FF:10029-101E2: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005452 | |DRA_sample_Accession=CAGE@SAMD00005452 | ||
|accession_numbers=CAGE;DRX008753;DRR009625;DRZ001050;DRZ002435 | |accession_numbers=CAGE;DRX008753;DRR009625;DRZ001050;DRZ002435;DRZ012400;DRZ013785 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
Line 54: | Line 54: | ||
|microRNAs= | |microRNAs= | ||
|microRNAs_nn= | |microRNAs_nn= | ||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/ | |microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10029 | ||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/ | |microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10029 | ||
|name=trachea, adult, pool1 | |name=trachea, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 63: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0.373412607229399,0.0300822291072195,0,0,0,0,0.0163679317855291,0.084635829807314,0.0364134127333904,-0.282403560576942,0,0.0300822291072195,0,0.0582150559773052,0,0,0,0,0,0.0582150559773052,0.0582150559773052,0,0,-0.0951079543711224,0,0,0.0136236158124397,0.13483426514757,0.133095135155278,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0291075279886526,0,0.0251643962097119,0,0.0300822291072195,0,-0.14080188081492,0,0,0,0,0,0,0,0,0.0331440083444325,0,0.0392172818654277,0,0.109541028439739,0,0.0625481761228792,0,-0.0969923612426051,0,0,0.0580936019400138,0.0582150559773052,0,0,0,0,0,0,0,0.109541028439739,0,0.0300822291072195,0,0,0.0582150559773052,0,0,0.0300822291072195,-0.00979616800487076,0.084635829807314,0,0,0,0.0300822291072195,0.0928283263730713,0.0582150559773052,0.0300822291072195,0,0.084635829807314,0.074648308343453,0.100436180868532,0,0,0.0150411145536097,0,-0.0133995214303923,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0.408916166169605,0,0,0,0,-0.0765687860337564,0.0300822291072195,0,-0.0335147101480943,0.0300822291072195,0,0 | |repeat_enrich_byfamily=0,0.373412607229399,0.0300822291072195,0,0,0,0,0.0163679317855291,0.084635829807314,0.0364134127333904,-0.282403560576942,0,0.0300822291072195,0,0.0582150559773052,0,0,0,0,0,0.0582150559773052,0.0582150559773052,0,0,-0.0951079543711224,0,0,0.0136236158124397,0.13483426514757,0.133095135155278,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0291075279886526,0,0.0251643962097119,0,0.0300822291072195,0,-0.14080188081492,0,0,0,0,0,0,0,0,0.0331440083444325,0,0.0392172818654277,0,0.109541028439739,0,0.0625481761228792,0,-0.0969923612426051,0,0,0.0580936019400138,0.0582150559773052,0,0,0,0,0,0,0,0.109541028439739,0,0.0300822291072195,0,0,0.0582150559773052,0,0,0.0300822291072195,-0.00979616800487076,0.084635829807314,0,0,0,0.0300822291072195,0.0928283263730713,0.0582150559773052,0.0300822291072195,0,0.084635829807314,0.074648308343453,0.100436180868532,0,0,0.0150411145536097,0,-0.0133995214303923,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0.408916166169605,0,0,0,0,-0.0765687860337564,0.0300822291072195,0,-0.0335147101480943,0.0300822291072195,0,0 | ||
|repeat_enrich_byname=0.0229525280852427,0,0,0.0300822291072195,-0.0133995214303923,0,0,0.084635829807314,0.0300822291072195,0.084635829807314,0.0300822291072195,0.0300822291072195,0,0,0,0,0.19890063345891,0.0526325470130479,0.278879301049608,0.158406602258915,0,0,-0.0160727673233316,0,0.155437229153111,0,0.0150411145536097,0.155437229153111,0.0300822291072195,0.133095135155278,0.0582150559773052,0,0.0273173622005461,0,0.724019165232554,0,0,0.084635829807314,0,0.0300822291072195,0.0809275771765887,0,-0.0011522569084865,-0.010129205100063,0,0.0452667557265559,0,0.0691158092086421,0.0291635393303741,0.0582150559773052,-0.0113384553540016,0.00191566148389677,0.445563454835725,0.079265231869564,0.194178856885812,0,0,0,-0.0469266755617812,0.642056382690131,0,0,0.458212499097305,0.376267166777256,0.0291075279886526,0,1.01598912386144,0.0582150559773052,0.0222546065671383,0.0692246559226648,0,-0.0355985231989643,0.0300822291072195,0,0.0300822291072195,0,0,0,0.0300822291072195,0.0300822291072195,0.084635829807314,0.438659867602542,0,0.879148415113141,-0.00979616800487076,-0.00130245284892589,0.0300822291072195,0.084635829807314,0.0300822291072195,0.36166150792053,0.0300822291072195,0.0878321596043167,0.327109769384505,0.0840456635681141,0.084635829807314,0.0518437668428626,0.0600356367805161,0.33100008870372,0.130619310814747,0.402502657901395,-0.00982418884301728,0.0495415221218044,0.256097789194627,0.159302511021407,-0.155505092822813,0.148354766813826,0.0935269444703621,0.0398630840931542,0.0423516385268395,0.482747846302619,0.0495422813337905,0.0300822291072195,0.527221546618727,0.084635829807314,0.217428843222035,0.0617507509063364,0.0582150559773052,0.279049102404899,0.166816590342209,0.21381065514493,0.018225471229688,0.0832004224132755,-0.10271766556843,0.722230183617807,0.311727363985077,0.0328602947816459,0.242944929280532,0.101850951959432,0.373412607229399,0.128943686112233,0.0282242154601197,0.395959956700196,0.0318174771958044,0.0139357152629929,0.408874241611056,0.0162915687299459,0.084635829807314,0.011456151545462,-0.0215290087256059,0.0582150559773052,0,-0.090234416855724,0.0300822291072195,0.0582150559773052,0,0.0582150559773052,0.286094482485878,-0.141344835489583,0.6299078593813,-0.123314533115806,0.0582150559773052,0.0193023491624248,0.0546994089359951,0.0344499420578397,0.0327138711133356,0.0759523092725468,0.165247950310605,0.094441790762545,0.164457068242553,0.0582150559773052,-0.0176513558706455,0.0451590944983188,0.143572256209519,0.0454351325839534,0.074648308343453,-0.0363301156506179,0.290108665543854,0.0739325139779532,0.397011209083596,0.0186700900879141,1.10186529651666,0.105176333135679,0.217480096003211,0.393488559224817,0.0397381747228669,-0.12487381389476,0.00753903137071452,0.153742971920504,0.109541028439739,0.128647439854779,0.0300822291072195,-0.205145879768658,-0.0621239043662011,0.488035265049926,0.040771785028199,0.0582150559773052,-0.0254188682699342,0.994863636003965,0.0200909408454736,0.084635829807314,0.110267081203531,0.633389815713633,-0.0921520273573341,0.313119599296761,0.433482113026232,0.0861543252354935,0,0.0195393171038308,0,0.0300822291072195,0.23415726875145,-0.0587900758924735,0,-0.171430419986149,-0.210193026115351,-0.244191009431314,-0.115971073434934,0,0,0.679690924370593,0.0221786122408942,0.373412607229399,0.262321056075652,0.0761062438598346,0.189836151534854,0.0786180115606405,0.00441642195573433,0.51351940616312,0.0830096209660034,0.196943371492943,0.0750690428821748,0.0582150559773052,-0.11190912826636,0.0531308025245439,0.0300822291072195,0.122212053090912,0,0.0300822291072195,0.0883429809359575,0.234826457397195,-0.022159886316741,0.0110396800374124,0,0,0.452683221805605,0,0,0.157451753679509,-0.0359806170344659,0.13370948379924,0.155437229153111,0.00744207904676797,0,0.084635829807314,0,0.196943371492943,0,0.0387930875596114,0.109541028439739,0.133095135155278,0.074859386567407,0.0253347265740247,0.0536685461954949,0,0,0,0,0.101469026120623,-0.11860073228741,0.0300822291072195,-0.0472268766903176,0.0300822291072195,0.0927597291301653,0.0300822291072195,0,0.0234000386505277,0,0,0,0.0291075279886526,0.000484598923641208,-0.337718636310354,0,0,0,-0.27695440160179,0,0.0260182042894488,0,0.0875681267261398,0.111945459202386,0,0,-0.232920285288335,0.0421461954218194,-0.0254723658853127,0.250362473500555,0,0.095377066246354,-0.0602534196949978,0.108257955631134,0.00748696316974407,0.0582150559773052,0.246965502471747,0,0.0119707276930152,0.11404916455445,-0.0522879938584468,0,0.0560239230787673,0,0,0,0,0.0300822291072195,0,0.0876072323826313,0.0300822291072195,0,0.0300822291072195,0,0,0.133095135155278,0,0,0,0,0,0.0784635657749115,-0.00758822685119633,0.109541028439739,0,0,0,0.0698329288338396,0.154890548513596,0,0.119007472076924,-0.066353475770029,0,0,0,0,0,0.109541028439739,0.0300822291072195,0,-0.0850261315882461,0,0,0,0,0,-0.0969923612426051,0,0.0300822291072195,0,0.0300822291072195,-0.564807121153884,0,0,0.096050475035885,0,0.00239962324243994,0,0,0,0,0,0.0300822291072195,0,0.373412607229399,0.0107216693186274,0,0,-0.0137780575957087,0.0364134127333904,0.0300822291072195,0.0300822291072195,0.00436660909893069,0,0,0.084635829807314,0,-0.0585354515518836,0,0,0,0,-0.00434334526923813,0,0,0,-0.0465813288118512,0,0.0163679317855291,0,0,0,0,0,0.0135816210661522,0,0,0,0,0,0,0,0.373412607229399,0,0,0,0.0150411145536097,0,0,0.0582150559773052,-0.095252896146694,0.0151178599529474,0.225464427502559,0.108632873719216,0,0.0251417013437627,-0.0526158367510515,0,0,0,0,0,0,0.0384712047449522,0,0,0,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0.0153585503415752,0,0,0,0,0,0,0,-0.0979578962680575,0.0300822291072195,0,0.267779298055197,0.0001771871960548,0,0.0105200005860388,0.0178354556244881,0,0.0520772460643662,0.156928514237003,0.230563780471901,0.121431234842497,0,0,0.0300822291072195,0.052440570082753,0.109541028439739,0.0582150559773052,0.0394705595642795,0,0.235144357363486,0.0582150559773052,0,0,0,0.0150411145536097,0,0,0,0.109541028439739,0,0,0,0,0,0.488542814015688,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,-0.0951079543711224,0,0.0300822291072195,0,0,0.216297846654207,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084635829807314,0,0.084635829807314,0.1950536304356,0,0,0.0300822291072195,0,0,0,0.0358002654980627,0,0,0,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0.0150411145536097,0,0,0,0.0582150559773052,0,-0.0800184682686384,0,0,0,0.732270093461054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.135760336655255,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,-0.0482220752390542,0,0.0251643962097119,0,0,0.851037319681827,0,0,0,0,0,0,0,0,0,0,0,0,0.109541028439739,-0.492288986538407,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.0300822291072195,0.042317914903657,0,0,0,0,0,0,0.0150411145536097,0,0,0,0.0441486425422623,0,0,-0.223528379181286,0,0,-0.220940049599428,0,0,0,0,0,0,0,0,0,0,0,0,-0.0312379500429069,0,0.0582150559773052,0.0300822291072195,0,0,0,0,0,0,0.0300822291072195,0.0362057875816454,0,0,0,0.234826457397195,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0.0300822291072195,0,0,0.0300822291072195,0,0,0.0300822291072195,0,0,0,0,0,0,0.0441486425422623,0.00376479594103214,-0.0765687860337564,0,0,0.0300822291072195,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0.0300822291072195,0,0,0,0.0291075279886526,0,0,0,0,0.00593575954053855,0,0,0,0,0,0,0.0150411145536097,0,0,0.0291075279886526,0,0,0.0174267540075538,0,0,0,0,0.0547705142198695,0,0,0,0,0,0.129978656952783,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0.0150411145536097,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0.0144517201695866,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0.0300822291072195,0.0150411145536097,0.0777186145765555,0,0,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0,0,0.133095135155278,0,0,0,0.0291075279886526,0,0,0,0.0777186145765555,0,0.0698116287734792,0,0,0,0,0,0,0.0150411145536097,0,0,0.0300822291072195,0.133095135155278,0.26966853029514,0,0,0,0,0.457090872838789,0,0,0,0,0.0150411145536097,0.0300822291072195,0.176685961871915,0,0,0,0,0,0,0.0272472316248795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0.109541028439739,0,0,0,0,0,0,0,0,0.084635829807314,0,0,0,0,0,0,0,0,0.0150411145536097,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0,0,0,0,0,0,0,0.0582150559773052,0,0,0,0,0,0.759617276361904,0,0.0302971343702511,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0.0150411145536097,0.0777186145765555,0,0.799853348219065,0,0,0,0,0,0,0.0547705142198695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0422685297625156,0,0,0.0291075279886526,0,0,0,0,0.0327412321561099,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0.233914968987846,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0053677444710907,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0,-0.0166754714947735,0,0,0.0300822291072195,0,0,0,0,0,0,0.286094482485878,0,0,0.0300822291072195,0.0150411145536097,0,0,0,0,0,0,0,0,0.0150411145536097,0.0291075279886526,0.0573590294572668,0,0,0,0.0756952304881327,0,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0580936019400138,0,0.127579213735124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376409847161862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0,0,-0.0208304545329338,0.0150411145536097,0,0,0,0,0,0,0,0.084635829807314,0,0.00106782337584977,0.0777186145765555,0.0150411145536097,0,0,0.0582150559773052,0.155437229153111,0,0.0160299933141075,0,0,0,0,0,0,0,0,0,0,-0.259436277725256,0,0,-0.0422874684771159,0,-0.02115225907728,-0.0393767059646388,0,0,0,0,0,0.0438764347504964,0.0582150559773052,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0.0291075279886526,0.0276807509002163,0,0,0,0,0,0,0.133095135155278,0,0,0,0,0,0,0,0,0,0,0,0.109541028439739,0,0,0,0.0291075279886526,-0.0274752864756154,0.0300822291072195,-0.0929400863019293,-0.263979553366737,0,0.00961298309835046,-0.14138257226713,0,-0.0096971610963066,-0.0477396614475454,0,0,-0.06545186665056,-0.392022691573808,0.0582150559773052,0,0,0,0,0,0,0,0,0.423182072871357,0,0,0,0,0.144110145764425,0.084635829807314,0,0,0.366323126708757,0.129534252503476,0.109541028439739,-0.202150292478509,0.0300822291072195,0,-0.0480230815450677,0,0,0,-0.0113235775662728 | |repeat_enrich_byname=0.0229525280852427,0,0,0.0300822291072195,-0.0133995214303923,0,0,0.084635829807314,0.0300822291072195,0.084635829807314,0.0300822291072195,0.0300822291072195,0,0,0,0,0.19890063345891,0.0526325470130479,0.278879301049608,0.158406602258915,0,0,-0.0160727673233316,0,0.155437229153111,0,0.0150411145536097,0.155437229153111,0.0300822291072195,0.133095135155278,0.0582150559773052,0,0.0273173622005461,0,0.724019165232554,0,0,0.084635829807314,0,0.0300822291072195,0.0809275771765887,0,-0.0011522569084865,-0.010129205100063,0,0.0452667557265559,0,0.0691158092086421,0.0291635393303741,0.0582150559773052,-0.0113384553540016,0.00191566148389677,0.445563454835725,0.079265231869564,0.194178856885812,0,0,0,-0.0469266755617812,0.642056382690131,0,0,0.458212499097305,0.376267166777256,0.0291075279886526,0,1.01598912386144,0.0582150559773052,0.0222546065671383,0.0692246559226648,0,-0.0355985231989643,0.0300822291072195,0,0.0300822291072195,0,0,0,0.0300822291072195,0.0300822291072195,0.084635829807314,0.438659867602542,0,0.879148415113141,-0.00979616800487076,-0.00130245284892589,0.0300822291072195,0.084635829807314,0.0300822291072195,0.36166150792053,0.0300822291072195,0.0878321596043167,0.327109769384505,0.0840456635681141,0.084635829807314,0.0518437668428626,0.0600356367805161,0.33100008870372,0.130619310814747,0.402502657901395,-0.00982418884301728,0.0495415221218044,0.256097789194627,0.159302511021407,-0.155505092822813,0.148354766813826,0.0935269444703621,0.0398630840931542,0.0423516385268395,0.482747846302619,0.0495422813337905,0.0300822291072195,0.527221546618727,0.084635829807314,0.217428843222035,0.0617507509063364,0.0582150559773052,0.279049102404899,0.166816590342209,0.21381065514493,0.018225471229688,0.0832004224132755,-0.10271766556843,0.722230183617807,0.311727363985077,0.0328602947816459,0.242944929280532,0.101850951959432,0.373412607229399,0.128943686112233,0.0282242154601197,0.395959956700196,0.0318174771958044,0.0139357152629929,0.408874241611056,0.0162915687299459,0.084635829807314,0.011456151545462,-0.0215290087256059,0.0582150559773052,0,-0.090234416855724,0.0300822291072195,0.0582150559773052,0,0.0582150559773052,0.286094482485878,-0.141344835489583,0.6299078593813,-0.123314533115806,0.0582150559773052,0.0193023491624248,0.0546994089359951,0.0344499420578397,0.0327138711133356,0.0759523092725468,0.165247950310605,0.094441790762545,0.164457068242553,0.0582150559773052,-0.0176513558706455,0.0451590944983188,0.143572256209519,0.0454351325839534,0.074648308343453,-0.0363301156506179,0.290108665543854,0.0739325139779532,0.397011209083596,0.0186700900879141,1.10186529651666,0.105176333135679,0.217480096003211,0.393488559224817,0.0397381747228669,-0.12487381389476,0.00753903137071452,0.153742971920504,0.109541028439739,0.128647439854779,0.0300822291072195,-0.205145879768658,-0.0621239043662011,0.488035265049926,0.040771785028199,0.0582150559773052,-0.0254188682699342,0.994863636003965,0.0200909408454736,0.084635829807314,0.110267081203531,0.633389815713633,-0.0921520273573341,0.313119599296761,0.433482113026232,0.0861543252354935,0,0.0195393171038308,0,0.0300822291072195,0.23415726875145,-0.0587900758924735,0,-0.171430419986149,-0.210193026115351,-0.244191009431314,-0.115971073434934,0,0,0.679690924370593,0.0221786122408942,0.373412607229399,0.262321056075652,0.0761062438598346,0.189836151534854,0.0786180115606405,0.00441642195573433,0.51351940616312,0.0830096209660034,0.196943371492943,0.0750690428821748,0.0582150559773052,-0.11190912826636,0.0531308025245439,0.0300822291072195,0.122212053090912,0,0.0300822291072195,0.0883429809359575,0.234826457397195,-0.022159886316741,0.0110396800374124,0,0,0.452683221805605,0,0,0.157451753679509,-0.0359806170344659,0.13370948379924,0.155437229153111,0.00744207904676797,0,0.084635829807314,0,0.196943371492943,0,0.0387930875596114,0.109541028439739,0.133095135155278,0.074859386567407,0.0253347265740247,0.0536685461954949,0,0,0,0,0.101469026120623,-0.11860073228741,0.0300822291072195,-0.0472268766903176,0.0300822291072195,0.0927597291301653,0.0300822291072195,0,0.0234000386505277,0,0,0,0.0291075279886526,0.000484598923641208,-0.337718636310354,0,0,0,-0.27695440160179,0,0.0260182042894488,0,0.0875681267261398,0.111945459202386,0,0,-0.232920285288335,0.0421461954218194,-0.0254723658853127,0.250362473500555,0,0.095377066246354,-0.0602534196949978,0.108257955631134,0.00748696316974407,0.0582150559773052,0.246965502471747,0,0.0119707276930152,0.11404916455445,-0.0522879938584468,0,0.0560239230787673,0,0,0,0,0.0300822291072195,0,0.0876072323826313,0.0300822291072195,0,0.0300822291072195,0,0,0.133095135155278,0,0,0,0,0,0.0784635657749115,-0.00758822685119633,0.109541028439739,0,0,0,0.0698329288338396,0.154890548513596,0,0.119007472076924,-0.066353475770029,0,0,0,0,0,0.109541028439739,0.0300822291072195,0,-0.0850261315882461,0,0,0,0,0,-0.0969923612426051,0,0.0300822291072195,0,0.0300822291072195,-0.564807121153884,0,0,0.096050475035885,0,0.00239962324243994,0,0,0,0,0,0.0300822291072195,0,0.373412607229399,0.0107216693186274,0,0,-0.0137780575957087,0.0364134127333904,0.0300822291072195,0.0300822291072195,0.00436660909893069,0,0,0.084635829807314,0,-0.0585354515518836,0,0,0,0,-0.00434334526923813,0,0,0,-0.0465813288118512,0,0.0163679317855291,0,0,0,0,0,0.0135816210661522,0,0,0,0,0,0,0,0.373412607229399,0,0,0,0.0150411145536097,0,0,0.0582150559773052,-0.095252896146694,0.0151178599529474,0.225464427502559,0.108632873719216,0,0.0251417013437627,-0.0526158367510515,0,0,0,0,0,0,0.0384712047449522,0,0,0,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0.0153585503415752,0,0,0,0,0,0,0,-0.0979578962680575,0.0300822291072195,0,0.267779298055197,0.0001771871960548,0,0.0105200005860388,0.0178354556244881,0,0.0520772460643662,0.156928514237003,0.230563780471901,0.121431234842497,0,0,0.0300822291072195,0.052440570082753,0.109541028439739,0.0582150559773052,0.0394705595642795,0,0.235144357363486,0.0582150559773052,0,0,0,0.0150411145536097,0,0,0,0.109541028439739,0,0,0,0,0,0.488542814015688,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,-0.0951079543711224,0,0.0300822291072195,0,0,0.216297846654207,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.084635829807314,0,0.084635829807314,0.1950536304356,0,0,0.0300822291072195,0,0,0,0.0358002654980627,0,0,0,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0.0150411145536097,0,0,0,0.0582150559773052,0,-0.0800184682686384,0,0,0,0.732270093461054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.135760336655255,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,-0.0482220752390542,0,0.0251643962097119,0,0,0.851037319681827,0,0,0,0,0,0,0,0,0,0,0,0,0.109541028439739,-0.492288986538407,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.0300822291072195,0.042317914903657,0,0,0,0,0,0,0.0150411145536097,0,0,0,0.0441486425422623,0,0,-0.223528379181286,0,0,-0.220940049599428,0,0,0,0,0,0,0,0,0,0,0,0,-0.0312379500429069,0,0.0582150559773052,0.0300822291072195,0,0,0,0,0,0,0.0300822291072195,0.0362057875816454,0,0,0,0.234826457397195,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0.0300822291072195,0,0,0.0300822291072195,0,0,0.0300822291072195,0,0,0,0,0,0,0.0441486425422623,0.00376479594103214,-0.0765687860337564,0,0,0.0300822291072195,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0.0300822291072195,0,0,0,0.0291075279886526,0,0,0,0,0.00593575954053855,0,0,0,0,0,0,0.0150411145536097,0,0,0.0291075279886526,0,0,0.0174267540075538,0,0,0,0,0.0547705142198695,0,0,0,0,0,0.129978656952783,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0.0150411145536097,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0.0144517201695866,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0.0300822291072195,0.0150411145536097,0.0777186145765555,0,0,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0,0,0.133095135155278,0,0,0,0.0291075279886526,0,0,0,0.0777186145765555,0,0.0698116287734792,0,0,0,0,0,0,0.0150411145536097,0,0,0.0300822291072195,0.133095135155278,0.26966853029514,0,0,0,0,0.457090872838789,0,0,0,0,0.0150411145536097,0.0300822291072195,0.176685961871915,0,0,0,0,0,0,0.0272472316248795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0.109541028439739,0,0,0,0,0,0,0,0,0.084635829807314,0,0,0,0,0,0,0,0,0.0150411145536097,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0,0,0,0,0,0,0,0.0582150559773052,0,0,0,0,0,0.759617276361904,0,0.0302971343702511,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0.0150411145536097,0.0777186145765555,0,0.799853348219065,0,0,0,0,0,0,0.0547705142198695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0422685297625156,0,0,0.0291075279886526,0,0,0,0,0.0327412321561099,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0.233914968987846,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0300822291072195,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0053677444710907,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0,-0.0166754714947735,0,0,0.0300822291072195,0,0,0,0,0,0,0.286094482485878,0,0,0.0300822291072195,0.0150411145536097,0,0,0,0,0,0,0,0,0.0150411145536097,0.0291075279886526,0.0573590294572668,0,0,0,0.0756952304881327,0,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0580936019400138,0,0.127579213735124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376409847161862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0582150559773052,0,0,-0.0208304545329338,0.0150411145536097,0,0,0,0,0,0,0,0.084635829807314,0,0.00106782337584977,0.0777186145765555,0.0150411145536097,0,0,0.0582150559773052,0.155437229153111,0,0.0160299933141075,0,0,0,0,0,0,0,0,0,0,-0.259436277725256,0,0,-0.0422874684771159,0,-0.02115225907728,-0.0393767059646388,0,0,0,0,0,0.0438764347504964,0.0582150559773052,0,0,0,0,0,0,0.0150411145536097,0,0,0,0,0.0291075279886526,0.0276807509002163,0,0,0,0,0,0,0.133095135155278,0,0,0,0,0,0,0,0,0,0,0,0.109541028439739,0,0,0,0.0291075279886526,-0.0274752864756154,0.0300822291072195,-0.0929400863019293,-0.263979553366737,0,0.00961298309835046,-0.14138257226713,0,-0.0096971610963066,-0.0477396614475454,0,0,-0.06545186665056,-0.392022691573808,0.0582150559773052,0,0,0,0,0,0,0,0,0.423182072871357,0,0,0,0,0.144110145764425,0.084635829807314,0,0,0.366323126708757,0.129534252503476,0.109541028439739,-0.202150292478509,0.0300822291072195,0,-0.0480230815450677,0,0,0,-0.0113235775662728 | ||
Line 101: | Line 101: | ||
|top_motifs=TBP:3.8077080293;RFX1:2.37245270169;RFX2..5_RFXANK_RFXAP:2.36963787248;SNAI1..3:2.21565857354;TBX4,5:2.14069014645;TFCP2:2.08731427847;FOX{D1,D2}:2.0433946192;SP1:2.00370086876;FOXA2:1.99137171029;ZEB1:1.92940159578;HBP1_HMGB_SSRP1_UBTF:1.75967509284;IRF7:1.73312524828;MYOD1:1.66249256624;TFAP4:1.65802964804;ZIC1..3:1.63457845802;FOXO1,3,4:1.59709546527;LMO2:1.57275689742;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55978540393;MAZ:1.51420181128;MTF1:1.49967085366;STAT2,4,6:1.48444088437;EP300:1.45098317389;TLX1..3_NFIC{dimer}:1.39043405118;AR:1.34771439634;SOX5:1.3358305404;PATZ1:1.31768847805;TFAP2{A,C}:1.2989960613;FOXN1:1.25996262456;TLX2:1.24243686541;NFATC1..3:1.24043116882;ZNF148:1.22569233289;GLI1..3:1.21182396803;T:1.20701192858;MEF2{A,B,C,D}:1.20689897568;POU2F1..3:1.19484366138;HMX1:1.19275847592;RBPJ:1.1806073792;POU5F1:1.16948575584;ATF6:1.14919277753;XCPE1{core}:1.12023055332;FOXQ1:1.09043563977;SRF:1.06824797074;EBF1:0.995695903412;RXRA_VDR{dimer}:0.974524735746;GTF2I:0.974063977211;ETS1,2:0.949918050147;HIC1:0.894115878504;MYFfamily:0.871038454014;NR1H4:0.846213954715;IKZF1:0.844883783115;ESR1:0.819568595343;SPZ1:0.818836757598;NKX3-2:0.801889740124;SMAD1..7,9:0.766783810633;HAND1,2:0.764669923521;FOXL1:0.74973951112;TEAD1:0.721796331326;GCM1,2:0.706530931253;ZNF423:0.702783084986;IRF1,2:0.692907946226;POU6F1:0.679423283073;GATA4:0.66688007054;FOX{F1,F2,J1}:0.665452215753;TP53:0.657408004586;SOX2:0.654837659455;MED-1{core}:0.645655690554;MZF1:0.640946066748;ELF1,2,4:0.613569051857;MTE{core}:0.545795344598;GTF2A1,2:0.526452525831;TGIF1:0.500767120225;NANOG:0.498409940057;PBX1:0.485668356154;ATF2:0.48164218781;TFAP2B:0.463634198707;PRDM1:0.441623102428;STAT1,3:0.429508404844;RREB1:0.402864279413;PAX5:0.398404376171;HES1:0.39202878834;SPIB:0.376021402408;SPI1:0.362406753126;MYBL2:0.347136971393;JUN:0.317397604675;HNF4A_NR2F1,2:0.316354437393;BPTF:0.301424673618;REST:0.300990731607;HNF1A:0.294195320425;VSX1,2:0.288800573361;HIF1A:0.282506458826;DBP:0.244835802094;FOX{I1,J2}:0.239144129852;NHLH1,2:0.215532624686;HSF1,2:0.211882316948;XBP1:0.203837685664;KLF4:0.179833694508;GFI1B:0.166024765985;EGR1..3:0.138526304822;CDC5L:0.133665364633;GATA6:0.130387466665;CEBPA,B_DDIT3:0.120295243897;FOSL2:0.120043860188;ALX4:0.114192988795;NR3C1:0.111269125462;HLF:0.0604942412936;ZNF238:0.0498894990362;ZFP161:0.035161111834;BREu{core}:0.030621847242;PAX1,9:0.0092829233693;RUNX1..3:-0.0134486829352;ESRRA:-0.0278407945714;SOX{8,9,10}:-0.0399217529977;FOXD3:-0.0522394829273;TAL1_TCF{3,4,12}:-0.073545671841;FOS_FOS{B,L1}_JUN{B,D}:-0.0860250648224;NFIL3:-0.106260216526;CUX2:-0.116680336957;ADNP_IRX_SIX_ZHX:-0.134628075401;NFE2L2:-0.145359106959;NKX2-3_NKX2-5:-0.153540817794;SOX17:-0.184911252917;DMAP1_NCOR{1,2}_SMARC:-0.189721043744;NFKB1_REL_RELA:-0.198897950402;NR5A1,2:-0.21338941882;HOX{A6,A7,B6,B7}:-0.248833122408;CRX:-0.276820081294;NKX2-1,4:-0.289155987038;SREBF1,2:-0.299627677751;NFY{A,B,C}:-0.305391658033;ATF4:-0.337491634203;ATF5_CREB3:-0.34124216137;CREB1:-0.341374975721;ZNF384:-0.356650675676;MAFB:-0.369259089152;ZNF143:-0.378401245197;NFE2:-0.388026118561;BACH2:-0.43647891343;bHLH_family:-0.472600147374;ZBTB6:-0.484487875708;PAX6:-0.520106110663;GFI1:-0.552465287348;PAX2:-0.577134067406;LEF1_TCF7_TCF7L1,2:-0.589679387844;NR6A1:-0.590561942583;HOX{A4,D4}:-0.592310741755;FOXP3:-0.596803864078;GZF1:-0.599193762289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.607801010622;NRF1:-0.630330478511;NFIX:-0.68335884466;PRRX1,2:-0.689182258687;TEF:-0.727131261139;AIRE:-0.738637594158;OCT4_SOX2{dimer}:-0.791184602334;LHX3,4:-0.80240861068;MYB:-0.80621040802;E2F1..5:-0.810550923452;HMGA1,2:-0.823456926204;RXR{A,B,G}:-0.827082177498;PITX1..3:-0.847764200897;TFDP1:-0.874422193684;PAX3,7:-0.881658866269;FOXP1:-0.882086475466;UFEwm:-0.924782280936;STAT5{A,B}:-0.942963273344;NKX3-1:-0.946912366237;NFE2L1:-0.980760091843;ELK1,4_GABP{A,B1}:-0.983547264534;POU3F1..4:-0.983693791905;ARID5B:-0.999313629574;FOXM1:-1.07948037413;IKZF2:-1.08148105464;PDX1:-1.12900470319;AHR_ARNT_ARNT2:-1.1344970984;NKX6-1,2:-1.22742019709;PPARG:-1.22868090326;NKX2-2,8:-1.26399094346;YY1:-1.28885277521;CDX1,2,4:-1.30848010781;EVI1:-1.31216066447;ALX1:-1.33984651608;NANOG{mouse}:-1.37516273585;TOPORS:-1.41687829177;ZBTB16:-1.43162500061;RORA:-1.48545648061;HOX{A5,B5}:-1.53161541473;POU1F1:-1.5734083357;EN1,2:-1.72172869482;ONECUT1,2:-1.81453302623;HOXA9_MEIS1:-1.8478928139;PAX8:-1.99482815635;PAX4:-2.16456757123 | |top_motifs=TBP:3.8077080293;RFX1:2.37245270169;RFX2..5_RFXANK_RFXAP:2.36963787248;SNAI1..3:2.21565857354;TBX4,5:2.14069014645;TFCP2:2.08731427847;FOX{D1,D2}:2.0433946192;SP1:2.00370086876;FOXA2:1.99137171029;ZEB1:1.92940159578;HBP1_HMGB_SSRP1_UBTF:1.75967509284;IRF7:1.73312524828;MYOD1:1.66249256624;TFAP4:1.65802964804;ZIC1..3:1.63457845802;FOXO1,3,4:1.59709546527;LMO2:1.57275689742;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55978540393;MAZ:1.51420181128;MTF1:1.49967085366;STAT2,4,6:1.48444088437;EP300:1.45098317389;TLX1..3_NFIC{dimer}:1.39043405118;AR:1.34771439634;SOX5:1.3358305404;PATZ1:1.31768847805;TFAP2{A,C}:1.2989960613;FOXN1:1.25996262456;TLX2:1.24243686541;NFATC1..3:1.24043116882;ZNF148:1.22569233289;GLI1..3:1.21182396803;T:1.20701192858;MEF2{A,B,C,D}:1.20689897568;POU2F1..3:1.19484366138;HMX1:1.19275847592;RBPJ:1.1806073792;POU5F1:1.16948575584;ATF6:1.14919277753;XCPE1{core}:1.12023055332;FOXQ1:1.09043563977;SRF:1.06824797074;EBF1:0.995695903412;RXRA_VDR{dimer}:0.974524735746;GTF2I:0.974063977211;ETS1,2:0.949918050147;HIC1:0.894115878504;MYFfamily:0.871038454014;NR1H4:0.846213954715;IKZF1:0.844883783115;ESR1:0.819568595343;SPZ1:0.818836757598;NKX3-2:0.801889740124;SMAD1..7,9:0.766783810633;HAND1,2:0.764669923521;FOXL1:0.74973951112;TEAD1:0.721796331326;GCM1,2:0.706530931253;ZNF423:0.702783084986;IRF1,2:0.692907946226;POU6F1:0.679423283073;GATA4:0.66688007054;FOX{F1,F2,J1}:0.665452215753;TP53:0.657408004586;SOX2:0.654837659455;MED-1{core}:0.645655690554;MZF1:0.640946066748;ELF1,2,4:0.613569051857;MTE{core}:0.545795344598;GTF2A1,2:0.526452525831;TGIF1:0.500767120225;NANOG:0.498409940057;PBX1:0.485668356154;ATF2:0.48164218781;TFAP2B:0.463634198707;PRDM1:0.441623102428;STAT1,3:0.429508404844;RREB1:0.402864279413;PAX5:0.398404376171;HES1:0.39202878834;SPIB:0.376021402408;SPI1:0.362406753126;MYBL2:0.347136971393;JUN:0.317397604675;HNF4A_NR2F1,2:0.316354437393;BPTF:0.301424673618;REST:0.300990731607;HNF1A:0.294195320425;VSX1,2:0.288800573361;HIF1A:0.282506458826;DBP:0.244835802094;FOX{I1,J2}:0.239144129852;NHLH1,2:0.215532624686;HSF1,2:0.211882316948;XBP1:0.203837685664;KLF4:0.179833694508;GFI1B:0.166024765985;EGR1..3:0.138526304822;CDC5L:0.133665364633;GATA6:0.130387466665;CEBPA,B_DDIT3:0.120295243897;FOSL2:0.120043860188;ALX4:0.114192988795;NR3C1:0.111269125462;HLF:0.0604942412936;ZNF238:0.0498894990362;ZFP161:0.035161111834;BREu{core}:0.030621847242;PAX1,9:0.0092829233693;RUNX1..3:-0.0134486829352;ESRRA:-0.0278407945714;SOX{8,9,10}:-0.0399217529977;FOXD3:-0.0522394829273;TAL1_TCF{3,4,12}:-0.073545671841;FOS_FOS{B,L1}_JUN{B,D}:-0.0860250648224;NFIL3:-0.106260216526;CUX2:-0.116680336957;ADNP_IRX_SIX_ZHX:-0.134628075401;NFE2L2:-0.145359106959;NKX2-3_NKX2-5:-0.153540817794;SOX17:-0.184911252917;DMAP1_NCOR{1,2}_SMARC:-0.189721043744;NFKB1_REL_RELA:-0.198897950402;NR5A1,2:-0.21338941882;HOX{A6,A7,B6,B7}:-0.248833122408;CRX:-0.276820081294;NKX2-1,4:-0.289155987038;SREBF1,2:-0.299627677751;NFY{A,B,C}:-0.305391658033;ATF4:-0.337491634203;ATF5_CREB3:-0.34124216137;CREB1:-0.341374975721;ZNF384:-0.356650675676;MAFB:-0.369259089152;ZNF143:-0.378401245197;NFE2:-0.388026118561;BACH2:-0.43647891343;bHLH_family:-0.472600147374;ZBTB6:-0.484487875708;PAX6:-0.520106110663;GFI1:-0.552465287348;PAX2:-0.577134067406;LEF1_TCF7_TCF7L1,2:-0.589679387844;NR6A1:-0.590561942583;HOX{A4,D4}:-0.592310741755;FOXP3:-0.596803864078;GZF1:-0.599193762289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.607801010622;NRF1:-0.630330478511;NFIX:-0.68335884466;PRRX1,2:-0.689182258687;TEF:-0.727131261139;AIRE:-0.738637594158;OCT4_SOX2{dimer}:-0.791184602334;LHX3,4:-0.80240861068;MYB:-0.80621040802;E2F1..5:-0.810550923452;HMGA1,2:-0.823456926204;RXR{A,B,G}:-0.827082177498;PITX1..3:-0.847764200897;TFDP1:-0.874422193684;PAX3,7:-0.881658866269;FOXP1:-0.882086475466;UFEwm:-0.924782280936;STAT5{A,B}:-0.942963273344;NKX3-1:-0.946912366237;NFE2L1:-0.980760091843;ELK1,4_GABP{A,B1}:-0.983547264534;POU3F1..4:-0.983693791905;ARID5B:-0.999313629574;FOXM1:-1.07948037413;IKZF2:-1.08148105464;PDX1:-1.12900470319;AHR_ARNT_ARNT2:-1.1344970984;NKX6-1,2:-1.22742019709;PPARG:-1.22868090326;NKX2-2,8:-1.26399094346;YY1:-1.28885277521;CDX1,2,4:-1.30848010781;EVI1:-1.31216066447;ALX1:-1.33984651608;NANOG{mouse}:-1.37516273585;TOPORS:-1.41687829177;ZBTB16:-1.43162500061;RORA:-1.48545648061;HOX{A5,B5}:-1.53161541473;POU1F1:-1.5734083357;EN1,2:-1.72172869482;ONECUT1,2:-1.81453302623;HOXA9_MEIS1:-1.8478928139;PAX8:-1.99482815635;PAX4:-2.16456757123 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10029-101E2;search_select_hide=table117:FF:10029-101E2 | |||
}} | }} |
Latest revision as of 12:15, 3 June 2020
Name: | trachea, adult, pool1 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs10635 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Download raw sequence, BAM & CTSS | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10635
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10635
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.156 |
10 | 10 | 0.00786 |
100 | 100 | 0.199 |
101 | 101 | 0.91 |
102 | 102 | 0.89 |
103 | 103 | 0.687 |
104 | 104 | 0.74 |
105 | 105 | 0.476 |
106 | 106 | 0.541 |
107 | 107 | 0.12 |
108 | 108 | 0.985 |
109 | 109 | 0.756 |
11 | 11 | 0.342 |
110 | 110 | 0.364 |
111 | 111 | 0.0647 |
112 | 112 | 0.399 |
113 | 113 | 0.621 |
114 | 114 | 0.139 |
115 | 115 | 0.568 |
116 | 116 | 0.205 |
117 | 117 | 0.0869 |
118 | 118 | 0.0892 |
119 | 119 | 0.374 |
12 | 12 | 0.908 |
120 | 120 | 0.328 |
121 | 121 | 0.35 |
122 | 122 | 0.421 |
123 | 123 | 0.00333 |
124 | 124 | 0.479 |
125 | 125 | 0.454 |
126 | 126 | 0.126 |
127 | 127 | 0.674 |
128 | 128 | 0.446 |
129 | 129 | 0.347 |
13 | 13 | 0.3 |
130 | 130 | 0.611 |
131 | 131 | 0.513 |
132 | 132 | 0.164 |
133 | 133 | 0.00898 |
134 | 134 | 0.0074 |
135 | 135 | 0.0408 |
136 | 136 | 0.813 |
137 | 137 | 0.787 |
138 | 138 | 0.622 |
139 | 139 | 0.47 |
14 | 14 | 0.847 |
140 | 140 | 0.207 |
141 | 141 | 0.449 |
142 | 142 | 0.994 |
143 | 143 | 0.114 |
144 | 144 | 0.145 |
145 | 145 | 0.63 |
146 | 146 | 0.0955 |
147 | 147 | 0.452 |
148 | 148 | 0.496 |
149 | 149 | 0.748 |
15 | 15 | 0.228 |
150 | 150 | 0.945 |
151 | 151 | 0.668 |
152 | 152 | 0.037 |
153 | 153 | 0.509 |
154 | 154 | 0.485 |
155 | 155 | 0.739 |
156 | 156 | 0.513 |
157 | 157 | 0.619 |
158 | 158 | 0.15 |
159 | 159 | 0.731 |
16 | 16 | 0.792 |
160 | 160 | 0.43 |
161 | 161 | 0.195 |
162 | 162 | 0.964 |
163 | 163 | 0.602 |
164 | 164 | 0.0451 |
165 | 165 | 0.27 |
166 | 166 | 0.922 |
167 | 167 | 0.023 |
168 | 168 | 0.0284 |
169 | 169 | 0.339 |
17 | 17 | 0.903 |
18 | 18 | 0.049 |
19 | 19 | 0.698 |
2 | 2 | 0.0195 |
20 | 20 | 0.147 |
21 | 21 | 0.234 |
22 | 22 | 0.402 |
23 | 23 | 0.302 |
24 | 24 | 0.568 |
25 | 25 | 0.777 |
26 | 26 | 0.325 |
27 | 27 | 0.557 |
28 | 28 | 0.959 |
29 | 29 | 0.0692 |
3 | 3 | 0.394 |
30 | 30 | 0.00597 |
31 | 31 | 0.968 |
32 | 32 | 0.975 |
33 | 33 | 0.813 |
34 | 34 | 0.406 |
35 | 35 | 0.133 |
36 | 36 | 0.0283 |
37 | 37 | 0.504 |
38 | 38 | 0.944 |
39 | 39 | 0.322 |
4 | 4 | 0.287 |
40 | 40 | 0.324 |
41 | 41 | 0.253 |
42 | 42 | 0.579 |
43 | 43 | 0.366 |
44 | 44 | 0.941 |
45 | 45 | 0.0503 |
46 | 46 | 0.326 |
47 | 47 | 0.259 |
48 | 48 | 0.498 |
49 | 49 | 0.0652 |
5 | 5 | 0.722 |
50 | 50 | 0.273 |
51 | 51 | 0.528 |
52 | 52 | 0.103 |
53 | 53 | 0.942 |
54 | 54 | 0.986 |
55 | 55 | 0.874 |
56 | 56 | 0.929 |
57 | 57 | 0.101 |
58 | 58 | 0.868 |
59 | 59 | 0.279 |
6 | 6 | 0.328 |
60 | 60 | 0.344 |
61 | 61 | 0.674 |
62 | 62 | 0.631 |
63 | 63 | 0.621 |
64 | 64 | 0.511 |
65 | 65 | 0.896 |
66 | 66 | 0.0505 |
67 | 67 | 0.393 |
68 | 68 | 0.672 |
69 | 69 | 0.827 |
7 | 7 | 0.976 |
70 | 70 | 0.281 |
71 | 71 | 0.0681 |
72 | 72 | 0.484 |
73 | 73 | 0.732 |
74 | 74 | 0.324 |
75 | 75 | 0.0209 |
76 | 76 | 0.0103 |
77 | 77 | 0.012 |
78 | 78 | 0.0132 |
79 | 79 | 0.141 |
8 | 8 | 0.687 |
80 | 80 | 0.0221 |
81 | 81 | 0.217 |
82 | 82 | 0.723 |
83 | 83 | 0.345 |
84 | 84 | 0.839 |
85 | 85 | 0.702 |
86 | 86 | 0.959 |
87 | 87 | 0.618 |
88 | 88 | 0.977 |
89 | 89 | 0.365 |
9 | 9 | 0.233 |
90 | 90 | 0.0241 |
91 | 91 | 0.439 |
92 | 92 | 0.685 |
93 | 93 | 0.144 |
94 | 94 | 0.0309 |
95 | 95 | 0.508 |
96 | 96 | 0.636 |
97 | 97 | 0.835 |
98 | 98 | 0.149 |
99 | 99 | 0.31 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10635
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010029 human trachea - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010029 (human trachea - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)