FFCP PHASE1:Hg19::chr11:74459876..74459930,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=254225 | |EntrezGene=254225 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26961 | |HGNC=26961 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NCN4 | |UniProt=Q8NCN4 | ||
|association_with_transcript=0bp_to_ENST00000299563,NM_001098638,uc001ovl.3_5end | |association_with_transcript=0bp_to_ENST00000299563,NM_001098638,uc001ovl.3_5end | ||
|cluster_id=chr11:74459876..74459930,+ | |||
|coexpression_cluster_id=C468 | |||
|description=CAGE_peak_1_at_RNF169_5end | |description=CAGE_peak_1_at_RNF169_5end | ||
|id=chr11:74459876..74459930,+ | |id=chr11:74459876..74459930,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.14e-20!140;CL:0000037!8.16e-19!172;CL:0000566!8.16e-19!172;CL:0002032!3.54e-17!165;CL:0000837!3.54e-17!165;CL:0000988!1.07e-16!182;CL:0000766!2.58e-16!76;CL:0002087!5.36e-15!119;CL:0002031!2.46e-14!124;CL:0000763!1.86e-13!112;CL:0000049!1.86e-13!112;CL:0000557!1.77e-12!71;CL:0000839!3.08e-11!70;CL:0000860!3.23e-11!45;CL:0002194!4.33e-11!63;CL:0000576!4.33e-11!63;CL:0000040!4.33e-11!63;CL:0000559!4.33e-11!63;CL:0002009!5.79e-11!65;CL:0002057!1.72e-10!42 | |ontology_enrichment_celltype=CL:0000738!3.14e-20!140;CL:0000037!8.16e-19!172;CL:0000566!8.16e-19!172;CL:0002032!3.54e-17!165;CL:0000837!3.54e-17!165;CL:0000988!1.07e-16!182;CL:0000766!2.58e-16!76;CL:0002087!5.36e-15!119;CL:0002031!2.46e-14!124;CL:0000763!1.86e-13!112;CL:0000049!1.86e-13!112;CL:0000557!1.77e-12!71;CL:0000839!3.08e-11!70;CL:0000860!3.23e-11!45;CL:0002194!4.33e-11!63;CL:0000576!4.33e-11!63;CL:0000040!4.33e-11!63;CL:0000559!4.33e-11!63;CL:0002009!5.79e-11!65;CL:0002057!1.72e-10!42 | ||
|ontology_enrichment_celltype_v019=CL:0000860;5.56e-08;33!CL:0002057;5.56e-08;33!CL:0000576;2.13e-07;48!CL:0000766;3.54e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.84e-20,136;CL:0000037,2.20e-18,168;CL:0002032,9.29e-17,161;CL:0000837,9.29e-17,161;CL:0000988,1.27e-16,177;CL:0000766,4.72e-16,72;CL:0002087,1.27e-14,115;CL:0002031,5.88e-14,120;CL:0000763,4.34e-13,108;CL:0000049,4.34e-13,108;CL:0000557,3.51e-12,67;CL:0000839,6.29e-11,66;CL:0002194,8.46e-11,59;CL:0000576,8.46e-11,59;CL:0000040,8.46e-11,59;CL:0000559,8.46e-11,59;CL:0002009,1.15e-10,61;CL:0000860,1.72e-10,42;CL:0002057,1.72e-10,42;CL:0000473,1.12e-09,48;CL:0000234,1.12e-09,48 | |||
|ontology_enrichment_development_v019=CL:0002057;1.11e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.25e-26!115;UBERON:0001049!5.95e-15!57;UBERON:0005068!5.95e-15!57;UBERON:0006241!5.95e-15!57;UBERON:0007135!5.95e-15!57;UBERON:0002390!6.35e-14!102;UBERON:0003061!6.35e-14!102;UBERON:0002193!1.77e-13!112;UBERON:0000073!5.84e-13!94;UBERON:0001016!5.84e-13!94;UBERON:0003080!1.31e-12!42;UBERON:0001017!2.01e-12!82;UBERON:0005743!2.08e-12!86;UBERON:0002780!3.32e-12!41;UBERON:0001890!3.32e-12!41;UBERON:0006240!3.32e-12!41;UBERON:0000955!7.56e-12!69;UBERON:0006238!7.56e-12!69;UBERON:0002616!3.61e-11!59;UBERON:0002020!1.21e-10!34;UBERON:0003528!1.21e-10!34;UBERON:0001893!3.20e-10!34;UBERON:0002791!3.42e-10!33;UBERON:0002371!2.19e-09!80;UBERON:0001869!3.07e-09!32;UBERON:0002346!1.78e-08!90;UBERON:0001474!2.61e-08!86;UBERON:0002619!6.04e-08!22;UBERON:0003075!1.66e-07!86;UBERON:0007284!1.66e-07!86;UBERON:0000956!2.26e-07!25;UBERON:0000203!2.26e-07!25;UBERON:0001950!4.39e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.30e-09;41!UBERON:0001890;2.30e-09;41!UBERON:0003528;5.51e-09;34!UBERON:0002020;5.51e-09;34!UBERON:0002791;7.91e-09;32!UBERON:0001893;1.49e-08;34!UBERON:0000073;1.77e-08;53!UBERON:0002616;1.77e-08;53!UBERON:0001869;1.79e-08;32!UBERON:0002619;5.47e-08;22!UBERON:0000956;2.05e-07;25!UBERON:0000203;2.05e-07;25!UBERON:0007023;3.54e-07;114!UBERON:0001950;4.12e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.17e-26,114;UBERON:0001049,1.50e-14,56;UBERON:0005068,1.50e-14,56;UBERON:0006241,1.50e-14,56;UBERON:0007135,1.50e-14,56;UBERON:0002390,1.43e-13,98;UBERON:0003061,1.43e-13,98;UBERON:0000073,2.70e-13,53;UBERON:0002616,2.70e-13,53;UBERON:0002193,4.13e-13,108;UBERON:0001016,1.32e-12,89;UBERON:0002780,3.32e-12,41;UBERON:0001890,3.32e-12,41;UBERON:0003080,3.32e-12,41;UBERON:0006240,3.32e-12,41;UBERON:0001017,4.54e-12,81;UBERON:0000955,1.73e-11,68;UBERON:0006238,1.73e-11,68;UBERON:0003528,1.21e-10,34;UBERON:0002020,1.21e-10,34;UBERON:0001893,3.20e-10,34;UBERON:0002791,9.46e-10,32;UBERON:0002405,1.55e-09,93;UBERON:0001869,3.07e-09,32;UBERON:0002371,4.77e-09,76;UBERON:0002346,2.01e-08,86;UBERON:0001474,5.72e-08,82;UBERON:0002619,6.04e-08,22;UBERON:0003075,1.92e-07,82;UBERON:0007284,1.92e-07,82;UBERON:0000956,2.26e-07,25;UBERON:0000203,2.26e-07,25;UBERON:0001950,4.39e-07,20 | |||
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| ||
|short_description=p1@RNF169 | |short_description=p1@RNF169 | ||
}} | }} |
Latest revision as of 05:09, 20 September 2015
Short description: | p1@RNF169 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF169_5end |
Coexpression cluster: | C468_Neutrophils_Eosinophils_cerebellum_occipital_Whole_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000299563, NM_001098638, uc001ovl.3_5end |
EntrezGene: | RNF169 |
HGNC: | 26961 |
UniProt: | Q8NCN4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.84e-20 | 136 |
hematopoietic stem cell | 2.20e-18 | 168 |
hematopoietic oligopotent progenitor cell | 9.29e-17 | 161 |
hematopoietic multipotent progenitor cell | 9.29e-17 | 161 |
hematopoietic cell | 1.27e-16 | 177 |
myeloid leukocyte | 4.72e-16 | 72 |
nongranular leukocyte | 1.27e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 5.88e-14 | 120 |
myeloid cell | 4.34e-13 | 108 |
common myeloid progenitor | 4.34e-13 | 108 |
granulocyte monocyte progenitor cell | 3.51e-12 | 67 |
myeloid lineage restricted progenitor cell | 6.29e-11 | 66 |
monopoietic cell | 8.46e-11 | 59 |
monocyte | 8.46e-11 | 59 |
monoblast | 8.46e-11 | 59 |
promonocyte | 8.46e-11 | 59 |
macrophage dendritic cell progenitor | 1.15e-10 | 61 |
classical monocyte | 1.72e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.72e-10 | 42 |
defensive cell | 1.12e-09 | 48 |
phagocyte | 1.12e-09 | 48 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.17e-26 | 114 |
neural tube | 1.50e-14 | 56 |
neural rod | 1.50e-14 | 56 |
future spinal cord | 1.50e-14 | 56 |
neural keel | 1.50e-14 | 56 |
hematopoietic system | 1.43e-13 | 98 |
blood island | 1.43e-13 | 98 |
regional part of nervous system | 2.70e-13 | 53 |
regional part of brain | 2.70e-13 | 53 |
hemolymphoid system | 4.13e-13 | 108 |
nervous system | 1.32e-12 | 89 |
regional part of forebrain | 3.32e-12 | 41 |
forebrain | 3.32e-12 | 41 |
anterior neural tube | 3.32e-12 | 41 |
future forebrain | 3.32e-12 | 41 |
central nervous system | 4.54e-12 | 81 |
brain | 1.73e-11 | 68 |
future brain | 1.73e-11 | 68 |
brain grey matter | 1.21e-10 | 34 |
gray matter | 1.21e-10 | 34 |
telencephalon | 3.20e-10 | 34 |
regional part of telencephalon | 9.46e-10 | 32 |
immune system | 1.55e-09 | 93 |
cerebral hemisphere | 3.07e-09 | 32 |
bone marrow | 4.77e-09 | 76 |
neurectoderm | 2.01e-08 | 86 |
bone element | 5.72e-08 | 82 |
regional part of cerebral cortex | 6.04e-08 | 22 |
neural plate | 1.92e-07 | 82 |
presumptive neural plate | 1.92e-07 | 82 |
cerebral cortex | 2.26e-07 | 25 |
pallium | 2.26e-07 | 25 |
neocortex | 4.39e-07 | 20 |