FFCP PHASE1:Hg19::chr15:60296504..60296518,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27023 | |EntrezGene=27023 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3799 | |HGNC=3799 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=71bp_to_ENST00000560857_5end | |association_with_transcript=71bp_to_ENST00000560857_5end | ||
|cluster_id=chr15:60296504..60296518,+ | |||
|description=CAGE_peak_3_at_FOXB1_5end | |description=CAGE_peak_3_at_FOXB1_5end | ||
|id=chr15:60296504..60296518,+ | |id=chr15:60296504..60296518,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.59e-18!5;CL:0002541!2.20e-11!3 | |ontology_enrichment_celltype=CL:0002322!1.59e-18!5;CL:0002541!2.20e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.91e-25;5!CL:0002541;1.25e-11;3!CL:0002321;1.26e-08;15!CL:0000148;1.09e-07;10 | |ontology_enrichment_celltype_v019=CL:0002322;1.91e-25;5!CL:0002541;1.25e-11;3!CL:0002321;1.26e-08;15!CL:0000148;1.09e-07;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.18e-25,5;CL:0002541,1.77e-11,3;CL:0000148,9.60e-08,10;CL:0000541,9.60e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.46e-25;3!UBERON:0003057;9.46e-25;3 | |ontology_enrichment_development_v019=UBERON:0006241;9.46e-25;3!UBERON:0003057;9.46e-25;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0050619;1.49e-09;1!DOID:1357;1.49e-09;1 | |ontology_enrichment_disease_v019=DOID:0050619;1.49e-09;1!DOID:1357;1.49e-09;1 | ||
|ontology_enrichment_disease_v019_2=DOID:0050619,1.12e-09,1;DOID:1357,1.12e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0003076!7.16e-28!15;UBERON:0003057!7.16e-28!15;UBERON:0002298!2.31e-22!8;UBERON:0001049!4.45e-22!57;UBERON:0005068!4.45e-22!57;UBERON:0006241!4.45e-22!57;UBERON:0007135!4.45e-22!57;UBERON:0004733!1.43e-18!12;UBERON:0002028!1.43e-18!12;UBERON:0007277!1.43e-18!12;UBERON:0004732!4.95e-17!13;UBERON:0001017!8.00e-17!82;UBERON:0005743!8.55e-16!86;UBERON:0002616!7.57e-15!59;UBERON:0002308!5.83e-14!9;UBERON:0000125!5.83e-14!9;UBERON:0000073!8.53e-14!94;UBERON:0001016!8.53e-14!94;UBERON:0003075!5.98e-13!86;UBERON:0007284!5.98e-13!86;UBERON:0002346!3.73e-12!90;UBERON:0001896!3.75e-12!3;UBERON:0005290!3.75e-12!3;UBERON:0010096!3.75e-12!3;UBERON:0000988!4.34e-12!3;UBERON:0006331!4.50e-12!3;UBERON:0002240!4.67e-12!3;UBERON:0000955!7.18e-12!69;UBERON:0006238!7.18e-12!69;UBERON:0000476!2.20e-11!3;UBERON:0000920!2.20e-11!3;UBERON:0002680!6.03e-10!9;UBERON:0001895!6.03e-10!9;UBERON:0010092!6.03e-10!9;UBERON:0002148!7.66e-09!2;UBERON:0009662!7.66e-09!2;UBERON:0001897!1.86e-08!2;UBERON:0001894!1.89e-08!7;UBERON:0006222!1.89e-08!7;UBERON:0009663!3.94e-08!7;UBERON:0001875!4.12e-08!2;UBERON:0006514!4.12e-08!2;UBERON:0005174!2.22e-07!5;UBERON:0001137!2.22e-07!5;UBERON:0004121!7.71e-07!169 | |ontology_enrichment_uberon=UBERON:0003076!7.16e-28!15;UBERON:0003057!7.16e-28!15;UBERON:0002298!2.31e-22!8;UBERON:0001049!4.45e-22!57;UBERON:0005068!4.45e-22!57;UBERON:0006241!4.45e-22!57;UBERON:0007135!4.45e-22!57;UBERON:0004733!1.43e-18!12;UBERON:0002028!1.43e-18!12;UBERON:0007277!1.43e-18!12;UBERON:0004732!4.95e-17!13;UBERON:0001017!8.00e-17!82;UBERON:0005743!8.55e-16!86;UBERON:0002616!7.57e-15!59;UBERON:0002308!5.83e-14!9;UBERON:0000125!5.83e-14!9;UBERON:0000073!8.53e-14!94;UBERON:0001016!8.53e-14!94;UBERON:0003075!5.98e-13!86;UBERON:0007284!5.98e-13!86;UBERON:0002346!3.73e-12!90;UBERON:0001896!3.75e-12!3;UBERON:0005290!3.75e-12!3;UBERON:0010096!3.75e-12!3;UBERON:0000988!4.34e-12!3;UBERON:0006331!4.50e-12!3;UBERON:0002240!4.67e-12!3;UBERON:0000955!7.18e-12!69;UBERON:0006238!7.18e-12!69;UBERON:0000476!2.20e-11!3;UBERON:0000920!2.20e-11!3;UBERON:0002680!6.03e-10!9;UBERON:0001895!6.03e-10!9;UBERON:0010092!6.03e-10!9;UBERON:0002148!7.66e-09!2;UBERON:0009662!7.66e-09!2;UBERON:0001897!1.86e-08!2;UBERON:0001894!1.89e-08!7;UBERON:0006222!1.89e-08!7;UBERON:0009663!3.94e-08!7;UBERON:0001875!4.12e-08!2;UBERON:0006514!4.12e-08!2;UBERON:0005174!2.22e-07!5;UBERON:0001137!2.22e-07!5;UBERON:0004121!7.71e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;8.26e-34;6!UBERON:0001896;9.46e-25;3!UBERON:0002240;9.46e-25;3!UBERON:0005174;9.46e-25;3!UBERON:0005290;9.46e-25;3!UBERON:0001137;9.46e-25;3!UBERON:0002148;1.21e-17;2!UBERON:0006331;1.21e-17;2!UBERON:0009662;1.21e-17;2!UBERON:0004733;7.12e-17;12!UBERON:0002028;7.12e-17;12!UBERON:0004732;1.44e-15;13!UBERON:0000988;4.47e-12;3!UBERON:0003124;1.25e-11;3!UBERON:0000920;1.25e-11;3!UBERON:0001764;1.49e-09;1!UBERON:0001825;1.49e-09;1!UBERON:0000125;1.05e-08;9!UBERON:0002308;1.05e-08;9 | |ontology_enrichment_uberon_v019=UBERON:0002298;8.26e-34;6!UBERON:0001896;9.46e-25;3!UBERON:0002240;9.46e-25;3!UBERON:0005174;9.46e-25;3!UBERON:0005290;9.46e-25;3!UBERON:0001137;9.46e-25;3!UBERON:0002148;1.21e-17;2!UBERON:0006331;1.21e-17;2!UBERON:0009662;1.21e-17;2!UBERON:0004733;7.12e-17;12!UBERON:0002028;7.12e-17;12!UBERON:0004732;1.44e-15;13!UBERON:0000988;4.47e-12;3!UBERON:0003124;1.25e-11;3!UBERON:0000920;1.25e-11;3!UBERON:0001764;1.49e-09;1!UBERON:0001825;1.49e-09;1!UBERON:0000125;1.05e-08;9!UBERON:0002308;1.05e-08;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,7.00e-34,6;UBERON:0003076,1.75e-33,15;UBERON:0003057,1.75e-33,15;UBERON:0001896,6.86e-25,3;UBERON:0005290,6.86e-25,3;UBERON:0010096,6.86e-25,3;UBERON:0002240,1.12e-24,3;UBERON:0005174,1.12e-24,3;UBERON:0001137,1.12e-24,3;UBERON:0002148,1.37e-17,2;UBERON:0006331,1.37e-17,2;UBERON:0009662,1.37e-17,2;UBERON:0004733,6.57e-17,12;UBERON:0002028,6.57e-17,12;UBERON:0007277,6.57e-17,12;UBERON:0004732,1.34e-15,13;UBERON:0001049,1.44e-12,56;UBERON:0005068,1.44e-12,56;UBERON:0006241,1.44e-12,56;UBERON:0007135,1.44e-12,56;UBERON:0000988,4.86e-12,3;UBERON:0000920,1.77e-11,3;UBERON:0001017,6.62e-10,81;UBERON:0001764,1.12e-09,1;UBERON:0001825,1.12e-09,1;UBERON:0001016,9.32e-09,89;UBERON:0000125,1.12e-08,9;UBERON:0002308,1.12e-08,9;UBERON:0003075,3.92e-08,82;UBERON:0007284,3.92e-08,82;UBERON:0002346,1.10e-07,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,1.72288698817931,1.39432731443422,1.86589899027667,2.52320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0.113942055847001,0,0,0,2.23300811812344,0.183195186803725,1.06606955203727,1.02193298195737,0,0.166211681900156,0,0,0,0,0,0,0.816164040795739,0,0,0,0,0,0,0.123563938946503,0,0.134802265961354,0,0.702793337176017,0,0.19566461893209,0,0,0,0,0,0.60129367765797,1.65901106235595,0,0,0,0,1.13843818411917,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.23214841002794,0,0,2.89176089707246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92903778158023,0.687697182986169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05231301873347,0,0,0,0,5.55916712354667,2.24795422962573,0,0,0,0,0,0,0,0,0,0,0,0,0,2.66991963625398,0,0,0,2.29363678276028,1.88579387612649,2.29756690883119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0.672567444437648,0,0,0,0,0,0.951576261675644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,3.32118255846682,0,0,0,0,0,2.74831853960923,1.18818560130834,2.113278637917,0,0,0,0,0,0.352894871715692,0,0,0,0.860037498908708,2.20880187070458,0,0,0,0,0,0,0,0.546327859818478,0,0,0.26721740526556,0.0918948995348449,0,0,0,2.48750831837634,0.827463966895162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,1.72288698817931,1.39432731443422,1.86589899027667,2.52320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0.113942055847001,0,0,0,2.23300811812344,0.183195186803725,1.06606955203727,1.02193298195737,0,0.166211681900156,0,0,0,0,0,0,0.816164040795739,0,0,0,0,0,0,0.123563938946503,0,0.134802265961354,0,0.702793337176017,0,0.19566461893209,0,0,0,0,0,0.60129367765797,1.65901106235595,0,0,0,0,1.13843818411917,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.23214841002794,0,0,2.89176089707246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92903778158023,0.687697182986169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05231301873347,0,0,0,0,5.55916712354667,2.24795422962573,0,0,0,0,0,0,0,0,0,0,0,0,0,2.66991963625398,0,0,0,2.29363678276028,1.88579387612649,2.29756690883119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0.672567444437648,0,0,0,0,0,0.951576261675644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,3.32118255846682,0,0,0,0,0,2.74831853960923,1.18818560130834,2.113278637917,0,0,0,0,0,0.352894871715692,0,0,0,0.860037498908708,2.20880187070458,0,0,0,0,0,0,0,0.546327859818478,0,0,0.26721740526556,0.0918948995348449,0,0,0,2.48750831837634,0.827463966895162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@FOXB1 | |short_description=p3@FOXB1 | ||
}} | }} |
Latest revision as of 09:37, 18 September 2015
Short description: | p3@FOXB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FOXB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 71bp_to_ENST00000560857_5end |
EntrezGene: | FOXB1 |
HGNC: | 3799 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.18e-25 | 5 |
chorionic membrane mesenchymal stem cell | 1.77e-11 | 3 |
melanocyte | 9.60e-08 | 10 |
melanoblast | 9.60e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
brainstem | 7.00e-34 | 6 |
posterior neural tube | 1.75e-33 | 15 |
chordal neural plate | 1.75e-33 | 15 |
medulla oblongata | 6.86e-25 | 3 |
myelencephalon | 6.86e-25 | 3 |
future myelencephalon | 6.86e-25 | 3 |
spinal cord | 1.12e-24 | 3 |
dorsal region element | 1.12e-24 | 3 |
dorsum | 1.12e-24 | 3 |
locus ceruleus | 1.37e-17 | 2 |
brainstem nucleus | 1.37e-17 | 2 |
hindbrain nucleus | 1.37e-17 | 2 |
segmental subdivision of hindbrain | 6.57e-17 | 12 |
hindbrain | 6.57e-17 | 12 |
presumptive hindbrain | 6.57e-17 | 12 |
segmental subdivision of nervous system | 1.34e-15 | 13 |
neural tube | 1.44e-12 | 56 |
neural rod | 1.44e-12 | 56 |
future spinal cord | 1.44e-12 | 56 |
neural keel | 1.44e-12 | 56 |
pons | 4.86e-12 | 3 |
egg chorion | 1.77e-11 | 3 |
central nervous system | 6.62e-10 | 81 |
maxillary sinus | 1.12e-09 | 1 |
paranasal sinus | 1.12e-09 | 1 |
nervous system | 9.32e-09 | 89 |
neural nucleus | 1.12e-08 | 9 |
nucleus of brain | 1.12e-08 | 9 |
neural plate | 3.92e-08 | 82 |
presumptive neural plate | 3.92e-08 | 82 |
neurectoderm | 1.10e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 1.12e-09 | 1 |
maxillary sinus cancer | 1.12e-09 | 1 |