FFCP PHASE1:Hg19::chr5:179233998..179234042,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8878 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11280 | |||
|TSSclassifier=strong | |||
|UniProt=Q13501 | |||
|association_with_transcript=0bp_to_NM_001142299,uc011dgs.1_5end | |||
|cluster_id=chr5:179233998..179234042,+ | |||
|description=CAGE_peak_3_at_SQSTM1_5end | |||
|id=chr5:179233998..179234042,+ | |||
|ontology_enrichment_celltype=CL:0000220!4.33e-14!246;CL:0002321!5.58e-14!248;CL:0000055!6.50e-14!180;CL:0000222!1.19e-08!119;CL:0000183!1.72e-08!59;CL:1000497!2.70e-08!18;CL:0002518!2.70e-08!18;CL:0000133!3.87e-08!59;CL:1000449!9.28e-08!16;CL:0000075!2.13e-07!27;CL:0000221!4.59e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.19e-07;17!CL:0002518;1.19e-07;17!CL:0000075;2.92e-07;27!CL:1000449;3.08e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.00e-13,250;CL:0000222,1.22e-08,121;CL:1000497,6.95e-08,17;CL:0002518,6.95e-08,17;CL:0000133,8.23e-08,59;CL:0000075,1.46e-07,27;CL:1000449,2.49e-07,15;CL:0000221,4.57e-07,72;CL:0000187,7.40e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.41e-13!312;UBERON:0000475!1.45e-13!365;UBERON:0000483!1.86e-13!309;UBERON:0000481!2.67e-10!347;UBERON:0000073!7.72e-10!94;UBERON:0001016!7.72e-10!94;UBERON:0005743!8.60e-10!86;UBERON:0000924!1.19e-09!173;UBERON:0006601!1.19e-09!173;UBERON:0004121!1.49e-09!169;UBERON:0003075!1.95e-09!86;UBERON:0007284!1.95e-09!86;UBERON:0002346!1.96e-09!90;UBERON:0000955!2.55e-09!69;UBERON:0006238!2.55e-09!69;UBERON:0001017!3.22e-09!82;UBERON:0000033!3.99e-09!123;UBERON:0000025!1.35e-08!194;UBERON:0004111!2.90e-08!241;UBERON:0000468!3.13e-08!659;UBERON:0005256!7.42e-08!143;UBERON:0004211!9.28e-08!16;UBERON:0001285!9.28e-08!16;UBERON:0007684!9.28e-08!16;UBERON:0003220!9.28e-08!16;UBERON:0004208!9.28e-08!16;UBERON:0000922!9.30e-08!612;UBERON:0000477!9.30e-08!286;UBERON:0000923!1.09e-07!604;UBERON:0005291!1.09e-07!604;UBERON:0006598!1.09e-07!604;UBERON:0002532!1.09e-07!604;UBERON:0002050!1.28e-07!605;UBERON:0005423!1.28e-07!605;UBERON:0002616!1.42e-07!59;UBERON:0000153!1.58e-07!129;UBERON:0007811!1.58e-07!129;UBERON:0006555!2.95e-07!17;UBERON:0005103!2.95e-07!17;UBERON:0000083!2.95e-07!17;UBERON:0009201!2.95e-07!17;UBERON:0004819!2.95e-07!17;UBERON:0006553!2.95e-07!17;UBERON:0003074!2.95e-07!17;UBERON:0003060!2.95e-07!17;UBERON:0003056!3.00e-07!61;UBERON:0001049!4.04e-07!57;UBERON:0005068!4.04e-07!57;UBERON:0006241!4.04e-07!57;UBERON:0007135!4.04e-07!57;UBERON:0000467!5.73e-07!625;UBERON:0000480!6.25e-07!626;UBERON:0002100!6.99e-07!216;UBERON:0000353!8.28e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.08e-07;15!UBERON:0004819;3.08e-07;15!UBERON:0001285;3.08e-07;15!UBERON:0007684;3.08e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,8.39e-13,309;UBERON:0000483,1.11e-12,306;UBERON:0000955,2.65e-09,68;UBERON:0006238,2.65e-09,68;UBERON:0001017,3.31e-09,81;UBERON:0004121,3.74e-09,171;UBERON:0000924,3.74e-09,171;UBERON:0006601,3.74e-09,171;UBERON:0001016,3.98e-09,89;UBERON:0003075,4.26e-09,82;UBERON:0007284,4.26e-09,82;UBERON:0002346,4.60e-09,86;UBERON:0010314,5.82e-08,132;UBERON:0000025,5.97e-08,192;UBERON:0004111,6.70e-08,240;UBERON:0003104,1.44e-07,160;UBERON:0009142,1.44e-07,160;UBERON:0007503,1.71e-07,78;UBERON:0003056,2.21e-07,61;UBERON:0004211,2.49e-07,15;UBERON:0009773,2.49e-07,15;UBERON:0001231,2.49e-07,15;UBERON:0001285,2.49e-07,15;UBERON:0007684,2.49e-07,15;UBERON:0004208,2.49e-07,15;UBERON:0001049,4.14e-07,56;UBERON:0005068,4.14e-07,56;UBERON:0006241,4.14e-07,56;UBERON:0007135,4.14e-07,56;UBERON:0000073,4.88e-07,53;UBERON:0002616,4.88e-07,53;UBERON:0010371,5.51e-07,104;UBERON:0006555,7.87e-07,16;UBERON:0004819,7.87e-07,16 | |||
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| |||
|short_description=p3@SQSTM1 | |||
}} |
Latest revision as of 09:31, 17 September 2015
Short description: | p3@SQSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SQSTM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001142299, uc011dgs.1_5end |
EntrezGene: | SQSTM1 |
HGNC: | 11280 |
UniProt: | Q13501 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.00e-13 | 250 |
mesodermal cell | 1.22e-08 | 121 |
kidney cell | 6.95e-08 | 17 |
kidney epithelial cell | 6.95e-08 | 17 |
neurectodermal cell | 8.23e-08 | 59 |
columnar/cuboidal epithelial cell | 1.46e-07 | 27 |
epithelial cell of nephron | 2.49e-07 | 15 |
ectodermal cell | 4.57e-07 | 72 |
muscle cell | 7.40e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
cell layer | 8.39e-13 | 309 |
epithelium | 1.11e-12 | 306 |
brain | 2.65e-09 | 68 |
future brain | 2.65e-09 | 68 |
central nervous system | 3.31e-09 | 81 |
ectoderm-derived structure | 3.74e-09 | 171 |
ectoderm | 3.74e-09 | 171 |
presumptive ectoderm | 3.74e-09 | 171 |
nervous system | 3.98e-09 | 89 |
neural plate | 4.26e-09 | 82 |
presumptive neural plate | 4.26e-09 | 82 |
neurectoderm | 4.60e-09 | 86 |
structure with developmental contribution from neural crest | 5.82e-08 | 132 |
tube | 5.97e-08 | 192 |
anatomical conduit | 6.70e-08 | 240 |
mesenchyme | 1.44e-07 | 160 |
entire embryonic mesenchyme | 1.44e-07 | 160 |
epithelial vesicle | 1.71e-07 | 78 |
pre-chordal neural plate | 2.21e-07 | 61 |
nephron epithelium | 2.49e-07 | 15 |
renal tubule | 2.49e-07 | 15 |
nephron tubule | 2.49e-07 | 15 |
nephron | 2.49e-07 | 15 |
uriniferous tubule | 2.49e-07 | 15 |
nephrogenic mesenchyme | 2.49e-07 | 15 |
neural tube | 4.14e-07 | 56 |
neural rod | 4.14e-07 | 56 |
future spinal cord | 4.14e-07 | 56 |
neural keel | 4.14e-07 | 56 |
regional part of nervous system | 4.88e-07 | 53 |
regional part of brain | 4.88e-07 | 53 |
ecto-epithelium | 5.51e-07 | 104 |
excretory tube | 7.87e-07 | 16 |
kidney epithelium | 7.87e-07 | 16 |