FFCP PHASE1:Hg19::chr4:38665659..38665670,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:38665659..38665670,+ to FFCP PHASE1:Hg19::chr4:38665659..38665670,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51274 | |EntrezGene=51274 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16516 | |HGNC=16516 | ||
|TSSclassifier=strong | |||
|UniProt=P57682 | |UniProt=P57682 | ||
|association_with_transcript=-119bp_to_NM_016531,uc003gtg.2,uc003gth.3_5end | |||
|cluster_id=chr4:38665659..38665670,+ | |||
|coexpression_cluster_id=C175 | |||
|description=CAGE_peak_6_at_KLF3_5end | |||
|id=chr4:38665659..38665670,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.56e-13!42;CL:0000860!7.11e-12!45;CL:0000766!1.59e-10!76;CL:0000763!1.14e-09!112;CL:0000049!1.14e-09!112;CL:0000037!3.72e-09!172;CL:0000566!3.72e-09!172;CL:0000738!2.36e-08!140;CL:0000839!2.90e-08!70;CL:0002032!9.76e-08!165;CL:0000837!9.76e-08!165;CL:0000988!1.54e-07!182;CL:0002194!1.60e-07!63;CL:0000576!1.60e-07!63;CL:0000040!1.60e-07!63;CL:0000559!1.60e-07!63;CL:0002009!5.40e-07!65;CL:0000557!7.12e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.86e-17;33!CL:0002057;3.86e-17;33!CL:0000473;4.00e-12;39!CL:0000234;4.00e-12;39!CL:0000576;2.94e-10;48!CL:0000766;1.96e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.52e-16,42;CL:0002057,1.52e-16,42;CL:0000766,2.48e-15,72;CL:0000473,1.69e-14,48;CL:0000234,1.69e-14,48;CL:0000037,2.06e-14,168;CL:0000738,3.14e-14,136;CL:0002032,1.37e-12,161;CL:0000837,1.37e-12,161;CL:0000839,1.95e-12,66;CL:0002087,2.14e-12,115;CL:0000988,3.40e-12,177;CL:0000763,3.70e-12,108;CL:0000049,3.70e-12,108;CL:0002194,5.77e-12,59;CL:0000576,5.77e-12,59;CL:0000040,5.77e-12,59;CL:0000559,5.77e-12,59;CL:0002031,2.19e-11,120;CL:0002009,4.23e-11,61;CL:0000557,1.19e-10,67 | |||
|ontology_enrichment_development_v019=CL:0002057;6.13e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.64e-19!115;UBERON:0001049!1.16e-10!57;UBERON:0005068!1.16e-10!57;UBERON:0006241!1.16e-10!57;UBERON:0007135!1.16e-10!57;UBERON:0001017!3.34e-10!82;UBERON:0005743!5.81e-10!86;UBERON:0002390!1.11e-09!102;UBERON:0003061!1.11e-09!102;UBERON:0000073!1.37e-09!94;UBERON:0001016!1.37e-09!94;UBERON:0002616!3.36e-09!59;UBERON:0002193!5.31e-09!112;UBERON:0003080!1.04e-08!42;UBERON:0002780!2.31e-08!41;UBERON:0001890!2.31e-08!41;UBERON:0006240!2.31e-08!41;UBERON:0000955!1.71e-07!69;UBERON:0006238!1.71e-07!69;UBERON:0000178!8.92e-07!15;UBERON:0000179!8.92e-07!15;UBERON:0000463!8.92e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.90e-08;15!UBERON:0000179;3.90e-08;15!UBERON:0000463;3.90e-08;15!UBERON:0002780;6.08e-07;41!UBERON:0001890;6.08e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.76e-16,114;UBERON:0002390,9.43e-15,98;UBERON:0003061,9.43e-15,98;UBERON:0002193,3.36e-13,108;UBERON:0001017,3.51e-09,81;UBERON:0001049,3.56e-09,56;UBERON:0005068,3.56e-09,56;UBERON:0006241,3.56e-09,56;UBERON:0007135,3.56e-09,56;UBERON:0002371,4.71e-09,76;UBERON:0000073,5.80e-09,53;UBERON:0002616,5.80e-09,53;UBERON:0001016,6.83e-09,89;UBERON:0002405,2.52e-08,93;UBERON:0002780,6.26e-08,41;UBERON:0001890,6.26e-08,41;UBERON:0003080,6.26e-08,41;UBERON:0006240,6.26e-08,41;UBERON:0000178,6.26e-08,15;UBERON:0000179,6.26e-08,15;UBERON:0000463,6.26e-08,15;UBERON:0001474,2.24e-07,82 | |||
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| ||
|short_description=p6@KLF3 | |||
}} | }} |
Latest revision as of 15:58, 17 September 2015
Short description: | p6@KLF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KLF3_5end |
Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
Association with transcript: | -119bp_to_NM_016531, uc003gtg.2, uc003gth.3_5end |
EntrezGene: | KLF3 |
HGNC: | 16516 |
UniProt: | P57682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.52e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.52e-16 | 42 |
myeloid leukocyte | 2.48e-15 | 72 |
defensive cell | 1.69e-14 | 48 |
phagocyte | 1.69e-14 | 48 |
hematopoietic stem cell | 2.06e-14 | 168 |
leukocyte | 3.14e-14 | 136 |
hematopoietic oligopotent progenitor cell | 1.37e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.37e-12 | 161 |
myeloid lineage restricted progenitor cell | 1.95e-12 | 66 |
nongranular leukocyte | 2.14e-12 | 115 |
hematopoietic cell | 3.40e-12 | 177 |
myeloid cell | 3.70e-12 | 108 |
common myeloid progenitor | 3.70e-12 | 108 |
monopoietic cell | 5.77e-12 | 59 |
monocyte | 5.77e-12 | 59 |
monoblast | 5.77e-12 | 59 |
promonocyte | 5.77e-12 | 59 |
hematopoietic lineage restricted progenitor cell | 2.19e-11 | 120 |
macrophage dendritic cell progenitor | 4.23e-11 | 61 |
granulocyte monocyte progenitor cell | 1.19e-10 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.76e-16 | 114 |
hematopoietic system | 9.43e-15 | 98 |
blood island | 9.43e-15 | 98 |
hemolymphoid system | 3.36e-13 | 108 |
central nervous system | 3.51e-09 | 81 |
neural tube | 3.56e-09 | 56 |
neural rod | 3.56e-09 | 56 |
future spinal cord | 3.56e-09 | 56 |
neural keel | 3.56e-09 | 56 |
bone marrow | 4.71e-09 | 76 |
regional part of nervous system | 5.80e-09 | 53 |
regional part of brain | 5.80e-09 | 53 |
nervous system | 6.83e-09 | 89 |
immune system | 2.52e-08 | 93 |
regional part of forebrain | 6.26e-08 | 41 |
forebrain | 6.26e-08 | 41 |
anterior neural tube | 6.26e-08 | 41 |
future forebrain | 6.26e-08 | 41 |
blood | 6.26e-08 | 15 |
haemolymphatic fluid | 6.26e-08 | 15 |
organism substance | 6.26e-08 | 15 |
bone element | 2.24e-07 | 82 |