FFCP PHASE1:Mm9::chr2:65459019..65459031,+: Difference between revisions
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{{FFCP|EntrezGene=110876|HGNC=|MCL_coexpression_id=2|UniProt=B1AWN6|association_with_transcript=105bp_to_ENSMUST00000028377_5end|description=CAGE_peak_4_at_Scn2a1_5end|id=chr2:65459019..65459031,+|ontology_enrichment_celltype=CL:0000117!6.53e-19!23;CL:0000337!6.53e-19!23;CL:0000540!1.95e-11!33;CL:0000047!1.95e-11!33;CL:0000031!1.95e-11!33;CL:0000404!1.95e-11!33;CL:0000393!7.59e-09!39;CL:0000211!7.59e-09!39;CL:0002319!1.53e-07!43;CL:0000221!2.95e-07!44;CL:0000133!2.95e-07!44|ontology_enrichment_celltype_v019_2=CL:0002610,1.67e-09,3;CL:0002614,4.61e-09,3;CL:0000117,5.47e-07,23;CL:0000337,5.47e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!7.45e-33!34;UBERON:0001049!7.68e-33!52;UBERON:0005068!7.68e-33!52;UBERON:0006241!7.68e-33!52;UBERON:0007135!7.68e-33!52;UBERON:0000955!5.85e-31!50;UBERON:0006238!5.85e-31!50;UBERON:0002616!1.02e-29!49;UBERON:0001017!3.33e-29!73;UBERON:0005743!3.33e-29!73;UBERON:0000073!4.51e-28!75;UBERON:0001016!4.51e-28!75;UBERON:0000033!8.04e-28!63;UBERON:0002791!5.04e-27!29;UBERON:0003528!5.04e-27!29;UBERON:0001893!5.04e-27!29;UBERON:0002346!4.67e-26!71;UBERON:0003075!4.67e-26!71;UBERON:0007284!4.67e-26!71;UBERON:0003080!5.55e-23!40;UBERON:0003056!1.30e-22!49;UBERON:0002780!7.62e-22!39;UBERON:0001890!7.62e-22!39;UBERON:0006240!7.62e-22!39;UBERON:0004121!2.94e-21!102;UBERON:0000924!2.94e-21!102;UBERON:0006601!2.94e-21!102;UBERON:0007811!3.31e-18!86;UBERON:0000956!8.87e-18!21;UBERON:0001869!8.87e-18!21;UBERON:0000203!8.87e-18!21;UBERON:0002021!4.38e-16!10;UBERON:0000411!4.38e-16!10;UBERON:0001950!4.38e-16!10;UBERON:0002619!5.22e-16!17;UBERON:0000153!1.22e-15!94;UBERON:0002420!1.99e-10!8;UBERON:0007245!1.99e-10!8;UBERON:0010009!1.99e-10!8;UBERON:0010011!1.99e-10!8;UBERON:0000454!1.99e-10!8;UBERON:0003076!3.67e-10!12;UBERON:0003057!3.67e-10!12;UBERON:0000025!7.11e-09!114;UBERON:0002298!2.93e-08!6;UBERON:0002240!4.77e-08!6;UBERON:0005174!4.77e-08!6;UBERON:0001137!4.77e-08!6;UBERON:0004111!1.26e-07!122;UBERON:0000369!6.34e-07!5;UBERON:0002435!6.34e-07!5;UBERON:0000204!6.34e-07!5;UBERON:0010082!6.34e-07!5;UBERON:0000064!6.52e-07!99;UBERON:0001948!6.73e-07!5;UBERON:0002315!6.73e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.95e-35,54;UBERON:0002021,1.40e-32,10;UBERON:0000411,1.40e-32,10;UBERON:0001950,1.40e-32,10;UBERON:0001049,1.09e-30,52;UBERON:0005068,1.09e-30,52;UBERON:0006241,1.09e-30,52;UBERON:0007135,1.09e-30,52;UBERON:0001017,4.84e-29,73;UBERON:0000955,1.10e-28,47;UBERON:0006238,1.10e-28,47;UBERON:0001016,3.88e-28,75;UBERON:0002020,4.12e-27,34;UBERON:0002616,1.14e-26,46;UBERON:0003528,1.56e-25,29;UBERON:0002791,1.56e-25,29;UBERON:0001893,1.56e-25,29;UBERON:0003080,3.02e-25,40;UBERON:0002346,4.53e-24,64;UBERON:0003075,4.53e-24,64;UBERON:0007284,4.53e-24,64;UBERON:0002780,2.70e-23,39;UBERON:0001890,2.70e-23,39;UBERON:0006240,2.70e-23,39;UBERON:0002619,3.91e-22,17;UBERON:0004121,3.51e-21,95;UBERON:0000924,3.51e-21,95;UBERON:0006601,3.51e-21,95;UBERON:0000956,8.82e-21,21;UBERON:0001869,8.82e-21,21;UBERON:0000203,8.82e-21,21;UBERON:0010371,1.58e-20,73;UBERON:0003056,6.99e-20,49;UBERON:0010314,2.57e-15,92;UBERON:0002950,1.57e-11,4;UBERON:0001891,1.57e-11,4;UBERON:0009616,1.57e-11,4;UBERON:0010286,1.57e-11,4;UBERON:0000025,1.92e-11,114;UBERON:0004111,2.23e-10,122;UBERON:0004684,1.67e-09,3;UBERON:0002275,1.67e-09,3;UBERON:0002038,4.61e-09,3;UBERON:0009663,4.61e-09,3;UBERON:0009661,4.61e-09,3;UBERON:0000125,4.61e-09,3;UBERON:0002308,4.61e-09,3;UBERON:0011216,9.38e-08,194|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0,0,0,0.103689612308478,0.270011876663381,0,0.285650984403804,0.883474163806454,0,0.287536413054709,0.919218786610021,1.10115880999389,3.83062014255563,2.76491759861238,0.263772575460388,0.914876436024097,0.52091337055676,1.67509799400829,1.12552522006336,2.13917546887534,2.35702868378934,2.70506193518296,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09893115816166,2.72280718857492,0,0,0,0,1.64769703345305,5.94750783664214,0.753926112677186,3.12883776346098,3.83573185995496,2.70124457927428,4.38051410282946,0,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15434922846191,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,2.24924921495265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.0827665835536,10.1271552031579,11.4579102687879,9.96748457593388,8.22099023724771,8.3093328712867,4.05013500139084,12.6089936902782,16.7662691324156,9.83744592328458,0,0,0,0,0,0,0,0,0,0,0.760437899670719,0,0.468207537349412,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0,0.354951612318675,0,0.145346416632329,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0,0,0,0.29551344712669,0.409231043169689,0.154936841185966,0,0.249810577937946,0,0,0,0,0|short_description=p4@Scn2a1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=110876 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=B1AWN6 | |||
|association_with_transcript=105bp_to_ENSMUST00000028377_5end | |||
|cluster_id=chr2:65459019..65459031,+ | |||
|description=CAGE_peak_4_at_Scn2a1_5end | |||
|id=chr2:65459019..65459031,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.53e-19!23;CL:0000337!6.53e-19!23;CL:0000540!1.95e-11!33;CL:0000047!1.95e-11!33;CL:0000031!1.95e-11!33;CL:0000404!1.95e-11!33;CL:0000393!7.59e-09!39;CL:0000211!7.59e-09!39;CL:0002319!1.53e-07!43;CL:0000221!2.95e-07!44;CL:0000133!2.95e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.67e-09,3;CL:0002614,4.61e-09,3;CL:0000117,5.47e-07,23;CL:0000337,5.47e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!7.45e-33!34;UBERON:0001049!7.68e-33!52;UBERON:0005068!7.68e-33!52;UBERON:0006241!7.68e-33!52;UBERON:0007135!7.68e-33!52;UBERON:0000955!5.85e-31!50;UBERON:0006238!5.85e-31!50;UBERON:0002616!1.02e-29!49;UBERON:0001017!3.33e-29!73;UBERON:0005743!3.33e-29!73;UBERON:0000073!4.51e-28!75;UBERON:0001016!4.51e-28!75;UBERON:0000033!8.04e-28!63;UBERON:0002791!5.04e-27!29;UBERON:0003528!5.04e-27!29;UBERON:0001893!5.04e-27!29;UBERON:0002346!4.67e-26!71;UBERON:0003075!4.67e-26!71;UBERON:0007284!4.67e-26!71;UBERON:0003080!5.55e-23!40;UBERON:0003056!1.30e-22!49;UBERON:0002780!7.62e-22!39;UBERON:0001890!7.62e-22!39;UBERON:0006240!7.62e-22!39;UBERON:0004121!2.94e-21!102;UBERON:0000924!2.94e-21!102;UBERON:0006601!2.94e-21!102;UBERON:0007811!3.31e-18!86;UBERON:0000956!8.87e-18!21;UBERON:0001869!8.87e-18!21;UBERON:0000203!8.87e-18!21;UBERON:0002021!4.38e-16!10;UBERON:0000411!4.38e-16!10;UBERON:0001950!4.38e-16!10;UBERON:0002619!5.22e-16!17;UBERON:0000153!1.22e-15!94;UBERON:0002420!1.99e-10!8;UBERON:0007245!1.99e-10!8;UBERON:0010009!1.99e-10!8;UBERON:0010011!1.99e-10!8;UBERON:0000454!1.99e-10!8;UBERON:0003076!3.67e-10!12;UBERON:0003057!3.67e-10!12;UBERON:0000025!7.11e-09!114;UBERON:0002298!2.93e-08!6;UBERON:0002240!4.77e-08!6;UBERON:0005174!4.77e-08!6;UBERON:0001137!4.77e-08!6;UBERON:0004111!1.26e-07!122;UBERON:0000369!6.34e-07!5;UBERON:0002435!6.34e-07!5;UBERON:0000204!6.34e-07!5;UBERON:0010082!6.34e-07!5;UBERON:0000064!6.52e-07!99;UBERON:0001948!6.73e-07!5;UBERON:0002315!6.73e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,4.95e-35,54;UBERON:0002021,1.40e-32,10;UBERON:0000411,1.40e-32,10;UBERON:0001950,1.40e-32,10;UBERON:0001049,1.09e-30,52;UBERON:0005068,1.09e-30,52;UBERON:0006241,1.09e-30,52;UBERON:0007135,1.09e-30,52;UBERON:0001017,4.84e-29,73;UBERON:0000955,1.10e-28,47;UBERON:0006238,1.10e-28,47;UBERON:0001016,3.88e-28,75;UBERON:0002020,4.12e-27,34;UBERON:0002616,1.14e-26,46;UBERON:0003528,1.56e-25,29;UBERON:0002791,1.56e-25,29;UBERON:0001893,1.56e-25,29;UBERON:0003080,3.02e-25,40;UBERON:0002346,4.53e-24,64;UBERON:0003075,4.53e-24,64;UBERON:0007284,4.53e-24,64;UBERON:0002780,2.70e-23,39;UBERON:0001890,2.70e-23,39;UBERON:0006240,2.70e-23,39;UBERON:0002619,3.91e-22,17;UBERON:0004121,3.51e-21,95;UBERON:0000924,3.51e-21,95;UBERON:0006601,3.51e-21,95;UBERON:0000956,8.82e-21,21;UBERON:0001869,8.82e-21,21;UBERON:0000203,8.82e-21,21;UBERON:0010371,1.58e-20,73;UBERON:0003056,6.99e-20,49;UBERON:0010314,2.57e-15,92;UBERON:0002950,1.57e-11,4;UBERON:0001891,1.57e-11,4;UBERON:0009616,1.57e-11,4;UBERON:0010286,1.57e-11,4;UBERON:0000025,1.92e-11,114;UBERON:0004111,2.23e-10,122;UBERON:0004684,1.67e-09,3;UBERON:0002275,1.67e-09,3;UBERON:0002038,4.61e-09,3;UBERON:0009663,4.61e-09,3;UBERON:0009661,4.61e-09,3;UBERON:0000125,4.61e-09,3;UBERON:0002308,4.61e-09,3;UBERON:0011216,9.38e-08,194 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0.528990979272033,0,0,0,0,0,0,0,0,0.103689612308478,0.270011876663381,0,0.285650984403804,0.883474163806454,0,0.287536413054709,0.919218786610021,1.10115880999389,3.83062014255563,2.76491759861238,0.263772575460388,0.914876436024097,0.52091337055676,1.67509799400829,1.12552522006336,2.13917546887534,2.35702868378934,2.70506193518296,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09893115816166,2.72280718857492,0,0,0,0,1.64769703345305,5.94750783664214,0.753926112677186,3.12883776346098,3.83573185995496,2.70124457927428,4.38051410282946,0,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.15434922846191,0.617427674275707,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.586058432961016,0,0,0,0,0,0,0,0,0,0,0,2.24924921495265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29797711407357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.0827665835536,10.1271552031579,11.4579102687879,9.96748457593388,8.22099023724771,8.3093328712867,4.05013500139084,12.6089936902782,16.7662691324156,9.83744592328458,0,0,0,0,0,0,0,0,0,0,0.760437899670719,0,0.468207537349412,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0.412085900803307,0.147198920134397,0,0.354951612318675,0,0.145346416632329,0.0941093804153306,0.0846146078916765,0.182927972872773,0,0,0,0,0.29551344712669,0.409231043169689,0.154936841185966,0,0.249810577937946,0,0,0,0,0 | |||
|short_description=p4@Scn2a1 | |||
}} |
Latest revision as of 20:46, 26 September 2015
Short description: | p4@Scn2a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Scn2a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 105bp_to_ENSMUST00000028377_5end |
EntrezGene: | Scn2a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.67e-09 | 3 |
neuron of the substantia nigra | 4.61e-09 | 3 |
CNS neuron (sensu Vertebrata) | 5.47e-07 | 23 |
neuroblast (sensu Vertebrata) | 5.47e-07 | 23 |