FFCP PHASE1:Hg19::chr5:141060389..141060439,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:141060389..141060439,-
|short_description=p3@ARAP3
|description=CAGE_peak_3_at_ARAP3_5end
|association_with_transcript=0bp_to_ENST00000504448,uc003llo.1_5e...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64411 | |EntrezGene=64411 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24097 | |HGNC=24097 | ||
|TSSclassifier=strong | |||
|UniProt=Q05CH1 | |UniProt=Q05CH1 | ||
|association_with_transcript=0bp_to_ENST00000504448,uc003llo.1_5end | |||
|cluster_id=chr5:141060389..141060439,- | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_3_at_ARAP3_5end | |||
|id=chr5:141060389..141060439,- | |||
|ontology_enrichment_celltype=CL:0002139!1.47e-24!24;CL:0000115!4.67e-22!35;CL:0000071!4.08e-19!18;CL:0002546!4.08e-19!18;CL:0002078!3.53e-18!44;CL:0000222!2.78e-13!119;CL:0000213!1.11e-10!57;CL:0000215!1.11e-10!57;CL:1000413!1.69e-10!9;CL:0000359!2.36e-10!32;CL:0002321!8.65e-10!248;CL:0000220!3.87e-09!246;CL:0002544!1.76e-07!6;CL:0002543!1.76e-07!6;CL:0005020!5.42e-07!6;CL:0002138!5.42e-07!6;CL:0005022!5.42e-07!6;CL:0000393!8.95e-07!60;CL:0000211!8.95e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.94e-52;24!CL:0000115;2.19e-44;36!CL:0000071;5.36e-40;18!CL:0002078;1.52e-25;45!CL:1000413;4.48e-21;9!CL:0000213;4.69e-18;58!CL:0000215;4.69e-18;58!CL:0002544;1.69e-14;6!CL:0002543;1.71e-14;6!CL:0002138;2.11e-13;6!CL:0000359;4.71e-12;32!CL:0002322;8.65e-10;5!CL:0002594;2.69e-09;4!CL:0002548;4.59e-09;6!CL:0002188;3.83e-08;5!CL:0002618;7.75e-08;3!CL:0002144;1.12e-07;3!CL:0002494;3.03e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.34e-52,36;CL:0002139,5.57e-52,24;CL:0002078,4.52e-40,45;CL:0000071,5.38e-40,18;CL:0002546,5.38e-40,18;CL:0000213,6.84e-29,58;CL:0000215,6.84e-29,58;CL:0000222,4.59e-27,121;CL:1000413,4.49e-21,9;CL:0002321,1.04e-18,250;CL:0002544,1.71e-14,6;CL:0002543,1.71e-14,6;CL:0005020,1.97e-13,6;CL:0002138,1.97e-13,6;CL:0005022,1.97e-13,6;CL:0000359,1.49e-12,32;CL:0002322,7.88e-10,5;CL:0002594,2.95e-09,4;CL:0002548,5.25e-09,6;CL:0000192,2.49e-08,43;CL:0000514,2.49e-08,43;CL:0002188,3.88e-08,5;CL:0002618,7.70e-08,3;CL:0002144,1.12e-07,3;CL:0000076,1.23e-07,63;CL:0000393,2.55e-07,61;CL:0000211,2.55e-07,61;CL:0002494,3.45e-07,16 | |||
|ontology_enrichment_development_v019=CL:0002546;5.36e-40;18!CL:0005022;2.11e-13;6!CL:0000222;2.08e-08;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!9.98e-37!69;UBERON:0004872!5.78e-36!84;UBERON:0001981!4.67e-34!60;UBERON:0007500!4.67e-34!60;UBERON:0004537!4.67e-34!60;UBERON:0006965!4.67e-34!60;UBERON:0000025!3.90e-33!194;UBERON:0002049!1.30e-32!79;UBERON:0007798!1.30e-32!79;UBERON:0004111!7.21e-31!241;UBERON:0001009!3.69e-30!113;UBERON:0004535!1.25e-28!110;UBERON:0003914!6.91e-28!118;UBERON:0000477!1.89e-26!286;UBERON:0001637!7.44e-24!42;UBERON:0003509!7.44e-24!42;UBERON:0004572!7.44e-24!42;UBERON:0000483!1.64e-22!309;UBERON:0000119!7.53e-22!312;UBERON:0001986!4.08e-19!18;UBERON:0004638!4.08e-19!18;UBERON:0004852!4.08e-19!18;UBERON:0004573!3.28e-16!33;UBERON:0004571!3.28e-16!33;UBERON:0000487!3.88e-14!22;UBERON:0000468!3.97e-13!659;UBERON:0007023!4.03e-13!115;UBERON:0006914!1.47e-12!25;UBERON:0000467!5.52e-12!625;UBERON:0000480!7.27e-12!626;UBERON:0000490!1.41e-11!138;UBERON:0000922!1.55e-11!612;UBERON:0000947!1.81e-11!21;UBERON:0010191!1.81e-11!21;UBERON:0007100!3.61e-11!27;UBERON:0003915!1.69e-10!9;UBERON:0004700!1.69e-10!9;UBERON:0001917!1.69e-10!9;UBERON:0003103!3.96e-10!69;UBERON:0000948!1.00e-09!24;UBERON:0005498!1.00e-09!24;UBERON:0004140!1.00e-09!24;UBERON:0009881!1.00e-09!24;UBERON:0004141!1.00e-09!24;UBERON:0003084!1.00e-09!24;UBERON:0007005!1.00e-09!24;UBERON:0004139!1.00e-09!24;UBERON:0004291!1.00e-09!24;UBERON:0000481!1.10e-09!347;UBERON:0002050!6.27e-09!605;UBERON:0005423!6.27e-09!605;UBERON:0000923!1.33e-08!604;UBERON:0005291!1.33e-08!604;UBERON:0006598!1.33e-08!604;UBERON:0002532!1.33e-08!604;UBERON:0003075!2.08e-08!86;UBERON:0007284!2.08e-08!86;UBERON:0005743!1.42e-07!86;UBERON:0002346!1.79e-07!90;UBERON:0000073!4.90e-07!94;UBERON:0001016!4.90e-07!94;UBERON:0001017!8.02e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.36e-40;18!UBERON:0001986;5.36e-40;18!UBERON:0004852;5.36e-40;18!UBERON:0000487;1.16e-31;22!UBERON:0000055;2.35e-28;65!UBERON:0006914;3.61e-27;25!UBERON:0007500;4.59e-27;56!UBERON:0001981;4.59e-27;56!UBERON:0004537;4.59e-27;56!UBERON:0001637;2.49e-21;42!UBERON:0003509;2.49e-21;42!UBERON:0004572;2.49e-21;42!UBERON:0002049;2.83e-21;75!UBERON:0007798;2.83e-21;75!UBERON:0003915;4.48e-21;9!UBERON:0004700;4.48e-21;9!UBERON:0001917;4.48e-21;9!UBERON:0000490;8.42e-20;33!UBERON:0003914;2.96e-17;74!UBERON:0004535;4.37e-14;109!UBERON:0004573;2.73e-13;33!UBERON:0004571;2.73e-13;33!UBERON:0000025;1.09e-12;93!UBERON:0001638;4.06e-12;9!UBERON:0003920;4.06e-12;9!UBERON:0004582;4.06e-12;9!UBERON:0010260;1.01e-11;9!UBERON:0001009;1.68e-11;112!UBERON:0000947;8.55e-11;21!UBERON:0010191;8.55e-11;21!UBERON:0001473;8.02e-10;8!UBERON:0004536;8.02e-10;8!UBERON:0006558;8.02e-10;8!UBERON:0001310;2.69e-09;4!UBERON:0010523;1.12e-07;3!UBERON:0001915;1.12e-07;3!UBERON:0001982;1.12e-07;3!UBERON:0002465;1.12e-07;10!UBERON:0004111;9.69e-07;130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.29e-55,68;UBERON:0002049,1.11e-48,78;UBERON:0007798,1.11e-48,78;UBERON:0007500,1.38e-47,59;UBERON:0001981,1.38e-47,59;UBERON:0004537,1.38e-47,59;UBERON:0006965,1.38e-47,59;UBERON:0004872,1.31e-46,83;UBERON:0004535,2.19e-43,109;UBERON:0001009,8.44e-42,112;UBERON:0004638,5.38e-40,18;UBERON:0001986,5.38e-40,18;UBERON:0004852,5.38e-40,18;UBERON:0003914,1.70e-37,117;UBERON:0000487,1.17e-31,22;UBERON:0001637,2.10e-28,42;UBERON:0003509,2.10e-28,42;UBERON:0004572,2.10e-28,42;UBERON:0006914,3.62e-27,25;UBERON:0000025,1.04e-23,192;UBERON:0004111,1.47e-21,240;UBERON:0003915,4.49e-21,9;UBERON:0004700,4.49e-21,9;UBERON:0001917,4.49e-21,9;UBERON:0000490,1.52e-16,148;UBERON:0003081,2.39e-15,203;UBERON:0004573,9.93e-15,33;UBERON:0004571,9.93e-15,33;UBERON:0000483,2.24e-14,306;UBERON:0000119,4.51e-14,309;UBERON:0001638,4.56e-12,9;UBERON:0003920,4.56e-12,9;UBERON:0004582,4.56e-12,9;UBERON:0010260,1.07e-11,9;UBERON:0000947,7.41e-11,21;UBERON:0010191,7.41e-11,21;UBERON:0001473,7.63e-10,8;UBERON:0004536,7.63e-10,8;UBERON:0006558,7.63e-10,8;UBERON:0001310,2.95e-09,4;UBERON:0000926,3.12e-09,315;UBERON:0004120,3.12e-09,315;UBERON:0006603,3.12e-09,315;UBERON:0007503,4.58e-09,78;UBERON:0000948,2.86e-08,24;UBERON:0005498,2.86e-08,24;UBERON:0004140,2.86e-08,24;UBERON:0009881,2.86e-08,24;UBERON:0004141,2.86e-08,24;UBERON:0003084,2.86e-08,24;UBERON:0007005,2.86e-08,24;UBERON:0004139,2.86e-08,24;UBERON:0004291,2.86e-08,24;UBERON:0002465,1.08e-07,10;UBERON:0010523,1.12e-07,3;UBERON:0001915,1.12e-07,3;UBERON:0001982,1.12e-07,3;UBERON:0007100,4.35e-07,27;UBERON:0000922,5.61e-07,592 | |||
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| ||
|short_description=p3@ARAP3 | |||
}} | }} |
Latest revision as of 05:17, 25 September 2015
Short description: | p3@ARAP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARAP3_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 0bp_to_ENST00000504448, uc003llo.1_5end |
EntrezGene: | ARAP3 |
HGNC: | 24097 |
UniProt: | Q05CH1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.34e-52 | 36 |
endothelial cell of vascular tree | 5.57e-52 | 24 |
meso-epithelial cell | 4.52e-40 | 45 |
blood vessel endothelial cell | 5.38e-40 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.38e-40 | 18 |
lining cell | 6.84e-29 | 58 |
barrier cell | 6.84e-29 | 58 |
mesodermal cell | 4.59e-27 | 121 |
endothelial cell of artery | 4.49e-21 | 9 |
embryonic cell | 1.04e-18 | 250 |
aortic endothelial cell | 1.71e-14 | 6 |
vein endothelial cell | 1.71e-14 | 6 |
lymphangioblast | 1.97e-13 | 6 |
endothelial cell of lymphatic vessel | 1.97e-13 | 6 |
vascular lymphangioblast | 1.97e-13 | 6 |
vascular associated smooth muscle cell | 1.49e-12 | 32 |
embryonic stem cell | 7.88e-10 | 5 |
smooth muscle cell of the umbilical artery | 2.95e-09 | 4 |
cardiac fibroblast | 5.25e-09 | 6 |
smooth muscle cell | 2.49e-08 | 43 |
smooth muscle myoblast | 2.49e-08 | 43 |
glomerular endothelial cell | 3.88e-08 | 5 |
endothelial cell of umbilical vein | 7.70e-08 | 3 |
capillary endothelial cell | 1.12e-07 | 3 |
squamous epithelial cell | 1.23e-07 | 63 |
electrically responsive cell | 2.55e-07 | 61 |
electrically active cell | 2.55e-07 | 61 |
cardiocyte | 3.45e-07 | 16 |