00e-11!69;UBERON:0006238!8.00e-11!69;UBERON:0001474!8.10e-11!86;UBERON:0002390!1.01e-10!102;UBERON:0003061!1.01e-10!102;UBERON:0002193!3.83e-09!112;UBERON:0004765!5.04e-09!101;UBERON:0001434!5.04e-09!101;UBERON:0001893!5.16e-09!34;UBERON:0002020!6.56e-09!34;UBERON:0003528!6.56e-09!34;UBERON:0001017!1.05e-08!82;UBERON:0002791!1.24e-08!33;UBERON:0000073!3.89e-08!94;UBERON:0001016!3.89e-08!94;UBERON:0001869!5.43e-08!32;UBERON:0005743!5.83e-08!86;UBERON:0003075!9.61e-08!86;UBERON:0007284!9.61e-08!86;UBERON:0002346!2.07e-07!90;UBERON:0000153!3.66e-07!129;UBERON:0007811!3.66e-07!129;UBERON:0002204!8.30e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.70e-09;41!UBERON:0001890;1.70e-09;41!UBERON:0000073;7.00e-08;53!UBERON:0002616;7.00e-08;53!UBERON:0001893;1.13e-07;34!UBERON:0003528;1.52e-07;34!UBERON:0002020;1.52e-07;34!UBERON:0002791;1.96e-07;32!UBERON:0001869;2.61e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.34e-18,114;UBERON:0002371,1.81e-15,76;UBERON:0001049,9.11e-14,56;UBERON:0005068,9.11e-14,56;UBERON:0006241,9.11e-14,56;UBERON:0007135,9.11e-14,56;UBERON:0002405,7.72e-13,93;UBERON:0000073,1.10e-12,53;UBERON:0002616,1.10e-12,53;UBERON:0002780,1.21e-12,41;UBERON:0001890,1.21e-12,41;UBERON:0003080,1.21e-12,41;UBERON:0006240,1.21e-12,41;UBERON:0001474,1.28e-12,82;UBERON:0002390,2.50e-12,98;UBERON:0003061,2.50e-12,98;UBERON:0004765,1.89e-11,90;UBERON:0000955,1.17e-10,68;UBERON:0006238,1.17e-10,68;UBERON:0002193,1.66e-10,108;UBERON:0001434,8.19e-10,100;UBERON:0001893,5.16e-09,34;UBERON:0003528,6.56e-09,34;UBERON:0002020,6.56e-09,34;UBERON:0001016,1.09e-08,89;UBERON:0001017,1.49e-08,81;UBERON:0003075,3.12e-08,82;UBERON:0007284,3.12e-08,82;UBERON:0002791,4.19e-08,32;UBERON:0001869,5.43e-08,32;UBERON:0002346,7.34e-08,86;UBERON:0002204,3.21e-07,167 | |||
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| ||
|short_description=p1@SDCCAG8 | |||
}} | }} |
Latest revision as of 19:30, 16 September 2015
Short description: | p1@SDCCAG8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SDCCAG8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000343783, ENST00000355875, ENST00000366541, ENST00000391846, ENST00000490065, NM_006642, uc001hzw.2, uc010pyk.1, uc010pyl.1_5end |
EntrezGene: | SDCCAG8 |
HGNC: | 10671 |
UniProt: | A6NCS9E9PFS7Q86SQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 2.98e-19 | 67 |
monopoietic cell | 1.87e-17 | 59 |
monocyte | 1.87e-17 | 59 |
monoblast | 1.87e-17 | 59 |
promonocyte | 1.87e-17 | 59 |
macrophage dendritic cell progenitor | 1.98e-17 | 61 |
myeloid lineage restricted progenitor cell | 5.17e-17 | 66 |
myeloid leukocyte | 3.90e-15 | 72 |
defensive cell | 1.06e-14 | 48 |
phagocyte | 1.06e-14 | 48 |
classical monocyte | 2.73e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.73e-12 | 42 |
myeloid cell | 1.95e-08 | 108 |
common myeloid progenitor | 1.95e-08 | 108 |
hematopoietic lineage restricted progenitor cell | 4.24e-08 | 120 |
nongranular leukocyte | 9.21e-08 | 115 |
leukocyte | 2.03e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.34e-18 | 114 |
bone marrow | 1.81e-15 | 76 |
neural tube | 9.11e-14 | 56 |
neural rod | 9.11e-14 | 56 |
future spinal cord | 9.11e-14 | 56 |
neural keel | 9.11e-14 | 56 |
immune system | 7.72e-13 | 93 |
regional part of nervous system | 1.10e-12 | 53 |
regional part of brain | 1.10e-12 | 53 |
regional part of forebrain | 1.21e-12 | 41 |
forebrain | 1.21e-12 | 41 |
anterior neural tube | 1.21e-12 | 41 |
future forebrain | 1.21e-12 | 41 |
bone element | 1.28e-12 | 82 |
hematopoietic system | 2.50e-12 | 98 |
blood island | 2.50e-12 | 98 |
skeletal element | 1.89e-11 | 90 |
brain | 1.17e-10 | 68 |
future brain | 1.17e-10 | 68 |
hemolymphoid system | 1.66e-10 | 108 |
skeletal system | 8.19e-10 | 100 |
telencephalon | 5.16e-09 | 34 |
brain grey matter | 6.56e-09 | 34 |
gray matter | 6.56e-09 | 34 |
nervous system | 1.09e-08 | 89 |
central nervous system | 1.49e-08 | 81 |
neural plate | 3.12e-08 | 82 |
presumptive neural plate | 3.12e-08 | 82 |
regional part of telencephalon | 4.19e-08 | 32 |
cerebral hemisphere | 5.43e-08 | 32 |
neurectoderm | 7.34e-08 | 86 |
musculoskeletal system | 3.21e-07 | 167 |