FFCP PHASE1:Hg19::chr18:77905923..77905938,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:77905923..77905938,+
|short_description=p1@LOC100130522
|description=CAGE_peak_1_at_LOC100130522_5end
|association_with_transcript=116bp_to_ENST0000042483...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100130522 | |EntrezGene=100130522 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=116bp_to_ENST00000424835,NR_028339,NR_028340,uc002lnx.2,uc010xfn.1,uc010xfo.1_5end | |||
|cluster_id=chr18:77905923..77905938,+ | |||
|coexpression_cluster_id=C274 | |||
|description=CAGE_peak_1_at_LOC100130522_5end | |||
|id=chr18:77905923..77905938,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.23e-19!45;CL:0002057!4.77e-18!42;CL:0002009!1.60e-14!65;CL:0000557!3.28e-14!71;CL:0002194!6.10e-14!63;CL:0000576!6.10e-14!63;CL:0000040!6.10e-14!63;CL:0000559!6.10e-14!63;CL:0000839!1.38e-13!70;CL:0000766!1.14e-11!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.69e-20;33!CL:0002057;9.69e-20;33!CL:0000473;2.27e-14;39!CL:0000234;2.27e-14;39!CL:0000576;9.34e-14;48!CL:0000766;6.84e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.51e-22,42;CL:0002057,1.51e-22,42;CL:0000473,9.66e-20,48;CL:0000234,9.66e-20,48;CL:0000557,4.18e-17,67;CL:0002009,1.26e-16,61;CL:0002194,7.57e-16,59;CL:0000576,7.57e-16,59;CL:0000040,7.57e-16,59;CL:0000559,7.57e-16,59;CL:0000839,7.80e-16,66;CL:0000766,8.84e-14,72;CL:0000763,9.36e-08,108;CL:0000049,9.36e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.99e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!3.34e-15!511;UBERON:0005743!2.51e-12!86;UBERON:0001017!6.53e-12!82;UBERON:0002371!8.08e-12!80;UBERON:0001049!2.68e-11!57;UBERON:0005068!2.68e-11!57;UBERON:0006241!2.68e-11!57;UBERON:0007135!2.68e-11!57;UBERON:0001474!2.98e-11!86;UBERON:0000955!6.16e-11!69;UBERON:0006238!6.16e-11!69;UBERON:0000922!1.11e-10!612;UBERON:0000073!1.16e-10!94;UBERON:0001016!1.16e-10!94;UBERON:0002050!5.45e-10!605;UBERON:0005423!5.45e-10!605;UBERON:0000923!5.97e-10!604;UBERON:0005291!5.97e-10!604;UBERON:0006598!5.97e-10!604;UBERON:0002532!5.97e-10!604;UBERON:0002405!6.69e-10!115;UBERON:0003080!1.17e-09!42;UBERON:0004765!2.75e-09!101;UBERON:0001434!2.75e-09!101;UBERON:0002780!2.86e-09!41;UBERON:0001890!2.86e-09!41;UBERON:0006240!2.86e-09!41;UBERON:0002616!5.52e-09!59;UBERON:0007023!6.53e-09!115;UBERON:0002390!1.09e-08!102;UBERON:0003061!1.09e-08!102;UBERON:0002346!1.51e-08!90;UBERON:0003075!2.88e-08!86;UBERON:0007284!2.88e-08!86;UBERON:0002020!3.61e-08!34;UBERON:0003528!3.61e-08!34;UBERON:0002791!1.10e-07!33;UBERON:0001893!1.16e-07!34;UBERON:0000467!1.82e-07!625;UBERON:0003056!2.36e-07!61;UBERON:0000480!2.69e-07!626;UBERON:0001869!5.67e-07!32;UBERON:0000468!7.81e-07!659;UBERON:0002193!8.83e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;8.05e-08;34!UBERON:0002020;8.05e-08;34!UBERON:0002780;1.51e-07;41!UBERON:0001890;1.51e-07;41!UBERON:0002791;2.01e-07;32!UBERON:0001893;9.94e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.45e-15,76;UBERON:0001474,2.11e-14,82;UBERON:0004765,2.11e-12,90;UBERON:0002405,1.81e-11,93;UBERON:0001434,1.60e-10,100;UBERON:0002390,4.79e-10,98;UBERON:0003061,4.79e-10,98;UBERON:0001049,2.27e-09,56;UBERON:0005068,2.27e-09,56;UBERON:0006241,2.27e-09,56;UBERON:0007135,2.27e-09,56;UBERON:0003528,5.15e-09,34;UBERON:0002020,5.15e-09,34;UBERON:0002780,6.59e-09,41;UBERON:0001890,6.59e-09,41;UBERON:0003080,6.59e-09,41;UBERON:0006240,6.59e-09,41;UBERON:0001017,1.18e-08,81;UBERON:0000073,1.73e-08,53;UBERON:0002616,1.73e-08,53;UBERON:0000955,2.73e-08,68;UBERON:0006238,2.73e-08,68;UBERON:0002791,5.16e-08,32;UBERON:0001893,6.16e-08,34;UBERON:0011216,9.09e-08,223;UBERON:0002193,1.06e-07,108;UBERON:0001016,3.79e-07,89;UBERON:0001869,4.57e-07,32 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0.737201809504527,4.88460817580699,0,0,0,0,0,0,0,0,0.61560529038394,0.408001382488506,0.313454721478088,1.14494394852423,2.46373965131192,1.63205431473244,0.382067028739756,0.164201178899891,0.472264687882075,0.786728553697808,1.15148819429164,0.619264493264304,0,0,0,3.17615522379237,6.96629239188365,1.17440175733939,0.553995408531877,0,0.217010870715852,0,0,0,4.65274364094607,1.88937971844405,39.2986179124262,5.57829688573643,2.05583944010913,58.8442104700697,12.0830804775303,3.58624989140741,108.781825748749,9.3081333798887,4.51839278508678,78.5473622247182,4.32957380947991,2.45615535052061,112.361742222542,8.57034898638527,5.45579346029359,122.752728153416,7.58657990429447,1.39624560335142,52.8518690660541,5.5139755339431,2.26954089876456,97.1602708433097,15.0749199154046,3.65038042894141,48.433112369241,9.6863920421339,4.05105399586321,156.332419395797,3.38008458099107,1.70083439972035,3.77385561915077,0.673971786878971,1.35159203557356,0.16072558669708,7.12531859353121,4.57508357557907,5.84525292046829,0,1.63841583378639,0,0.853460445133014,0.400395987036012,0,1.32208974556972,1.90810750907073,0.569212969109448,0,0,2.64342657158052,0,0.790152254325231,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0.486634870302636,0.283604451492204,0.221729397462564,0.263504357079378,1.0478326039817,0,0,0.649094787309367,0.522389211897802,0,0,0,0.371457501329565,0.198762407366705,0,0,0,0,0.550236083880135,0.208994966536811,0.516833518338658,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,1.45650098894541,0.573673241497627,0,0,0,0.74000264525148,0.311211035399766,0.269421344139376,0.653847612453835,0.302714855289863,1.15235184896,0.234321431833797,0.312160076830321,0,0.149448680551801,0,0.161872944368132,0,1.22492502752936,0.368502951935304,0.103325781175765,0,0,0,0,0.505008341862199,0.500474079487857,0.554128230968366,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0.0974370051611986,0.252433774244115,0,0.484938170456436,0.355009592516614,0,0,0.386521706326594,0.272746120590835,1.43402297694502,0.487894824518382,0.397589304964456,0.232387885739037,0.414644220061482,1.26160425437814,0,0,0,1.38134921352481,0,0,0.946454400318751,2.02301628093722,2.16909926895134,1.10293972732394,1.08939722046203,1.18635309555548,0.808987848960987,0.98110732562673,0.769494313892781,0,0,0,0,10.1404027857465,1.96565443335525,1.77236972004421,0,1.96781501668982,0.343135620597051,0.109750285408626,0,0,0.185176890317059,0.325808305310325,0,0,0.927443239800615,0.117408694235822,0.144366447761074,0,0,0,0,0.246217006087397,0.702012795417713,2.0808362720422,4.68669169933885,0.503946384596579,0.992425680696705,0.626909658919938,1.45316969256981,3.06706143332169,0,0,11.6103744702832,5.6206781832615,14.2653949771809,1.77794104018073,2.67391897890794,2.34434894420094,0,1.43958489784653,1.20137223137567,1.42913216315289,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.57191197463259,0,0.823240336780769,0.325736184293735,0,0,0,0,0.499864955910285,0,1.00451418286425,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0.256686072559497,4.06551398755941,0,3.09315525111078,0.670065061337395,1.91381625495949,0,0,0,0,0,0,0,0,0,0.35142424497814,0,0,0,0,0,0.955719759148911,0.195801157462741,0.343143423810856,0.206768026122887,0.431428401637234,0.106727557803444,1.81876542867756,0,0,0,0.153461973288062,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.164254312027618,1.55776328755086,0.581051892299796,3.86750238693191,0.601519410909855,0,0.229628896329213,0.364182336013434,0.131124414959424,1.35359883872224,0.385076685522074,0,0,0.527758144464379,0,0.340187410553031,0,0,0.270946437543853,0,1.27438136522519,2.49322802678617,0,0,0.522870902049801,1.53870075069834,0.328014645699706,0.650756789328606,20.6082023295445,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0.170453254832202,0.801288320820636,0.165284915360978,0,2.55225424989168,0.2023155617111,0,0.31481234683064,0.6970372701606,0,0,0,1.66791797193528,0.429374660225974,0,0,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0.274537029736055,0,1.61745985258653,3.17020642346017,0.421258456238981,0.48763373908959,0.487426979262569,0,0,0,0,0.551365343546124,0.66343897524122,0.876901770507525,1.15755106853338,0,0.608731130888112,0,0.845086807596724,0,0,0.7133421029625,0,0,0,1.13841952129715,1.04980416073495,0.288666338176536,0,1.08890984861323,23.3476625926412,0.86101074534246,0,0,0.459446800413919,0.507447609232169,0,0,0,0.822724546172388,0,0.540031437238115,0.79312517629427,0,0,0,13.5636317841775,0.144269212976445,0.355709216742071,0,0,0.5745161103971,0,3.89546328329467,0.842391534340376,0.456469358066384,0,0,0,0.1605880751037,1.21079824314629,7.23938604073555,0,3.07240764308458,3.13146551049382,5.8397199599168,0,0,2.46174797895425,0,0,0,2.43282702530686,0.293016358543788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| ||
|short_description=p1@LOC100130522 | |||
}} | }} |
Latest revision as of 20:12, 24 September 2015
Short description: | p1@LOC100130522 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC100130522_5end |
Coexpression cluster: | C274_CD14_Mast_immature_Basophils_mature_vagina_Hepatocyte |
Association with transcript: | 116bp_to_ENST00000424835, NR_028339, NR_028340, uc002lnx.2, uc010xfn.1, uc010xfo.1_5end |
EntrezGene: | LOC100130522 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.51e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.51e-22 | 42 |
defensive cell | 9.66e-20 | 48 |
phagocyte | 9.66e-20 | 48 |
granulocyte monocyte progenitor cell | 4.18e-17 | 67 |
macrophage dendritic cell progenitor | 1.26e-16 | 61 |
monopoietic cell | 7.57e-16 | 59 |
monocyte | 7.57e-16 | 59 |
monoblast | 7.57e-16 | 59 |
promonocyte | 7.57e-16 | 59 |
myeloid lineage restricted progenitor cell | 7.80e-16 | 66 |
myeloid leukocyte | 8.84e-14 | 72 |
myeloid cell | 9.36e-08 | 108 |
common myeloid progenitor | 9.36e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.45e-15 | 76 |
bone element | 2.11e-14 | 82 |
skeletal element | 2.11e-12 | 90 |
immune system | 1.81e-11 | 93 |
skeletal system | 1.60e-10 | 100 |
hematopoietic system | 4.79e-10 | 98 |
blood island | 4.79e-10 | 98 |
neural tube | 2.27e-09 | 56 |
neural rod | 2.27e-09 | 56 |
future spinal cord | 2.27e-09 | 56 |
neural keel | 2.27e-09 | 56 |
brain grey matter | 5.15e-09 | 34 |
gray matter | 5.15e-09 | 34 |
regional part of forebrain | 6.59e-09 | 41 |
forebrain | 6.59e-09 | 41 |
anterior neural tube | 6.59e-09 | 41 |
future forebrain | 6.59e-09 | 41 |
central nervous system | 1.18e-08 | 81 |
regional part of nervous system | 1.73e-08 | 53 |
regional part of brain | 1.73e-08 | 53 |
brain | 2.73e-08 | 68 |
future brain | 2.73e-08 | 68 |
regional part of telencephalon | 5.16e-08 | 32 |
telencephalon | 6.16e-08 | 34 |
organ system subdivision | 9.09e-08 | 223 |
hemolymphoid system | 1.06e-07 | 108 |
nervous system | 3.79e-07 | 89 |
cerebral hemisphere | 4.57e-07 | 32 |