FFCP PHASE1:Hg19::chr4:5891932..5891960,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:5891932..5891960,-
|short_description=p4@CRMP1
|description=CAGE_peak_4_at_CRMP1_5end
|association_with_transcript=-14bp_to_ENST00000512574,uc003gir.2_5end...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1400 | |EntrezGene=1400 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2365 | |HGNC=2365 | ||
|TSSclassifier=strong | |||
|UniProt=E9PD68 | |UniProt=E9PD68 | ||
|association_with_transcript=-14bp_to_ENST00000512574,uc003gir.2_5end | |||
|cluster_id=chr4:5891932..5891960,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_4_at_CRMP1_5end | |||
|id=chr4:5891932..5891960,- | |||
|ontology_enrichment_celltype=CL:0000047!6.43e-17!8;CL:0002319!2.05e-13!25;CL:0000540!4.73e-13!6;CL:0000031!4.73e-13!6;CL:0000404!4.73e-13!6;CL:0000133!4.14e-12!59;CL:0002322!4.14e-10!5;CL:0000221!4.71e-09!71 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.46e-29;6!CL:0000404;1.46e-29;6!CL:0002319;3.67e-20;25!CL:0000047;3.17e-11;2!CL:0000123;6.24e-11;2!CL:0000242;6.24e-11;2!CL:0000333;9.00e-10;5!CL:0002321;4.37e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.29e-39,8;CL:0000540,8.31e-30,6;CL:0000031,8.31e-30,6;CL:0000404,8.31e-30,6;CL:0002319,2.50e-20,25;CL:0000133,3.96e-13,59;CL:0000242,4.30e-11,2;CL:0000221,2.68e-10,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.46e-29;6!CL:0000133;3.64e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;3.26e-08;6!DOID:171;3.33e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,2.89e-08,6;DOID:171,3.09e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!8.31e-68!94;UBERON:0001016!8.31e-68!94;UBERON:0001017!2.49e-67!82;UBERON:0005743!1.00e-65!86;UBERON:0001049!1.17e-58!57;UBERON:0005068!1.17e-58!57;UBERON:0006241!1.17e-58!57;UBERON:0007135!1.17e-58!57;UBERON:0002616!1.25e-48!59;UBERON:0000955!1.87e-48!69;UBERON:0006238!1.87e-48!69;UBERON:0002346!7.58e-45!90;UBERON:0003075!1.53e-43!86;UBERON:0007284!1.53e-43!86;UBERON:0002780!1.43e-40!41;UBERON:0001890!1.43e-40!41;UBERON:0006240!1.43e-40!41;UBERON:0003080!2.20e-39!42;UBERON:0000924!6.45e-38!173;UBERON:0006601!6.45e-38!173;UBERON:0004121!1.84e-36!169;UBERON:0003056!2.54e-31!61;UBERON:0001893!9.83e-30!34;UBERON:0002020!2.18e-29!34;UBERON:0003528!2.18e-29!34;UBERON:0002791!3.19e-28!33;UBERON:0000033!2.47e-27!123;UBERON:0001869!5.40e-27!32;UBERON:0000153!1.56e-26!129;UBERON:0007811!1.56e-26!129;UBERON:0002619!6.60e-26!22;UBERON:0000956!1.37e-24!25;UBERON:0000203!1.37e-24!25;UBERON:0007023!2.29e-23!115;UBERON:0001950!8.88e-23!20;UBERON:0003076!4.73e-20!15;UBERON:0003057!4.73e-20!15;UBERON:0004733!6.81e-16!12;UBERON:0002028!6.81e-16!12;UBERON:0007277!6.81e-16!12;UBERON:0002680!7.75e-15!9;UBERON:0001895!7.75e-15!9;UBERON:0010092!7.75e-15!9;UBERON:0004732!1.80e-14!13;UBERON:0001894!6.17e-13!7;UBERON:0006222!6.17e-13!7;UBERON:0000025!1.62e-11!194;UBERON:0002037!1.01e-10!6;UBERON:0006215!1.01e-10!6;UBERON:0001872!6.18e-10!5;UBERON:0003296!1.39e-08!4;UBERON:0010133!1.39e-08!4;UBERON:0000922!1.85e-08!612;UBERON:0001871!2.49e-08!7;UBERON:0000200!6.62e-08!6;UBERON:0000064!1.31e-07!219;UBERON:0004111!2.38e-07!241;UBERON:0002298!3.18e-07!8;UBERON:0000483!3.20e-07!309;UBERON:0000119!5.09e-07!312;UBERON:0000013!6.83e-07!5;UBERON:0002410!6.83e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;6.20e-14;20!UBERON:0002619;1.30e-12;22!UBERON:0003296;1.25e-11;4!UBERON:0010133;1.25e-11;4!UBERON:0000956;5.15e-11;25!UBERON:0000203;5.15e-11;25!UBERON:0001905;6.24e-11;2!UBERON:0002757;6.24e-11;2!UBERON:0010134;6.24e-11;2!UBERON:0005408;6.24e-11;2!UBERON:0001899;6.24e-11;2!UBERON:0000013;9.00e-10;5!UBERON:0002410;9.00e-10;5!UBERON:0000955;3.97e-09;68!UBERON:0002780;1.30e-08;41!UBERON:0001890;1.30e-08;41!UBERON:0001016;7.98e-08;83!UBERON:0001869;1.41e-07;32!UBERON:0002791;3.20e-07;32!UBERON:0000073;3.30e-07;53!UBERON:0002616;3.30e-07;53!UBERON:0001893;3.78e-07;34!UBERON:0003528;4.26e-07;34!UBERON:0002020;4.26e-07;34!UBERON:0001894;7.83e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.33e-30,89;UBERON:0001017,3.34e-26,81;UBERON:0004121,1.28e-17,171;UBERON:0000924,1.28e-17,171;UBERON:0006601,1.28e-17,171;UBERON:0011216,2.54e-14,223;UBERON:0001950,1.10e-13,20;UBERON:0002619,2.17e-12,22;UBERON:0000955,2.25e-12,68;UBERON:0006238,2.25e-12,68;UBERON:0002780,7.62e-12,41;UBERON:0001890,7.62e-12,41;UBERON:0003080,7.62e-12,41;UBERON:0006240,7.62e-12,41;UBERON:0003296,1.98e-11,4;UBERON:0010133,1.98e-11,4;UBERON:0000956,8.10e-11,25;UBERON:0000203,8.10e-11,25;UBERON:0001905,9.55e-11,2;UBERON:0002757,9.55e-11,2;UBERON:0010134,9.55e-11,2;UBERON:0005408,9.55e-11,2;UBERON:0001899,9.55e-11,2;UBERON:0000073,1.73e-10,53;UBERON:0002616,1.73e-10,53;UBERON:0000013,7.77e-10,5;UBERON:0002410,7.77e-10,5;UBERON:0001049,8.19e-10,56;UBERON:0005068,8.19e-10,56;UBERON:0006241,8.19e-10,56;UBERON:0007135,8.19e-10,56;UBERON:0003056,8.00e-09,61;UBERON:0002791,2.89e-08,32;UBERON:0001869,2.89e-08,32;UBERON:0002346,6.59e-08,86;UBERON:0003528,1.00e-07,34;UBERON:0002020,1.00e-07,34;UBERON:0001893,1.00e-07,34;UBERON:0010371,3.49e-07,104;UBERON:0003075,3.65e-07,82;UBERON:0007284,3.65e-07,82 | |||
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| ||
|short_description=p4@CRMP1 | |||
}} | }} |
Latest revision as of 04:01, 18 September 2015
Short description: | p4@CRMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CRMP1_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -14bp_to_ENST00000512574, uc003gir.2_5end |
EntrezGene: | CRMP1 |
HGNC: | 2365 |
UniProt: | E9PD68 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.29e-39 | 8 |
neuron | 8.31e-30 | 6 |
neuroblast | 8.31e-30 | 6 |
electrically signaling cell | 8.31e-30 | 6 |
neural cell | 2.50e-20 | 25 |
neurectodermal cell | 3.96e-13 | 59 |
Merkel cell | 4.30e-11 | 2 |
ectodermal cell | 2.68e-10 | 72 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 2.89e-08 | 6 |
neuroectodermal tumor | 3.09e-08 | 10 |