FFCP PHASE1:Hg19::chr5:179498703..179498784,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:179498703..179498784,- to FFCP PHASE1:Hg19::chr5:179498703..179498784,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55819 | |EntrezGene=55819 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18280 | |HGNC=18280 | ||
|TSSclassifier=strong | |||
|UniProt=E5RI87 | |UniProt=E5RI87 | ||
|association_with_transcript=0bp_to_ENST00000522208_5end | |||
|cluster_id=chr5:179498703..179498784,- | |||
|coexpression_cluster_id=C2141 | |||
|description=CAGE_peak_1_at_RNF130_5end | |||
|id=chr5:179498703..179498784,- | |||
|ontology_enrichment_celltype=CL:0000766!7.01e-36!76;CL:0000763!4.94e-32!112;CL:0000049!4.94e-32!112;CL:0000557!5.51e-30!71;CL:0000839!3.71e-29!70;CL:0002194!1.35e-28!63;CL:0000576!1.35e-28!63;CL:0000040!1.35e-28!63;CL:0000559!1.35e-28!63;CL:0002009!2.59e-27!65;CL:0002057!5.04e-26!42;CL:0000860!1.49e-22!45;CL:0000037!2.68e-12!172;CL:0000566!2.68e-12!172;CL:0002032!6.62e-11!165;CL:0000837!6.62e-11!165;CL:0000988!2.34e-10!182;CL:0000738!1.07e-09!140;CL:0002393!8.32e-07!9;CL:0002397!8.32e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.50e-19;39!CL:0000234;3.50e-19;39!CL:0000860;8.21e-19;33!CL:0002057;8.21e-19;33!CL:0000576;1.99e-18;48!CL:0000766;7.68e-17;69!CL:0000763;2.05e-12;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.67e-40,72;CL:0000763,4.10e-35,108;CL:0000049,4.10e-35,108;CL:0000557,4.49e-34,67;CL:0000839,3.30e-33,66;CL:0002194,6.40e-33,59;CL:0000576,6.40e-33,59;CL:0000040,6.40e-33,59;CL:0000559,6.40e-33,59;CL:0002009,2.13e-31,61;CL:0000473,4.21e-30,48;CL:0000234,4.21e-30,48;CL:0000860,5.04e-26,42;CL:0002057,5.04e-26,42;CL:0000037,1.41e-13,168;CL:0002032,4.12e-12,161;CL:0000837,4.12e-12,161;CL:0000988,2.02e-11,177;CL:0000738,6.28e-11,136;CL:0002087,1.57e-07,115;CL:0002031,1.65e-07,120;CL:0002393,8.32e-07,9;CL:0002397,8.32e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;6.17e-19;42!CL:0000049;1.89e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!4.11e-26!86;UBERON:0002371!1.17e-25!80;UBERON:0007023!5.74e-25!115;UBERON:0002390!7.30e-25!102;UBERON:0003061!7.30e-25!102;UBERON:0002193!3.50e-24!112;UBERON:0004765!1.62e-20!101;UBERON:0001434!1.62e-20!101;UBERON:0002405!7.46e-19!115;UBERON:0001017!4.77e-17!82;UBERON:0005743!8.70e-17!86;UBERON:0001049!1.83e-16!57;UBERON:0005068!1.83e-16!57;UBERON:0006241!1.83e-16!57;UBERON:0007135!1.83e-16!57;UBERON:0000073!1.44e-15!94;UBERON:0001016!1.44e-15!94;UBERON:0000955!5.00e-15!69;UBERON:0006238!5.00e-15!69;UBERON:0002616!6.36e-14!59;UBERON:0003080!2.70e-12!42;UBERON:0002780!6.15e-12!41;UBERON:0001890!6.15e-12!41;UBERON:0006240!6.15e-12!41;UBERON:0003075!1.13e-10!86;UBERON:0007284!1.13e-10!86;UBERON:0001893!1.55e-10!34;UBERON:0002020!2.03e-10!34;UBERON:0003528!2.03e-10!34;UBERON:0002791!3.36e-10!33;UBERON:0002346!5.52e-10!90;UBERON:0001869!1.42e-09!32;UBERON:0000956!1.42e-07!25;UBERON:0000203!1.42e-07!25;UBERON:0003056!2.35e-07!61;UBERON:0002619!4.10e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.03e-09;53!UBERON:0002616;3.03e-09;53!UBERON:0001893;4.42e-09;34!UBERON:0002780;4.92e-09;41!UBERON:0001890;4.92e-09;41!UBERON:0003528;5.76e-09;34!UBERON:0002020;5.76e-09;34!UBERON:0002791;8.49e-09;32!UBERON:0001869;1.06e-08;32!UBERON:0000956;1.38e-07;25!UBERON:0000203;1.38e-07;25!UBERON:0002619;4.07e-07;22!UBERON:0001017;4.21e-07;75!UBERON:0000955;4.47e-07;68!UBERON:0007023;6.29e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.46e-29,82;UBERON:0002371,5.18e-29,76;UBERON:0002390,1.20e-27,98;UBERON:0003061,1.20e-27,98;UBERON:0002193,9.56e-27,108;UBERON:0004765,7.92e-26,90;UBERON:0007023,1.17e-24,114;UBERON:0002405,1.07e-23,93;UBERON:0001434,1.84e-22,100;UBERON:0001017,1.08e-16,81;UBERON:0001049,4.26e-16,56;UBERON:0005068,4.26e-16,56;UBERON:0006241,4.26e-16,56;UBERON:0007135,4.26e-16,56;UBERON:0001016,2.10e-15,89;UBERON:0000073,6.31e-15,53;UBERON:0002616,6.31e-15,53;UBERON:0000955,1.12e-14,68;UBERON:0006238,1.12e-14,68;UBERON:0002780,6.15e-12,41;UBERON:0001890,6.15e-12,41;UBERON:0003080,6.15e-12,41;UBERON:0006240,6.15e-12,41;UBERON:0003075,1.30e-10,82;UBERON:0007284,1.30e-10,82;UBERON:0001893,1.55e-10,34;UBERON:0003528,2.03e-10,34;UBERON:0002020,2.03e-10,34;UBERON:0002346,6.66e-10,86;UBERON:0002791,1.06e-09,32;UBERON:0001869,1.42e-09,32;UBERON:0000956,1.41e-07,25;UBERON:0000203,1.41e-07,25;UBERON:0003056,2.19e-07,61;UBERON:0002619,4.10e-07,22 | |||
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| ||
|short_description=p1@RNF130 | |||
}} | }} |
Latest revision as of 10:11, 17 September 2015
Short description: | p1@RNF130 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF130_5end |
Coexpression cluster: | C2141_Neutrophils_Macrophage_CD14_Monocytederived_Eosinophils_Dendritic_CD14CD16 |
Association with transcript: | 0bp_to_ENST00000522208_5end |
EntrezGene: | RNF130 |
HGNC: | 18280 |
UniProt: | E5RI87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.67e-40 | 72 |
myeloid cell | 4.10e-35 | 108 |
common myeloid progenitor | 4.10e-35 | 108 |
granulocyte monocyte progenitor cell | 4.49e-34 | 67 |
myeloid lineage restricted progenitor cell | 3.30e-33 | 66 |
monopoietic cell | 6.40e-33 | 59 |
monocyte | 6.40e-33 | 59 |
monoblast | 6.40e-33 | 59 |
promonocyte | 6.40e-33 | 59 |
macrophage dendritic cell progenitor | 2.13e-31 | 61 |
defensive cell | 4.21e-30 | 48 |
phagocyte | 4.21e-30 | 48 |
classical monocyte | 5.04e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.04e-26 | 42 |
hematopoietic stem cell | 1.41e-13 | 168 |
hematopoietic oligopotent progenitor cell | 4.12e-12 | 161 |
hematopoietic multipotent progenitor cell | 4.12e-12 | 161 |
hematopoietic cell | 2.02e-11 | 177 |
leukocyte | 6.28e-11 | 136 |
nongranular leukocyte | 1.57e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 1.65e-07 | 120 |
intermediate monocyte | 8.32e-07 | 9 |
CD14-positive, CD16-positive monocyte | 8.32e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone element | 2.46e-29 | 82 |
bone marrow | 5.18e-29 | 76 |
hematopoietic system | 1.20e-27 | 98 |
blood island | 1.20e-27 | 98 |
hemolymphoid system | 9.56e-27 | 108 |
skeletal element | 7.92e-26 | 90 |
adult organism | 1.17e-24 | 114 |
immune system | 1.07e-23 | 93 |
skeletal system | 1.84e-22 | 100 |
central nervous system | 1.08e-16 | 81 |
neural tube | 4.26e-16 | 56 |
neural rod | 4.26e-16 | 56 |
future spinal cord | 4.26e-16 | 56 |
neural keel | 4.26e-16 | 56 |
nervous system | 2.10e-15 | 89 |
regional part of nervous system | 6.31e-15 | 53 |
regional part of brain | 6.31e-15 | 53 |
brain | 1.12e-14 | 68 |
future brain | 1.12e-14 | 68 |
regional part of forebrain | 6.15e-12 | 41 |
forebrain | 6.15e-12 | 41 |
anterior neural tube | 6.15e-12 | 41 |
future forebrain | 6.15e-12 | 41 |
neural plate | 1.30e-10 | 82 |
presumptive neural plate | 1.30e-10 | 82 |
telencephalon | 1.55e-10 | 34 |
brain grey matter | 2.03e-10 | 34 |
gray matter | 2.03e-10 | 34 |
neurectoderm | 6.66e-10 | 86 |
regional part of telencephalon | 1.06e-09 | 32 |
cerebral hemisphere | 1.42e-09 | 32 |
cerebral cortex | 1.41e-07 | 25 |
pallium | 1.41e-07 | 25 |
pre-chordal neural plate | 2.19e-07 | 61 |
regional part of cerebral cortex | 4.10e-07 | 22 |