FFCP PHASE1:Hg19::chr19:822044..822085,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79948 | |EntrezGene=79948 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=38319 | |HGNC=38319 | ||
|TSSclassifier=strong | |||
|UniProt=Q6T4P5 | |UniProt=Q6T4P5 | ||
|association_with_transcript=-77bp_to_ENST00000519502,uc002lpy.1_5end | |association_with_transcript=-77bp_to_ENST00000519502,uc002lpy.1_5end | ||
|cluster_id=chr19:822044..822085,- | |||
|coexpression_cluster_id=C1122 | |coexpression_cluster_id=C1122 | ||
|description=CAGE_peak_2_at_MIR3187_5end | |description=CAGE_peak_2_at_MIR3187_5end | ||
|id=chr19:822044..822085,- | |id=chr19:822044..822085,- | ||
|ontology_enrichment_celltype=CL:0002319!4.41e-09!25;CL:0000047!5.37e-07!8 | |ontology_enrichment_celltype=CL:0002319!4.41e-09!25;CL:0000047!5.37e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;6.16e-08;6!CL:0000404;6.16e-08;6!CL:0002319;6.48e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.15e-09,8;CL:0000540,6.14e-08,6;CL:0000031,6.14e-08,6;CL:0000404,6.14e-08,6;CL:0002319,7.07e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000031;6.16e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!8.08e-10!22;DOID:2994!8.08e-10!22;DOID:8692!5.64e-09!31 | |ontology_enrichment_disease=DOID:3095!8.08e-10!22;DOID:2994!8.08e-10!22;DOID:8692!5.64e-09!31 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.51e-12;22!DOID:2994;7.51e-12;22!DOID:8692;1.56e-11;31!DOID:171;1.84e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,6.81e-12,22;DOID:2994,6.81e-12,22;DOID:8692,1.22e-11,31;DOID:171,1.63e-08,10;DOID:1240,6.92e-08,39;DOID:162,6.88e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.22e-25!94;UBERON:0001016!1.22e-25!94;UBERON:0005743!8.08e-25!86;UBERON:0001017!6.45e-24!82;UBERON:0000955!1.84e-18!69;UBERON:0006238!1.84e-18!69;UBERON:0002346!3.67e-17!90;UBERON:0003075!4.42e-15!86;UBERON:0007284!4.42e-15!86;UBERON:0001869!7.32e-15!32;UBERON:0002020!8.43e-15!34;UBERON:0003528!8.43e-15!34;UBERON:0001893!9.68e-15!34;UBERON:0002616!1.22e-14!59;UBERON:0003056!1.46e-14!61;UBERON:0002791!3.19e-14!33;UBERON:0002780!5.46e-14!41;UBERON:0001890!5.46e-14!41;UBERON:0006240!5.46e-14!41;UBERON:0001049!6.38e-14!57;UBERON:0005068!6.38e-14!57;UBERON:0006241!6.38e-14!57;UBERON:0007135!6.38e-14!57;UBERON:0000924!1.30e-13!173;UBERON:0006601!1.30e-13!173;UBERON:0000956!2.36e-13!25;UBERON:0000203!2.36e-13!25;UBERON:0003080!2.68e-13!42;UBERON:0002619!3.78e-13!22;UBERON:0001950!4.77e-12!20;UBERON:0004121!4.89e-12!169;UBERON:0000033!6.28e-11!123;UBERON:0000153!2.15e-10!129;UBERON:0007811!2.15e-10!129 | |ontology_enrichment_uberon=UBERON:0000073!1.22e-25!94;UBERON:0001016!1.22e-25!94;UBERON:0005743!8.08e-25!86;UBERON:0001017!6.45e-24!82;UBERON:0000955!1.84e-18!69;UBERON:0006238!1.84e-18!69;UBERON:0002346!3.67e-17!90;UBERON:0003075!4.42e-15!86;UBERON:0007284!4.42e-15!86;UBERON:0001869!7.32e-15!32;UBERON:0002020!8.43e-15!34;UBERON:0003528!8.43e-15!34;UBERON:0001893!9.68e-15!34;UBERON:0002616!1.22e-14!59;UBERON:0003056!1.46e-14!61;UBERON:0002791!3.19e-14!33;UBERON:0002780!5.46e-14!41;UBERON:0001890!5.46e-14!41;UBERON:0006240!5.46e-14!41;UBERON:0001049!6.38e-14!57;UBERON:0005068!6.38e-14!57;UBERON:0006241!6.38e-14!57;UBERON:0007135!6.38e-14!57;UBERON:0000924!1.30e-13!173;UBERON:0006601!1.30e-13!173;UBERON:0000956!2.36e-13!25;UBERON:0000203!2.36e-13!25;UBERON:0003080!2.68e-13!42;UBERON:0002619!3.78e-13!22;UBERON:0001950!4.77e-12!20;UBERON:0004121!4.89e-12!169;UBERON:0000033!6.28e-11!123;UBERON:0000153!2.15e-10!129;UBERON:0007811!2.15e-10!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.49e-17;22!UBERON:0000956;1.13e-15;25!UBERON:0000203;1.13e-15;25!UBERON:0001869;1.26e-15;32!UBERON:0001950;1.60e-15;20!UBERON:0003528;1.14e-14;34!UBERON:0002020;1.14e-14;34!UBERON:0002791;1.57e-14;32!UBERON:0001893;7.14e-14;34!UBERON:0002780;9.45e-10;41!UBERON:0001890;9.45e-10;41!UBERON:0000922;1.09e-08;49!UBERON:0000955;1.62e-08;68!UBERON:0001017;3.44e-08;75!UBERON:0001871;9.78e-08;6!UBERON:0001016;1.16e-07;83!UBERON:0000073;1.63e-07;53!UBERON:0002616;1.63e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.94e-24,89;UBERON:0001017,1.03e-22,81;UBERON:0001869,1.03e-17,32;UBERON:0002619,1.46e-17,22;UBERON:0003528,4.27e-17,34;UBERON:0002020,4.27e-17,34;UBERON:0000955,1.95e-16,68;UBERON:0006238,1.95e-16,68;UBERON:0002791,3.58e-16,32;UBERON:0001893,3.64e-16,34;UBERON:0000956,5.00e-16,25;UBERON:0000203,5.00e-16,25;UBERON:0001950,6.28e-16,20;UBERON:0002346,4.40e-14,86;UBERON:0004121,2.43e-13,171;UBERON:0000924,2.43e-13,171;UBERON:0006601,2.43e-13,171;UBERON:0003056,4.70e-13,61;UBERON:0002780,6.29e-13,41;UBERON:0001890,6.29e-13,41;UBERON:0003080,6.29e-13,41;UBERON:0006240,6.29e-13,41;UBERON:0000073,3.14e-12,53;UBERON:0002616,3.14e-12,53;UBERON:0001049,4.27e-12,56;UBERON:0005068,4.27e-12,56;UBERON:0006241,4.27e-12,56;UBERON:0007135,4.27e-12,56;UBERON:0003075,1.26e-11,82;UBERON:0007284,1.26e-11,82;UBERON:0011216,8.63e-09,223;UBERON:0010371,2.99e-08,104;UBERON:0001871,8.91e-08,6 | |||
|phase1_expression=0.908391896352783,0,0,0,0.893922188854576,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0.487932798790507,2.46242116153576,0.408001382488506,7.20945859399602,1.43117993565528,0.136874425072884,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,9.68881449804996,0,0.401088894940283,0,2.46307021663917,0.647787332037959,0,0,0.377875943688809,0,0,0,0.309706370895104,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,6.05783394982677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.722878304769133,0,0.289693037921647,0,0,1.70162670895322,2.66075276955077,2.63504357079378,1.24430121722827,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0.347140501607594,0.56530794192401,0,0,0,0.258416759169329,0.71153252537342,0,1.61131726843659,0.760272105718513,0.976248230192678,0,12.9622711661082,0.0892997282840798,0.22452937262617,0.225222960966644,0,0,1.64881569537367,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,1.06748995729705,0,0,0,0,2.57307626996383,2.30470369792,0.234321431833797,0,0,0,0,0,0.140450806702248,0.204154171254893,0.122834317311768,0.103325781175765,0,0,0,0.718618141816238,0,0.250237039743928,0,0.438977620880838,0,0.150238058906597,0,1.61450672119976,2.13557388818567,0.211931901159562,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0,0,0,0,0.323292113637624,2.4850671476163,1.20902517873168,0.339121184620975,0,0.272746120590835,0,7.56236978003491,6.36142887943129,5.11253348625881,8.50020651126038,8.07426722802011,4.37972830890996,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,4.41026134156626,0,0,0,0,0.245976877086227,0.343135620597051,0,0,0,0,0.325808305310325,0,0,8.23105875323045,1.6437217193015,0.144366447761074,0,0,1.58040879591855,0.858486162094873,0.492434012174795,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30788020649984,0,0.258543431515556,0,0,0,0,0,0,0.266422179016099,3.14551586047925,3.7983512377401,0.823240336780769,0,3.19852753868291,0.791951872933429,2.41151501647669,17.4306691720059,3.59902768255405,0,1.00451418286425,4.21667878966063,0,1.14861935834114,0,0.144781306667579,0,0,0,0,0,0,3.30323011489202,9.10978977003352,13.1459098172208,30.8229928215202,17.2243462946354,0,0,0,1.34960640891054,0.500170521059677,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0,0.553107505625109,0.0868836144680828,4.30762546418029,3.43143423810856,0,0,0,0,0,0,0,0,0,0.256278298511402,0.511707249066704,0.482561763430822,2.96836132889982,0,0,0.0821271560138091,1.03850885836724,0,2.77976734060731,2.40607764363942,0,0.574072240823034,0.546273504020151,2.22911505431021,0,0.0770153371044148,0,0,0.844413031143006,0,0.510281115829547,0.215915916102139,0,0.812839312631559,3.51182841698397,0,0,0,0,0,0.256450125116389,4.92021968549559,0.650756789328606,0.103041011647722,5.95201521319232,4.29049399587058,0,0,0,0,0,0,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0.0890320356467374,0.330569830721956,0,0,0.10115778085555,0,0.31481234683064,0,0,0,0,0,0,1.116475108079,0,1.90630193923825,2.81487570442467,0.855877976067841,0,0,0.539617372749944,0.823611089208164,0.589062011728432,0,0,0,1.95053495635836,0.243713489631284,0,0,0.141405431953713,0,0.551365343546124,0,0,0,0.655894752046633,0,0.30982349809975,0,0.286822704408103,0.196498082026242,0,0,0,0.329294892959902,0,1.39973888097993,0.0962221127255121,0,0,0,2.58303223602738,0,0,0.689170200620878,0,0,0,0,0,0,0,0,8.86639790358027,6.73735898684351,1.22520107990516,0,0,0,0,0,0,0,37.6561450718484,31.1684867705939,10.72702991456,36.3497358193414,35.0888267926094,0,30.993498495014,26.2339619348362,28.5316979252519,0,38.7123363028657,44.5115454705908,40.5443414359938,0,0.278406173895242,1.23087398947712,0.270455678475983,17.6528143038845,0,0,0,9.22339965296302,0,0,0,0,0,7.95318118213038,6.75213198770461,0,0,6.3337622438398,0.19924798825107,0,0,0.511343412510774,0,0,0,0,43.4836514692841,0,0,0,5.81599647657131,2.59750674853184,79.8455192004777,0,0,0,0,0,0.236387681767936,1.03423011972439,2.62444152044929,2.77799991893268,0,2.65312164975897,0,0,0,4.38770794307945,0,0,0,0,4.6112780877612,5.20594337576678,2.28159481036217,0,0,0,0,4.86638794824577,2.32696354660219,8.1214437822185,5.88187602953219,5.37029078322697,6.45162691262229,0.635746315921515,0.843992258112108,0,0.141353071433941,0,0,0.0884575645033392,1.22206028986725,0,0,0,0.404406797884062,0,1.40558667435203,0,0.19566461893209,4.61282721114776,0,2.41981432097328,44.3805504364211,0.063186579628488,0,1.24425829676697,3.32326936353593,6.95083107338548,4.08112793929393,2.38944859545918,0.853828638089378,4.2989148634073,4.85967267338367,0,0,0.34945333648406,0,0,0,0,0,8.47258816238402,1.58186518546373,0,0,4.81162049264678,0,1.44285876452761,0,1.79828648623917,1.00863292007874,19.4712213482057,0,0,1.11827282008889,0,1.76675467895698,0.627617077873999,0.203996435272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| ||
|short_description=p2@MIR3187 | |short_description=p2@MIR3187 | ||
}} | }} |
Latest revision as of 23:25, 24 September 2015
Short description: | p2@MIR3187 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MIR3187_5end |
Coexpression cluster: | C1122_granulocyte_brain_acute_biphenotypic_occipital_duodenum_myelodysplastic |
Association with transcript: | -77bp_to_ENST00000519502, uc002lpy.1_5end |
EntrezGene: | LPPR3 |
HGNC: | 38319 |
UniProt: | Q6T4P5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.15e-09 | 8 |
neuron | 6.14e-08 | 6 |
neuroblast | 6.14e-08 | 6 |
electrically signaling cell | 6.14e-08 | 6 |
neural cell | 7.07e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.94e-24 | 89 |
central nervous system | 1.03e-22 | 81 |
cerebral hemisphere | 1.03e-17 | 32 |
regional part of cerebral cortex | 1.46e-17 | 22 |
brain grey matter | 4.27e-17 | 34 |
gray matter | 4.27e-17 | 34 |
brain | 1.95e-16 | 68 |
future brain | 1.95e-16 | 68 |
regional part of telencephalon | 3.58e-16 | 32 |
telencephalon | 3.64e-16 | 34 |
cerebral cortex | 5.00e-16 | 25 |
pallium | 5.00e-16 | 25 |
neocortex | 6.28e-16 | 20 |
neurectoderm | 4.40e-14 | 86 |
ectoderm-derived structure | 2.43e-13 | 171 |
ectoderm | 2.43e-13 | 171 |
presumptive ectoderm | 2.43e-13 | 171 |
pre-chordal neural plate | 4.70e-13 | 61 |
regional part of forebrain | 6.29e-13 | 41 |
forebrain | 6.29e-13 | 41 |
anterior neural tube | 6.29e-13 | 41 |
future forebrain | 6.29e-13 | 41 |
regional part of nervous system | 3.14e-12 | 53 |
regional part of brain | 3.14e-12 | 53 |
neural tube | 4.27e-12 | 56 |
neural rod | 4.27e-12 | 56 |
future spinal cord | 4.27e-12 | 56 |
neural keel | 4.27e-12 | 56 |
neural plate | 1.26e-11 | 82 |
presumptive neural plate | 1.26e-11 | 82 |
organ system subdivision | 8.63e-09 | 223 |
ecto-epithelium | 2.99e-08 | 104 |
temporal lobe | 8.91e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.81e-12 | 22 |
germ cell cancer | 6.81e-12 | 22 |
myeloid leukemia | 1.22e-11 | 31 |
neuroectodermal tumor | 1.63e-08 | 10 |
leukemia | 6.92e-08 | 39 |
cancer | 6.88e-07 | 235 |