FFCP PHASE1:Hg19::chr5:41870475..41870494,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:41870475..41870494,- to FFCP PHASE1:Hg19::chr5:41870475..41870494,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5019 | |EntrezGene=5019 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8527 | |HGNC=8527 | ||
|TSSclassifier=strong | |||
|UniProt=P55809 | |UniProt=P55809 | ||
|association_with_transcript=126bp_to_ENST00000196371_5end | |||
|cluster_id=chr5:41870475..41870494,- | |||
|coexpression_cluster_id=C4500 | |||
|description=CAGE_peak_2_at_OXCT1_5end | |||
|id=chr5:41870475..41870494,- | |||
|ontology_enrichment_celltype=CL:0000838!1.26e-13!52;CL:0000542!3.88e-13!53;CL:0000051!3.88e-13!53;CL:0000084!4.30e-09!25;CL:0000827!4.30e-09!25;CL:0000791!9.55e-07!18;CL:0000789!9.55e-07!18;CL:0002420!9.55e-07!18;CL:0002419!9.55e-07!18;CL:0000790!9.55e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;4.26e-09;25!CL:0000542;9.04e-08;53!CL:0000791;9.72e-07;18!CL:0000789;9.72e-07;18!CL:0002419;9.72e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.25e-13,52;CL:0000542,3.84e-13,53;CL:0000051,3.84e-13,53;CL:0000084,4.27e-09,25;CL:0000827,4.27e-09,25;CL:0000791,9.50e-07,18;CL:0000789,9.50e-07,18;CL:0002420,9.50e-07,18;CL:0002419,9.50e-07,18;CL:0000790,9.50e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;9.04e-08;53!CL:0000790;9.72e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.64e-14!32;UBERON:0002780!3.29e-14!41;UBERON:0001890!3.29e-14!41;UBERON:0006240!3.29e-14!41;UBERON:0001893!6.88e-14!34;UBERON:0000955!1.93e-13!69;UBERON:0006238!1.93e-13!69;UBERON:0001017!2.10e-13!82;UBERON:0005743!2.11e-13!86;UBERON:0002020!2.73e-13!34;UBERON:0003528!2.73e-13!34;UBERON:0002791!2.97e-13!33;UBERON:0003080!2.99e-13!42;UBERON:0001049!5.80e-13!57;UBERON:0005068!5.80e-13!57;UBERON:0006241!5.80e-13!57;UBERON:0007135!5.80e-13!57;UBERON:0002616!6.12e-13!59;UBERON:0002619!1.28e-12!22;UBERON:0000073!1.94e-12!94;UBERON:0001016!1.94e-12!94;UBERON:0000956!3.15e-12!25;UBERON:0000203!3.15e-12!25;UBERON:0001950!7.16e-12!20;UBERON:0000153!1.58e-09!129;UBERON:0007811!1.58e-09!129;UBERON:0000033!2.85e-09!123;UBERON:0003056!5.91e-09!61;UBERON:0003075!1.04e-08!86;UBERON:0007284!1.04e-08!86;UBERON:0002346!8.58e-08!90;UBERON:0004121!1.34e-07!169;UBERON:0000924!4.89e-07!173;UBERON:0006601!4.89e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.33e-13;32!UBERON:0001893;1.06e-12;34!UBERON:0002619;1.17e-12;22!UBERON:0000956;2.68e-12;25!UBERON:0000203;2.68e-12;25!UBERON:0003528;3.04e-12;34!UBERON:0002020;3.04e-12;34!UBERON:0002791;3.06e-12;32!UBERON:0001950;6.87e-12;20!UBERON:0002780;2.32e-10;41!UBERON:0001890;2.32e-10;41!UBERON:0000073;1.66e-08;53!UBERON:0002616;1.66e-08;53!UBERON:0000955;1.61e-07;68!UBERON:0001017;4.52e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.62e-14,32;UBERON:0002780,3.25e-14,41;UBERON:0001890,3.25e-14,41;UBERON:0003080,3.25e-14,41;UBERON:0006240,3.25e-14,41;UBERON:0000955,3.77e-14,68;UBERON:0006238,3.77e-14,68;UBERON:0001017,4.81e-14,81;UBERON:0001893,6.80e-14,34;UBERON:0000073,7.78e-14,53;UBERON:0002616,7.78e-14,53;UBERON:0001049,9.54e-14,56;UBERON:0005068,9.54e-14,56;UBERON:0006241,9.54e-14,56;UBERON:0007135,9.54e-14,56;UBERON:0003528,2.70e-13,34;UBERON:0002020,2.70e-13,34;UBERON:0002791,4.85e-13,32;UBERON:0001016,5.78e-13,89;UBERON:0002619,1.27e-12,22;UBERON:0000956,3.12e-12,25;UBERON:0000203,3.12e-12,25;UBERON:0001950,7.08e-12,20;UBERON:0003075,1.99e-09,82;UBERON:0007284,1.99e-09,82;UBERON:0010314,4.18e-09,132;UBERON:0003056,5.90e-09,61;UBERON:0010371,6.14e-09,104;UBERON:0002346,2.02e-08,86;UBERON:0004121,2.64e-08,171;UBERON:0000924,2.64e-08,171;UBERON:0006601,2.64e-08,171 | |||
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| ||
|short_description=p2@OXCT1 | |||
}} | }} |
Latest revision as of 22:53, 17 September 2015
Short description: | p2@OXCT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_OXCT1_5end |
Coexpression cluster: | C4500_small_frontal_insula_Hep2_non_amygdala_paracentral |
Association with transcript: | 126bp_to_ENST00000196371_5end |
EntrezGene: | OXCT1 |
HGNC: | 8527 |
UniProt: | P55809 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.25e-13 | 52 |
lymphocyte | 3.84e-13 | 53 |
common lymphoid progenitor | 3.84e-13 | 53 |
T cell | 4.27e-09 | 25 |
pro-T cell | 4.27e-09 | 25 |
mature alpha-beta T cell | 9.50e-07 | 18 |
alpha-beta T cell | 9.50e-07 | 18 |
immature T cell | 9.50e-07 | 18 |
mature T cell | 9.50e-07 | 18 |
immature alpha-beta T cell | 9.50e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.62e-14 | 32 |
regional part of forebrain | 3.25e-14 | 41 |
forebrain | 3.25e-14 | 41 |
anterior neural tube | 3.25e-14 | 41 |
future forebrain | 3.25e-14 | 41 |
brain | 3.77e-14 | 68 |
future brain | 3.77e-14 | 68 |
central nervous system | 4.81e-14 | 81 |
telencephalon | 6.80e-14 | 34 |
regional part of nervous system | 7.78e-14 | 53 |
regional part of brain | 7.78e-14 | 53 |
neural tube | 9.54e-14 | 56 |
neural rod | 9.54e-14 | 56 |
future spinal cord | 9.54e-14 | 56 |
neural keel | 9.54e-14 | 56 |
brain grey matter | 2.70e-13 | 34 |
gray matter | 2.70e-13 | 34 |
regional part of telencephalon | 4.85e-13 | 32 |
nervous system | 5.78e-13 | 89 |
regional part of cerebral cortex | 1.27e-12 | 22 |
cerebral cortex | 3.12e-12 | 25 |
pallium | 3.12e-12 | 25 |
neocortex | 7.08e-12 | 20 |
neural plate | 1.99e-09 | 82 |
presumptive neural plate | 1.99e-09 | 82 |
structure with developmental contribution from neural crest | 4.18e-09 | 132 |
pre-chordal neural plate | 5.90e-09 | 61 |
ecto-epithelium | 6.14e-09 | 104 |
neurectoderm | 2.02e-08 | 86 |
ectoderm-derived structure | 2.64e-08 | 171 |
ectoderm | 2.64e-08 | 171 |
presumptive ectoderm | 2.64e-08 | 171 |