FFCP PHASE1:Hg19::chr11:31825588..31825613,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5080 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8620 | |||
|TSSclassifier=strong | |||
|UniProt=G3V4N4,E9PS79 | |||
|association_with_transcript=0bp_to_ENST00000470027,ENST00000471303_5end | |||
|cluster_id=chr11:31825588..31825613,- | |||
|coexpression_cluster_id=C41 | |||
|description=CAGE_peak_8_at_PAX6_5end | |||
|id=chr11:31825588..31825613,- | |||
|ontology_enrichment_celltype=CL:0000064!5.30e-10!3;CL:0005012!5.30e-10!3;CL:0000067!5.30e-10!3;CL:0002304!5.30e-10!3;CL:0000075!1.98e-07!27;CL:0000306!2.13e-07!4;CL:0002222!2.13e-07!4;CL:0002224!2.13e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000064;5.56e-24;3!CL:0000067;5.56e-24;3!CL:0005012;5.56e-24;3!CL:0002304;5.56e-24;3!CL:0000075;8.61e-22;27!CL:0000306;7.42e-18;4!CL:0002222;7.42e-18;4!CL:0002224;7.42e-18;4!CL:0000047;3.49e-16;2!CL:0000710;1.61e-13;20!CL:0002322;3.11e-07;5!CL:0002077;3.54e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.62e-24,3;CL:0000067,3.62e-24,3;CL:0005012,3.62e-24,3;CL:0002304,3.62e-24,3;CL:0000075,8.30e-22,27;CL:0000306,8.34e-18,4;CL:0002222,8.34e-18,4;CL:0002224,8.34e-18,4;CL:0000710,1.49e-13,20;CL:0002077,9.14e-08,34;CL:0002322,2.88e-07,5;CL:0000133,5.00e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.97e-24;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003075!1.76e-73!86;UBERON:0007284!1.76e-73!86;UBERON:0002346!1.18e-69!90;UBERON:0001049!2.85e-61!57;UBERON:0005068!2.85e-61!57;UBERON:0006241!2.85e-61!57;UBERON:0007135!2.85e-61!57;UBERON:0003056!3.52e-61!61;UBERON:0005743!1.52e-59!86;UBERON:0002616!1.08e-55!59;UBERON:0001017!4.86e-54!82;UBERON:0000073!7.74e-53!94;UBERON:0001016!7.74e-53!94;UBERON:0002780!9.95e-50!41;UBERON:0001890!9.95e-50!41;UBERON:0006240!9.95e-50!41;UBERON:0001893!1.28e-48!34;UBERON:0003080!2.25e-48!42;UBERON:0000955!5.26e-48!69;UBERON:0006238!5.26e-48!69;UBERON:0002791!1.84e-46!33;UBERON:0002020!8.86e-45!34;UBERON:0003528!8.86e-45!34;UBERON:0001869!3.75e-44!32;UBERON:0000033!5.03e-41!123;UBERON:0000153!2.45e-40!129;UBERON:0007811!2.45e-40!129;UBERON:0000956!3.61e-40!25;UBERON:0000203!3.61e-40!25;UBERON:0002619!2.17e-37!22;UBERON:0001950!3.45e-37!20;UBERON:0004121!5.66e-37!169;UBERON:0000924!8.18e-36!173;UBERON:0006601!8.18e-36!173;UBERON:0007023!1.02e-28!115;UBERON:0007625!1.66e-20!11;UBERON:0000064!6.58e-20!219;UBERON:0000483!7.07e-17!309;UBERON:0000119!1.40e-16!312;UBERON:0000970!5.96e-16!20;UBERON:0001871!1.43e-15!7;UBERON:0002104!4.59e-15!21;UBERON:0000025!1.27e-14!194;UBERON:0004733!5.11e-14!12;UBERON:0002028!5.11e-14!12;UBERON:0007277!5.11e-14!12;UBERON:0000019!8.00e-14!19;UBERON:0000047!8.00e-14!19;UBERON:0004088!8.00e-14!19;UBERON:0003072!8.00e-14!19;UBERON:0003071!8.00e-14!19;UBERON:0004128!8.00e-14!19;UBERON:0001872!9.90e-14!5;UBERON:0003076!1.25e-13!15;UBERON:0003057!1.25e-13!15;UBERON:0002021!1.26e-13!5;UBERON:0000020!1.60e-13!23;UBERON:0001032!7.53e-13!24;UBERON:0004456!7.53e-13!24;UBERON:0004732!7.99e-13!13;UBERON:0000488!1.54e-12!4;UBERON:0001456!2.74e-12!21;UBERON:0000475!2.36e-11!365;UBERON:0002680!3.43e-11!9;UBERON:0001895!3.43e-11!9;UBERON:0010092!3.43e-11!9;UBERON:0000200!8.07e-11!6;UBERON:0000477!1.45e-10!286;UBERON:0004111!1.91e-10!241;UBERON:0002420!2.80e-10!9;UBERON:0007245!2.80e-10!9;UBERON:0010009!2.80e-10!9;UBERON:0010011!2.80e-10!9;UBERON:0000454!2.80e-10!9;UBERON:0001778!5.30e-10!3;UBERON:0001775!5.30e-10!3;UBERON:0000481!5.56e-10!347;UBERON:0001801!1.12e-09!14;UBERON:0000349!6.13e-09!5;UBERON:0000062!6.33e-09!511;UBERON:0002771!1.44e-08!3;UBERON:0002203!2.48e-08!6;UBERON:0001768!2.48e-08!6;UBERON:0005085!2.74e-08!29;UBERON:0002298!3.07e-08!8;UBERON:0002037!3.80e-08!6;UBERON:0006215!3.80e-08!6;UBERON:0000063!1.11e-07!97;UBERON:0010077!2.13e-07!4;UBERON:0005389!2.13e-07!4;UBERON:0000484!2.13e-07!4;UBERON:0002546!2.13e-07!4;UBERON:0000965!2.13e-07!4;UBERON:0001803!2.13e-07!4;UBERON:0003073!2.13e-07!4;UBERON:0005426!2.13e-07!4;UBERON:0002308!3.99e-07!9;UBERON:0000125!3.99e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;2.15e-33;11!UBERON:0000970;4.37e-30;20!UBERON:0002104;1.36e-28;21!UBERON:0000020;5.40e-26;23!UBERON:0000019;5.76e-25;19!UBERON:0000047;5.76e-25;19!UBERON:0004088;5.76e-25;19!UBERON:0010230;5.76e-25;19!UBERON:0001032;7.41e-25;24!UBERON:0004456;7.41e-25;24!UBERON:0001778;5.56e-24;3!UBERON:0001775;5.56e-24;3!UBERON:0001456;1.72e-22;21!UBERON:0001801;2.09e-19;14!UBERON:0000488;3.81e-18;4!UBERON:0010077;7.42e-18;4!UBERON:0005389;7.42e-18;4!UBERON:0000484;7.42e-18;4!UBERON:0000965;7.42e-18;4!UBERON:0001803;7.42e-18;4!UBERON:0002680;3.57e-14;9!UBERON:0001895;3.57e-14;9!UBERON:0002037;2.02e-12;6!UBERON:0002203;2.75e-12;6!UBERON:0001768;2.75e-12;6!UBERON:0002200;2.75e-12;6!UBERON:0010371;3.47e-11;31!UBERON:0004733;1.13e-10;12!UBERON:0002028;1.13e-10;12!UBERON:0004732;7.31e-10;13!UBERON:0000966;3.62e-07;5!UBERON:0005388;3.62e-07;5!UBERON:0001802;3.62e-07;5!UBERON:0006876;6.45e-07;11!UBERON:0001872;6.76e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.95e-33,11;UBERON:0000970,1.28e-28,21;UBERON:0002104,1.28e-28,21;UBERON:0000020,7.01e-25,24;UBERON:0001032,7.01e-25,24;UBERON:0004456,7.01e-25,24;UBERON:0001778,3.62e-24,3;UBERON:0001775,3.62e-24,3;UBERON:0000019,1.08e-23,20;UBERON:0000047,1.08e-23,20;UBERON:0010312,1.08e-23,20;UBERON:0004088,1.08e-23,20;UBERON:0010230,1.08e-23,20;UBERON:0003072,1.08e-23,20;UBERON:0004128,1.08e-23,20;UBERON:0003071,1.08e-23,20;UBERON:0001456,1.90e-21,22;UBERON:0003075,9.52e-21,82;UBERON:0007284,9.52e-21,82;UBERON:0002346,1.17e-19,86;UBERON:0001801,1.87e-19,14;UBERON:0000488,2.76e-18,4;UBERON:0010077,8.34e-18,4;UBERON:0005389,8.34e-18,4;UBERON:0000484,8.34e-18,4;UBERON:0002546,8.34e-18,4;UBERON:0000965,8.34e-18,4;UBERON:0001803,8.34e-18,4;UBERON:0003073,8.34e-18,4;UBERON:0005426,8.34e-18,4;UBERON:0010371,8.74e-16,104;UBERON:0003056,1.16e-15,61;UBERON:0005085,6.45e-15,31;UBERON:0002680,3.96e-14,9;UBERON:0001895,3.96e-14,9;UBERON:0010092,3.96e-14,9;UBERON:0002037,2.06e-12,6;UBERON:0006215,2.06e-12,6;UBERON:0002203,2.23e-12,6;UBERON:0001768,2.23e-12,6;UBERON:0002200,2.23e-12,6;UBERON:0010314,7.71e-12,132;UBERON:0004121,5.48e-11,171;UBERON:0000924,5.48e-11,171;UBERON:0006601,5.48e-11,171;UBERON:0004733,1.22e-10,12;UBERON:0002028,1.22e-10,12;UBERON:0007277,1.22e-10,12;UBERON:0004732,7.84e-10,13;UBERON:0000076,3.56e-09,8;UBERON:0001444,4.83e-09,49;UBERON:0003076,1.54e-08,15;UBERON:0003057,1.54e-08,15;UBERON:0000073,5.20e-08,53;UBERON:0002616,5.20e-08,53;UBERON:0000033,8.91e-08,56;UBERON:0001017,1.38e-07,81;UBERON:0001049,1.56e-07,56;UBERON:0005068,1.56e-07,56;UBERON:0006241,1.56e-07,56;UBERON:0007135,1.56e-07,56;UBERON:0006876,5.76e-07,11;UBERON:0001872,5.82e-07,5;UBERON:0000153,6.40e-07,62;UBERON:0007811,6.40e-07,62 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0.273748850145768,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.95569348133627,1.77383517970051,4.21606971327005,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,6.15827897208447,2.798848485415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857839051492628,0,0,0,0,0,0,1.44331342025273,9.04257158805599,1.29149563659404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27047312111232,2.60279707715243,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31205858279882,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,2.43074992906609,0,0,3.05163472634166,3.42795705786796,4.13766666534966,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606610196826093,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,28.6995540791276,0,0,0.189932387867636,0,0,0,0,0,2.1761953271524,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.625954653532499,0,0.776503360757966,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,1.41696576325585,0.319267718114302,0.205116364240755,0.504143392443436,0.345786262321089,0,0,0,0,0,0,0,0,0,0,0,5.47059807863165,0,0,0,0.202612753855184,1.56215619722769,0.206686796501184,0.253663240775627,1.64092442705466,0,0,0,0,1.60710550763486,0.336283722218824,0,0,0,0,0,2.17503145525861,0.263091094251396,0,0,0,0.157115589916002,0,0,0,0,41.2419659899307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.49732190632894,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620597975171371,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |||
|short_description=p8@PAX6 | |||
}} |
Latest revision as of 14:48, 17 September 2015
Short description: | p8@PAX6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PAX6_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000470027, ENST00000471303_5end |
EntrezGene: | PAX6 |
HGNC: | 8620 |
UniProt: | G3V4N4E9PS79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.62e-24 | 3 |
ciliated epithelial cell | 3.62e-24 | 3 |
multi-ciliated epithelial cell | 3.62e-24 | 3 |
non-pigmented ciliary epithelial cell | 3.62e-24 | 3 |
columnar/cuboidal epithelial cell | 8.30e-22 | 27 |
crystallin accumulating cell | 8.34e-18 | 4 |
vertebrate lens cell | 8.34e-18 | 4 |
lens epithelial cell | 8.34e-18 | 4 |
neurecto-epithelial cell | 1.49e-13 | 20 |
ecto-epithelial cell | 9.14e-08 | 34 |
embryonic stem cell | 2.88e-07 | 5 |
neurectodermal cell | 5.00e-07 | 59 |