FFCP PHASE1:Hg19::chr5:31193890..31193901,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1004 | |EntrezGene=1004 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1765 | |HGNC=1765 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=14bp_to_ENST00000506396_5end | |association_with_transcript=14bp_to_ENST00000506396_5end | ||
|cluster_id=chr5:31193890..31193901,+ | |||
|coexpression_cluster_id=C1958 | |coexpression_cluster_id=C1958 | ||
|description=CAGE_peak_4_at_CDH6_5end | |description=CAGE_peak_4_at_CDH6_5end | ||
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|ontology_enrichment_celltype=CL:0000359!5.59e-13!32;CL:0000192!1.19e-08!42;CL:0000514!1.19e-08!42;CL:0000055!3.71e-07!180;CL:0002494!6.01e-07!16 | |ontology_enrichment_celltype=CL:0000359!5.59e-13!32;CL:0000192!1.19e-08!42;CL:0000514!1.19e-08!42;CL:0000055!3.71e-07!180;CL:0002494!6.01e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000359;9.82e-12;32!CL:1000306;6.04e-07;4!CL:0002547;6.04e-07;4 | |ontology_enrichment_celltype_v019=CL:0000359;9.82e-12;32!CL:1000306;6.04e-07;4!CL:0002547;6.04e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000359,9.27e-13,32;CL:0000192,6.11e-08,43;CL:0000514,6.11e-08,43;CL:1000306,5.74e-07,4;CL:0002547,5.74e-07,4 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004573;6.96e-11;33!UBERON:0004571;6.96e-11;33!UBERON:0001637;9.72e-10;42!UBERON:0003509;9.72e-10;42!UBERON:0004572;9.72e-10;42!UBERON:0001869;3.46e-09;32!UBERON:0003528;4.33e-09;34!UBERON:0002020;4.33e-09;34!UBERON:0002791;2.43e-08;32!UBERON:0001893;5.71e-08;34!UBERON:0001950;1.46e-07;20!UBERON:0000956;1.57e-07;25!UBERON:0000203;1.57e-07;25!UBERON:0002780;1.57e-07;41!UBERON:0001890;1.57e-07;41!UBERON:0001017;4.54e-07;75!UBERON:0000488;5.42e-07;4!UBERON:0004797;6.04e-07;4!UBERON:0000415;6.04e-07;4!UBERON:0007240;6.04e-07;4!UBERON:0005742;6.04e-07;4!UBERON:0005734;6.04e-07;4!UBERON:0004664;6.04e-07;4!UBERON:0004663;6.04e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0004573;6.96e-11;33!UBERON:0004571;6.96e-11;33!UBERON:0001637;9.72e-10;42!UBERON:0003509;9.72e-10;42!UBERON:0004572;9.72e-10;42!UBERON:0001869;3.46e-09;32!UBERON:0003528;4.33e-09;34!UBERON:0002020;4.33e-09;34!UBERON:0002791;2.43e-08;32!UBERON:0001893;5.71e-08;34!UBERON:0001950;1.46e-07;20!UBERON:0000956;1.57e-07;25!UBERON:0000203;1.57e-07;25!UBERON:0002780;1.57e-07;41!UBERON:0001890;1.57e-07;41!UBERON:0001017;4.54e-07;75!UBERON:0000488;5.42e-07;4!UBERON:0004797;6.04e-07;4!UBERON:0000415;6.04e-07;4!UBERON:0007240;6.04e-07;4!UBERON:0005742;6.04e-07;4!UBERON:0005734;6.04e-07;4!UBERON:0004664;6.04e-07;4!UBERON:0004663;6.04e-07;4 | ||
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| ||
|short_description=p4@CDH6 | |short_description=p4@CDH6 | ||
}} | }} |
Latest revision as of 14:41, 17 September 2015
Short description: | p4@CDH6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CDH6_5end |
Coexpression cluster: | C1958_mesodermal_Lens_Smooth_Ciliary_Fibroblast_teratocarcinoma_leiomyoma |
Association with transcript: | 14bp_to_ENST00000506396_5end |
EntrezGene: | CDH6 |
HGNC: | 1765 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 9.27e-13 | 32 |
smooth muscle cell | 6.11e-08 | 43 |
smooth muscle myoblast | 6.11e-08 | 43 |
fibroblast of tunica adventitia of artery | 5.74e-07 | 4 |
fibroblast of the aortic adventitia | 5.74e-07 | 4 |