FFCP PHASE1:Hg19::chr17:46692603..46692621,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:46692603..46692621,- to FFCP PHASE1:Hg19::chr17:46692603..46692621,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3218 | |EntrezGene=3218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5119 | |HGNC=5119 | ||
|TSSclassifier=strong | |||
|UniProt=P17481 | |UniProt=P17481 | ||
|association_with_transcript=31bp_to_ENST00000239144_5end | |||
|cluster_id=chr17:46692603..46692621,- | |||
|coexpression_cluster_id=C1783 | |||
|description=CAGE_peak_6_at_HOXB8_5end | |||
|id=chr17:46692603..46692621,- | |||
|ontology_enrichment_celltype=CL:1000507!2.47e-16!12;CL:1000494!2.47e-16!12;CL:1000497!4.12e-14!18;CL:0002518!4.12e-14!18;CL:1000449!1.00e-13!16;CL:0002681!1.74e-09!13;CL:0002584!1.74e-09!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.95e-28;10!CL:1000494;9.95e-28;10!CL:1000497;1.05e-27;17!CL:0002518;1.05e-27;17!CL:1000449;1.68e-26;15!CL:0002681;1.96e-17;12!CL:0002584;1.96e-17;12!CL:0000239;7.24e-12;3!CL:1000615;7.24e-12;3!CL:0002306;7.24e-12;3!CL:1000746;7.10e-08;7!CL:1000612;7.10e-08;7!CL:0000650;1.08e-07;2!CL:1000500;1.08e-07;2!CL:1000618;1.08e-07;2!CL:1001318;1.08e-07;2!CL:0002173;1.08e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.19e-27,10;CL:1000494,1.19e-27,10;CL:1000497,1.29e-27,17;CL:0002518,1.29e-27,17;CL:1000449,2.05e-26,15;CL:0002681,2.31e-17,12;CL:0002584,2.31e-17,12;CL:0000239,7.13e-12,3;CL:1000615,7.13e-12,3;CL:0002306,7.13e-12,3;CL:1000746,7.96e-08,7;CL:1000612,7.96e-08,7;CL:0000650,1.24e-07,2;CL:1000500,1.24e-07,2;CL:1000618,1.24e-07,2;CL:1001318,1.24e-07,2;CL:0002173,1.24e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.52e-12;3!UBERON:0003057;1.52e-12;3!UBERON:0007297;1.41e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!1.57e-23!32;UBERON:0002113!4.81e-17!27;UBERON:0003918!4.81e-17!27;UBERON:0005095!4.81e-17!27;UBERON:0007687!4.81e-17!27;UBERON:0000080!1.07e-16!18;UBERON:0002120!1.07e-16!18;UBERON:0004875!1.07e-16!18;UBERON:0005721!1.07e-16!18;UBERON:0005754!1.07e-16!18;UBERON:0007297!1.07e-16!18;UBERON:0009773!2.47e-16!12;UBERON:0001231!2.47e-16!12;UBERON:0004810!2.47e-16!12;UBERON:0003887!1.88e-15!21;UBERON:0006555!2.96e-15!17;UBERON:0005103!2.96e-15!17;UBERON:0000083!2.96e-15!17;UBERON:0009201!2.96e-15!17;UBERON:0004819!2.96e-15!17;UBERON:0006553!2.96e-15!17;UBERON:0003074!2.96e-15!17;UBERON:0003060!2.96e-15!17;UBERON:0003886!6.65e-15!63;UBERON:0004876!1.35e-14!20;UBERON:0002417!4.01e-14!61;UBERON:0000916!4.01e-14!61;UBERON:0000058!4.24e-14!26;UBERON:0004211!1.00e-13!16;UBERON:0001285!1.00e-13!16;UBERON:0007684!1.00e-13!16;UBERON:0003220!1.00e-13!16;UBERON:0004208!1.00e-13!16;UBERON:0006554!7.35e-13!44;UBERON:0002553!1.55e-12!70;UBERON:0001008!1.98e-12!45;UBERON:0005177!2.77e-11!107;UBERON:0005172!2.18e-10!55;UBERON:0005173!2.18e-10!55;UBERON:0003064!2.85e-10!37;UBERON:0001225!1.74e-09!13;UBERON:0008987!1.74e-09!13;UBERON:0000464!2.27e-09!104;UBERON:0005174!2.27e-09!5;UBERON:0001137!2.27e-09!5;UBERON:0009569!6.47e-09!113;UBERON:0003586!1.56e-08!5;UBERON:0000466!4.15e-08!126;UBERON:0002100!6.83e-08!216;UBERON:0001851!2.63e-07!16;UBERON:0003103!3.39e-07!69;UBERON:0000353!9.34e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;1.73e-32;29!UBERON:0004211;9.95e-28;10!UBERON:0009773;9.95e-28;10!UBERON:0001231;9.95e-28;10!UBERON:0004810;9.95e-28;10!UBERON:0006555;1.68e-26;15!UBERON:0004819;1.68e-26;15!UBERON:0001285;1.68e-26;15!UBERON:0007684;1.68e-26;15!UBERON:0002113;2.39e-26;24!UBERON:0011143;2.39e-26;24!UBERON:0006554;2.10e-20;30!UBERON:0001008;2.10e-20;30!UBERON:0001225;1.96e-17;12!UBERON:0008987;1.96e-17;12!UBERON:0001851;1.11e-13;15!UBERON:0000353;1.11e-13;15!UBERON:0002240;1.52e-12;3!UBERON:0005174;1.52e-12;3!UBERON:0001137;1.52e-12;3!UBERON:0006947;3.10e-12;3!UBERON:0004054;3.10e-12;3!UBERON:0006853;7.24e-12;3!UBERON:0007685;7.24e-12;3!UBERON:0004134;7.24e-12;3!UBERON:0005172;2.44e-11;52!UBERON:0005173;2.44e-11;52!UBERON:0002417;1.84e-10;58!UBERON:0000916;1.84e-10;58!UBERON:0005904;2.83e-09;4!UBERON:0000074;7.10e-08;7!UBERON:0001229;7.10e-08;7!UBERON:0003567;1.08e-07;2!UBERON:0003838;1.08e-07;2!UBERON:0003586;1.08e-07;2!UBERON:0005169;1.08e-07;2!UBERON:0002321;1.08e-07;2!UBERON:0005215;1.08e-07;2!UBERON:0002303;1.08e-07;2!UBERON:0002319;1.08e-07;2!UBERON:0003103;1.91e-07;61!UBERON:0004905;6.73e-07;8!UBERON:0000982;6.73e-07;8!UBERON:0004770;6.73e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,3.83e-38,31;UBERON:0002113,5.98e-32,26;UBERON:0003918,5.98e-32,26;UBERON:0011143,5.98e-32,26;UBERON:0005095,5.98e-32,26;UBERON:0007687,5.98e-32,26;UBERON:0006555,1.08e-29,16;UBERON:0004819,1.08e-29,16;UBERON:0004810,1.19e-27,10;UBERON:0004211,2.05e-26,15;UBERON:0009773,2.05e-26,15;UBERON:0001231,2.05e-26,15;UBERON:0001285,2.05e-26,15;UBERON:0007684,2.05e-26,15;UBERON:0004208,2.05e-26,15;UBERON:0002417,4.49e-21,60;UBERON:0000916,4.49e-21,60;UBERON:0005172,1.98e-19,54;UBERON:0005173,1.98e-19,54;UBERON:0001225,2.31e-17,12;UBERON:0008987,2.31e-17,12;UBERON:0006554,6.68e-16,47;UBERON:0001008,1.72e-15,48;UBERON:0003103,9.65e-15,68;UBERON:0001851,1.26e-13,15;UBERON:0000353,1.26e-13,15;UBERON:0000080,1.87e-13,9;UBERON:0002120,1.87e-13,9;UBERON:0004875,1.87e-13,9;UBERON:0005721,1.87e-13,9;UBERON:0005754,1.87e-13,9;UBERON:0007297,1.87e-13,9;UBERON:0005177,2.76e-13,101;UBERON:0009569,1.55e-12,112;UBERON:0002240,1.61e-12,3;UBERON:0005174,1.61e-12,3;UBERON:0001137,1.61e-12,3;UBERON:0006947,2.83e-12,3;UBERON:0004054,2.83e-12,3;UBERON:0006853,7.13e-12,3;UBERON:0007685,7.13e-12,3;UBERON:0004134,7.13e-12,3;UBERON:0004876,6.82e-11,11;UBERON:0000058,6.93e-11,19;UBERON:0005103,1.18e-10,8;UBERON:0000083,1.18e-10,8;UBERON:0009201,1.18e-10,8;UBERON:0006553,1.18e-10,8;UBERON:0003074,1.18e-10,8;UBERON:0003060,1.18e-10,8;UBERON:0003887,6.24e-10,12;UBERON:0005904,2.65e-09,4;UBERON:0010532,7.96e-08,7;UBERON:0000074,7.96e-08,7;UBERON:0001229,7.96e-08,7;UBERON:0001230,7.96e-08,7;UBERON:0003220,7.96e-08,7;UBERON:0005749,7.96e-08,7;UBERON:0004199,7.96e-08,7;UBERON:0004209,7.96e-08,7;UBERON:0004198,7.96e-08,7;UBERON:0003567,1.24e-07,2;UBERON:0003838,1.24e-07,2;UBERON:0003586,1.24e-07,2;UBERON:0005169,1.24e-07,2;UBERON:0002321,1.24e-07,2;UBERON:0005215,1.24e-07,2;UBERON:0002303,1.24e-07,2;UBERON:0002319,1.24e-07,2;UBERON:0004905,8.33e-07,8;UBERON:0000982,8.33e-07,8;UBERON:0004770,8.33e-07,8 | |||
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| ||
|short_description=p6@HOXB8 | |||
}} | }} |
Latest revision as of 07:35, 25 September 2015
Short description: | p6@HOXB8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HOXB8_5end |
Coexpression cluster: | C1783_alveolar_nonsmall_ductus_spinal_seminal_epididymis_somatostatinoma |
Association with transcript: | 31bp_to_ENST00000239144_5end |
EntrezGene: | HOXB8 |
HGNC: | 5119 |
UniProt: | P17481 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.19e-27 | 10 |
nephron tubule epithelial cell | 1.19e-27 | 10 |
kidney cell | 1.29e-27 | 17 |
kidney epithelial cell | 1.29e-27 | 17 |
epithelial cell of nephron | 2.05e-26 | 15 |
kidney cortical cell | 2.31e-17 | 12 |
renal cortical epithelial cell | 2.31e-17 | 12 |
brush border epithelial cell | 7.13e-12 | 3 |
kidney cortex tubule cell | 7.13e-12 | 3 |
epithelial cell of proximal tubule | 7.13e-12 | 3 |
glomerular cell | 7.96e-08 | 7 |
kidney corpuscule cell | 7.96e-08 | 7 |
mesangial cell | 1.24e-07 | 2 |
kidney interstitial cell | 1.24e-07 | 2 |
juxtaglomerular complex cell | 1.24e-07 | 2 |
renal interstitial pericyte | 1.24e-07 | 2 |
extraglomerular mesangial cell | 1.24e-07 | 2 |