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(Created page with "{{f5samples |id=FF:10029-101E2 |name=trachea, adult, pool1 |sample_id=10029 |rna_tube_id=101E2 |rna_box=101 |rna_position=E2 |sample_cell_lot=NA |sample_cell_catalog=N...")
 
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{{f5samples
{{f5samples
|id=FF:10029-101E2
|DRA_sample_Accession=CAGE@SAMD00005452
|name=trachea, adult, pool1
|accession_numbers=CAGE;DRX008753;DRR009625;DRZ001050;DRZ002435;DRZ012400;DRZ013785
|sample_id=10029
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=101E2
|rna_box=101
|rna_position=E2
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Ambion
|rna_lot_number=0910061 -20
|rna_catalog_number=Cat:AM6000 Lot:0910061 -20
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=59,72,78 years old adult
|sample_tissue=trachea
|sample_donor(cell lot)=3 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_weight_ug=10.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs10635,LSID657,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001005,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001558,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003126,UBERON:0003127,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007023,UBERON:0007026,UBERON:0007196,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010029
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.44!275.77!EHF;;chr1:201979703..201979721,+!p2@ELF3!2.21!161.16!ELF3;;chr1:201979743..201979762,+!p1@ELF3!2.18!150.26!ELF3;;chr17:74137321..74137337,-!p1@FOXJ1!2.01!102.42!FOXJ1;;chr6:34524093..34524135,-!p1@SPDEF!1.89!76.17!SPDEF;;chr6:126240442..126240459,+!p4@NCOA7!1.86!90.08!NCOA7;;chr22:29196433..29196445,-!p4@XBP1!1.71!55.73!XBP1;;chr17:80797886..80797906,-!p1@ZNF750!1.70!49.06!ZNF750;;chr3:181429704..181429722,+!p1@SOX2!1.63!41.24!SOX2;;chr4:57547454..57547469,-!p1@HOPX!1.62!40.24!HOPX;;chr22:38380543..38380569,-!p1@SOX10!1.61!39.81!SOX10;;chr20:62680984..62680999,-!p1@SOX18!1.60!50.85!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.58!37.44!PAX9;;chr14:38064429..38064486,-!p1@FOXA1!1.57!36.51!FOXA1;;chr11:47400078..47400106,-!p1@SPI1!1.56!35.07!SPI1;;chr5:134369879..134369898,-!p2@PITX1!1.54!33.71!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.53!36.51!IRF6;;chr11:111249993..111250006,-!p1@POU2AF1!1.52!32.06!POU2AF1;;chr12:52445218..52445237,+!p1@NR4A1!1.50!367.36!NR4A1;;chr11:34642656..34642667,+!p2@EHF!1.47!28.62!EHF;;chr6:126240380..126240430,+!p2@NCOA7!1.45!69.28!NCOA7;;chr2:122042770..122042785,-!p1@TFCP2L1!1.45!27.40!TFCP2L1;;chr13:73633131..73633149,+!p1@KLF5!1.44!269.39!KLF5;;chr3:189507432..189507459,+!p1@TP63!1.43!25.96!TP63;;chr8:10588010..10588030,-!p1@SOX7!1.42!25.25!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.40!24.24!ERG;;chr2:68592406..68592424,+!p1@PLEK!1.40!23.88!PLEK;;chr22:29196492..29196503,-!p3@XBP1!1.39!36.15!XBP1;;chr6:134210243..134210257,+!p1@TCF21!1.38!23.24!TCF21;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.73!IRF8;;chr8:55370487..55370503,+!p1@SOX17!1.35!21.23!SOX17;;chr8:23540441..23540466,-!p1@NKX3-1!1.34!41.46!NKX3-1;;chr5:134369905..134369972,-!p1@PITX1!1.34!31.49!PITX1;;chr12:52437488..52437507,+!p2@NR4A1!1.34!20.94!NR4A1;;chr1:170632285..170632309,+!p1@PRRX1!1.32!22.74!PRRX1;;chr6:126240463..126240489,+!p6@NCOA7!1.31!21.66!NCOA7;;chr5:2751762..2751784,-!p1@IRX2!1.30!19.15!IRX2;;chr6:391743..391759,+!p1@IRF4!1.30!19.08!IRF4;;chr17:7493405..7493419,-!p1@SOX15!1.30!19.08!SOX15;;chr1:151804244..151804310,-!p1@RORC!1.29!18.72!RORC;;chr11:129245526..129245553,+!p1@BARX2!1.29!18.36!BARX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.25!27.54!FOXQ1;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.64!GRHL2;;chr2:157189180..157189290,-!p1@NR4A2!1.24!84.56!NR4A2;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.30!TSHZ2;;chr5:121465234..121465263,+!p1@ZNF474!1.22!15.78!ZNF474;;chr14:37126765..37126799,+!p2@PAX9!1.19!14.34!PAX9;;chr7:97840743..97840786,+!p1@BHLHA15!1.17!13.63!BHLHA15;;chr1:40105299..40105326,-!p1@HEYL!1.17!13.63!HEYL;;chr6:168294352..168294371,+!p6@MLLT4!1.16!13.56!MLLT4;;chr11:113930425..113930471,+!p1@ZBTB16!1.15!18.79!ZBTB16;;chr11:34645791..34645836,+!p3@EHF!1.14!12.91!EHF;;chr2:19558373..19558392,-!p1@OSR1!1.12!33.57!OSR1;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.13!TFAP2C;;chr6:126240356..126240379,+!p7@NCOA7!1.11!14.49!NCOA7;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.49!FOXF1;;chr6:34524049..34524089,-!p2@SPDEF!1.10!11.69!SPDEF;;chr11:34535297..34535317,-!p1@ELF5!1.10!11.55!ELF5;;chr14:61116183..61116208,-!p1@SIX1!1.08!42.24!SIX1;;chr15:101069113..101069169,-!p1@CERS3!1.08!10.97!CERS3;;chr2:63277948..63277974,+!p1@OTX1!1.08!10.90!OTX1;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.56!HEY1;;chr1:209979411..209979433,-!p2@IRF6!1.07!10.61!IRF6;;chr22:29196547..29196563,-!p2@XBP1!1.06!389.74!XBP1;;chr6:106534192..106534224,+!p1@PRDM1!1.05!28.90!PRDM1;;chr3:181429741..181429767,+!p2@SOX2!1.05!10.11!SOX2;;chr11:113930291..113930339,+!p2@ZBTB16!1.04!16.35!ZBTB16;;chr3:21792682..21792720,-!p1@ZNF385D!1.04!9.97!ZNF385D;;chr9:102584159..102584174,+!p2@NR4A3!1.03!17.79!NR4A3;;chr7:15726296..15726315,-!p1@MEOX2!1.03!9.68!MEOX2;;chr18:45663490..45663528,-!p2@ZBTB7C!1.03!9.68!ZBTB7C;;chr8:48650715..48650735,-!p1@CEBPD!1.02!1230.75!CEBPD;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.34!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.02!10.69!TCF4;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.54!HIF3A;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr9:3525727..3525828,-!p2@RFX3!1.00!23.67!RFX3;;chr3:169381420..169381535,-!p1@MECOM!1.00!10.69!MECOM;;chr19:54058073..54058088,+!p1@ZNF331!1.00!9.04!ZNF331;;chr5:71803177..71803255,-!p1@ZNF366!1.00!9.04!ZNF366;;chr12:96649259..96649290,+!p9@ELK3!0.99!8.82!ELK3;;chr22:19748231..19748317,+!p1@TBX1!0.99!8.68!TBX1;;chr1:158969752..158969780,+!p6@IFI16!0.98!15.21!IFI16;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.53!KDM5D;;chr11:47400062..47400077,-!p2@SPI1!0.97!8.39!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.96!10.83!BATF;;chr17:53342311..53342400,+!p1@HLF!0.96!9.47!HLF;;chr7:44143925..44143970,+!p1@AEBP1!0.95!181.53!AEBP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.48!TFAP2A;;chr1:158985493..158985535,+!p4@IFI16!0.95!12.12!IFI16;;chr7:15726243..15726293,-!p2@MEOX2!0.95!7.96!MEOX2;;chr9:132427972..132428056,+!p1@PRRX2!0.94!10.11!PRRX2;;chr20:39317868..39317884,-!p1@MAFB!0.93!91.59!MAFB;;chr6:10415276..10415341,-!p2@TFAP2A!0.93!9.32!TFAP2A;;chr4:26165074..26165110,+!p9@RBPJ!0.93!7.46!RBPJ;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.32!SOX9;;chr2:70142232..70142251,+!p1@MXD1!0.91!42.17!MXD1;;chr15:42749722..42749739,-!p2@ZFP106!0.91!13.13!ZFP106;;chr17:80797863..80797874,-!p2@ZNF750!0.91!7.10!ZNF750;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.10!SIX2;;chr9:14180778..14180808,-!p15@NFIB!0.91!7.10!NFIB;;chr2:46524897..46524911,+!p2@EPAS1!0.90!20.37!EPAS1;;chr9:132427883..132427951,+!p2@PRRX2!0.90!6.89!PRRX2;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.69!ZNF385A;;chr9:14314566..14314618,-!p1@NFIB!0.88!83.20!NFIB;;chr7:113726357..113726443,+!p1@FOXP2!0.88!11.55!FOXP2;;chr11:34535332..34535347,-!p2@ELF5!0.88!6.67!ELF5;;chr8:25902876..25902936,-!p1@EBF2!0.88!6.53!EBF2;;chr3:187463179..187463201,-!p2@BCL6!0.87!28.19!BCL6;;chr2:145277882..145277967,-!p3@ZEB2!0.87!11.33!ZEB2;;chr20:50159198..50159299,-!p1@NFATC2!0.87!9.68!NFATC2;;chr2:10091815..10091864,+!p1@GRHL1!0.87!8.68!GRHL1;;chr19:6110458..6110472,-!p3@RFX2!0.87!6.45!RFX2;;chr6:19837592..19837621,+!p1@ID4!0.86!40.02!ID4;;chr17:6926362..6926377,+!p1@BCL6B!0.86!6.31!BCL6B;;chr11:128457446..128457461,-!p4@ETS1!0.86!6.31!ETS1;;chr5:121465268..121465281,+!p2@ZNF474!0.86!6.24!ZNF474;;chr3:168864315..168864339,-!p2@MECOM!0.85!10.26!MECOM;;chr3:126076242..126076257,-!p1@KLF15!0.85!7.60!KLF15;;chr17:59529743..59529798,+!p1@TBX4!0.85!6.02!TBX4;;chr7:44143978..44143989,+!p2@AEBP1!0.84!11.19!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!0.84!7.82!IRX3;;chr7:19157248..19157268,-!p1@TWIST1!0.83!17.00!TWIST1;;chr6:106534230..106534254,+!p2@PRDM1!0.83!15.28!PRDM1;;chr1:24645832..24645853,+!p1@GRHL3!0.83!5.81!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.83!5.81!OVOL2;;chr1:24645921..24645973,+!p2@GRHL3!0.83!5.74!GRHL3;;chr1:25256756..25256774,-!p1@RUNX3!0.82!10.90!RUNX3;;chr6:126240490..126240501,+!p11@NCOA7!0.82!5.67!NCOA7;;chr1:214161272..214161322,+!p1@PROX1!0.81!7.96!PROX1;;chr1:61548225..61548299,+!p1@NFIA!0.80!74.59!NFIA;;chr13:41593425..41593480,-!p1@ELF1!0.80!36.43!ELF1;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.76!SOX15;;chr16:54320646..54320672,-!p2@IRX3!0.80!8.32!IRX3;;chr6:106546808..106546833,+!p3@PRDM1!0.80!6.81!PRDM1;;chr12:81101404..81101421,+!p1@MYF6!0.80!5.38!MYF6;;chr5:88178983..88179012,-!p1@MEF2C!0.79!43.75!MEF2C;;chr9:124991204..124991246,-!p1@LHX6!0.79!5.24!LHX6;;chr4:174451370..174451387,-!p1@HAND2!0.79!5.16!HAND2;;chr6:1610293..1610310,+!p1@FOXC1!0.78!8.68!FOXC1;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.09!DMRTA1;;chr16:52581025..52581072,-!p1@TOX3!0.78!5.09!TOX3;;chr7:63505799..63505904,+!p1@ZNF727!0.78!5.02!ZNF727;;chr2:231090433..231090469,+!p1@SP140!0.78!5.02!SP140;;chr14:105935396..105935413,+!p4@MTA1!0.78!5.02!MTA1;;chrX:106960285..106960299,-!p1@TSC22D3!0.77!145.17!TSC22D3;;chr19:45252008..45252024,+!p2@BCL3!0.77!17.29!BCL3;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.07!IFI16;;chr16:54964740..54964789,+!p1@IRX5!0.77!7.39!IRX5;;chr19:45260775..45260838,+!p5@BCL3!0.77!6.53!BCL3;;chr12:96649237..96649251,+!p15@ELK3!0.77!4.95!ELK3;;chr5:2751785..2751808,-!p2@IRX2!0.77!4.95!IRX2;;chr7:115670804..115670825,-!p1@TFEC!0.77!4.95!TFEC;;chr6:10413188..10413249,-!p7@TFAP2A!0.77!4.88!TFAP2A;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.88!PRRX1;;chr11:113930401..113930422,+!p3@ZBTB16!0.77!4.88!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!0.77!4.88!ZNF385A;;chr3:25469724..25469773,+!p1@RARB!0.76!7.17!RARB;;chr2:63277978..63277995,+!p2@OTX1!0.76!4.81!OTX1;;chr6:168294324..168294335,+!p20@MLLT4!0.76!4.81!MLLT4;;chr9:1050331..1050363,+!p1@DMRT2!0.76!4.73!DMRT2;;chr14:38064590..38064606,-!p2@FOXA1!0.76!4.73!FOXA1;;chr20:51589133..51589159,+!p2@TSHZ2!0.76!4.73!TSHZ2;;chr19:16435625..16435682,+!p1@KLF2!0.75!165.03!KLF2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.75!63.90!ZC3H12A;;chr9:102584262..102584276,+!p1@NR4A3!0.75!11.12!NR4A3;;chr16:54320101..54320125,-!p4@IRX3!0.75!6.81!IRX3;;chr14:24025106..24025172,-!p2@ZFHX2!0.75!6.17!ZFHX2;;chr3:12330560..12330579,+!p1@PPARG!0.75!5.45!PPARG;;chr12:54785054..54785072,-!p4@ZNF385A!0.75!5.38!ZNF385A;;chr19:50922187..50922204,+!p1@SPIB!0.75!4.59!SPIB;;chr12:96588368..96588394,+!p3@ELK3!0.74!12.98!ELK3;;chr1:10754477..10754517,-!p1@CASZ1!0.74!7.82!CASZ1;;chr6:1389789..1389821,+!p1@FOXF2!0.74!6.38!FOXF2;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.95!AEBP1;;chr6:135502501..135502546,+!p1@MYB!0.74!5.52!MYB;;chr19:9811347..9811351,-!p1@ZNF812!0.74!4.52!ZNF812;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.52!ZFY;;chr10:63809013..63809041,+!p3@ARID5B!0.73!26.97!ARID5B;;chr16:79634624..79634642,-!p1@MAF!0.73!18.79!MAF;;chr1:61547894..61547968,+!p2@NFIA!0.73!13.84!NFIA;;chr11:47279504..47279563,+!p1@NR1H3!0.73!10.83!NR1H3;;chr1:170633262..170633285,+!p3@PRRX1!0.73!5.16!PRRX1;;chr3:187463220..187463232,-!p3@BCL6!0.72!14.13!BCL6;;chr8:76319876..76319926,+!p1@HNF4G!0.72!4.23!HNF4G;;chr16:52580953..52580992,-!p2@TOX3!0.72!4.23!TOX3;;chr3:71179699..71179744,-!p2@FOXP1!0.71!34.43!FOXP1;;chr1:61548069..61548102,+!p3@NFIA!0.71!10.83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F4;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.32!1.08!ZNF676;;chr22:31739411..31739446,-!p5@PATZ1!0.32!1.08!PATZ1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.32!1.08!LRRFIP1;;chr3:114343039..114343085,-!p8@ZBTB20!0.32!1.08!ZBTB20;;chr5:121465294..121465301,+!p4@ZNF474!0.32!1.08!ZNF474;;chr6:10412576..10412599,-!p5@TFAP2A!0.32!1.08!TFAP2A;;chr6:106546834..106546850,+!p4@PRDM1!0.32!1.08!PRDM1;;chr6:126070748..126070768,+!p2@HEY2!0.32!1.08!HEY2;;chr7:137620650..137620677,-!p3@CREB3L2!0.32!1.08!CREB3L2;;chr7:15726206..15726217,-!p6@MEOX2!0.32!1.08!MEOX2;;chr9:102584278..102584285,+!p5@NR4A3!0.32!1.08!NR4A3;;chr9:14314642..14314645,-!p16@NFIB!0.32!1.08!NFIB;;chr11:125034605..125034636,+!p2@PKNOX2!0.32!1.08!PKNOX2;;chr11:2292226..2292270,-!p1@ASCL2!0.32!1.08!ASCL2;;chr12:26277994..26278001,-!p6@BHLHE41!0.32!1.08!BHLHE41;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.32!1.08!HOXC5;;chr1:170632683..170632696,+!p12@PRRX1!0.32!1.08!PRRX1;;chr1:50889155..50889173,-!p2@DMRTA2!0.32!1.08!DMRTA2;;chr20:56195525..56195556,-!p2@ZBP1!0.32!1.08!ZBP1;;chr4:103422499..103422632,+!p1@NFKB1!0.31!38.16!NFKB1;;chr2:28616337..28616355,+!p2@FOSL2!0.31!32.20!FOSL2;;chr1:59249732..59249749,-!p2@JUN!0.31!22.09!JUN;;chr6:7107939..7107993,+!p1@RREB1!0.31!21.30!RREB1;;chr15:96873892..96873919,+!p4@NR2F2!0.31!17.57!NR2F2;;chr12:57916466..57916523,+!p2@MBD6!0.31!15.99!MBD6;;chr6:41514305..41514359,+!p2@FOXP4!0.31!14.92!FOXP4;;chr2:113033164..113033219,+!p1@ZC3H6!0.31!14.92!ZC3H6;;chr12:51157744..51157796,+!p2@ATF1!0.31!12.26!ATF1;;chr19:37825540..37825588,+!p2@HKR1!0.31!12.26!HKR1;;chr8:146228270..146228295,-!p1@ZNF252!0.31!9.68!ZNF252P;;chr19:21512202..21512225,-!p1@ZNF708!0.31!8.89!ZNF708;;chr14:62162285..62162296,+!p3@HIF1A!0.31!8.89!HIF1A;;chr12:80084333..80084380,-!p4@PAWR!0.31!8.32!PAWR;;chr3:114343768..114343822,-!p1@ZBTB20!0.31!7.39!ZBTB20;;chr19:20959098..20959117,+!p1@ZNF66P!0.31!7.03!ZNF66P;;chr19:11959532..11959593,+!p1@ZNF439!0.31!6.38!ZNF439;;chr12:80084737..80084763,-!p3@PAWR!0.31!6.24!PAWR;;chr19:3359257..3359362,+!p3@NFIC!0.31!4.88!NFIC;;chr8:28243813..28243839,-!p4@ZNF395!0.31!2.58!ZNF395;;chr17:7382834..7382855,-!p6@ZBTB4!0.31!2.37!ZBTB4;;chr6:45389835..45389861,+!p7@RUNX2!0.31!2.22!RUNX2;;chr8:72756667..72756736,-!p2@MSC!0.31!2.08!MSC;;chr3:170075124..170075136,+!p4@SKIL!0.31!1.79!SKIL;;chr2:192015750..192015793,-!p2@STAT4!0.31!1.72!STAT4;;chr3:71632811..71632825,-!p19@FOXP1!0.31!1.65!FOXP1;;chr1:47903709..47903764,+!p1@BC169308!0.31!1.29!FOXD2;;chr12:57916584..57916682,+!p1@MBD6!0.30!35.29!MBD6;;chr6:126112074..126112144,+!p1@NCOA7!0.30!24.03!NCOA7;;chr6:87865262..87865311,+!p1@ZNF292!0.30!23.31!ZNF292;;chr19:4066803..4066886,-!p1@ZBTB7A!0.30!18.58!ZBTB7A;;chr14:90085458..90085557,-!p1@FOXN3!0.30!18.22!FOXN3;;chr1:8877692..8877732,-!p1@RERE!0.30!13.91!RERE;;chr14:74253865..74253917,-!p2@C14orf43!0.30!10.97!C14orf43;;chr1:227751231..227751273,+!p1@ZNF678!0.30!10.76!ZNF678;;chr12:80084303..80084332,-!p1@PAWR!0.30!9.97!PAWR;;chr11:58346525..58346570,+!p1@ZFP91!0.30!8.03!ZFP91;;chr19:12595586..12595637,-!p2@ZNF709!0.30!6.74!ZNF709;;chr4:38665883..38665922,+!p3@KLF3!0.30!6.17!KLF3;;chr10:43133950..43133994,-!p2@ZNF33B!0.30!5.81!ZNF33B;;chr3:71630980..71631110,-!p3@FOXP1!0.30!5.59!FOXP1;;chr9:73028332..73028385,-!p3@KLF9!0.30!5.52!KLF9;;chr20:39946361..39946379,-!p2@ZHX3!0.30!4.66!ZHX3;;chr12:10875658..10875708,-!p2@CSDA!0.30!3.37!CSDA;;chr18:47814186..47814232,-!p2@CXXC1!0.30!2.94!CXXC1;;chr2:70314240..70314256,+!p4@PCBP1!0.30!2.94!PCBP1;;chr16:89787973..89788001,+!p3@ZNF276!0.30!2.65!ZNF276;;chr1:221052776..221052799,+!p1@HLX!0.30!2.51!HLX;;chr19:4066890..4066903,-!p6@ZBTB7A!0.30!2.15!ZBTB7A;;chr19:31840130..31840160,-!p2@TSHZ3!0.30!2.01!TSHZ3;;chr19:13134772..13134822,+!p2@NFIX!0.30!1.86!NFIX;;chr14:21566882..21566898,-!p3@ZNF219!0.30!1.86!ZNF219;;chr12:125002827..125002855,-!p5@NCOR2!0.30!1.79!NCOR2;;chr8:106330696..106330719,+!p2@ZFPM2!0.30!1.51!ZFPM2;;chr2:176033066..176033087,-!p2@ATF2!0.30!1.51!ATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.30!1.43!HOXC4;;chr8:28243785..28243799,-!p6@ZNF395!0.30!1.36!ZNF395;;chr5:134370033..134370042,-!p5@PITX1!0.30!1.00!PITX1;;chr6:1389824..1389840,+!p3@FOXF2!0.30!1.00!FOXF2;;chr7:27142290..27142310,-!p1@HOXA2!0.30!1.00!HOXA2;;chr7:50348268..50348366,+!p4@IKZF1!0.30!1.00!IKZF1;;chr8:102504932..102504952,+!p4@GRHL2!0.30!1.00!GRHL2;;chr2:10091783..10091811,+!p2@GRHL1!0.30!1.00!GRHL1;;chr2:177001290..177001315,+!p1@HOXD3!0.30!1.00!HOXD3;;chr2:178129746..178129769,-!p13@NFE2L2!0.30!1.00!NFE2L2;;chr2:68592394..68592405,+!p2@PLEK!0.30!1.00!PLEK;;chr14:95236440..95236465,-!p1@GSC!0.30!1.00!GSC;;chr15:101069102..101069112,-!p2@CERS3!0.30!1.00!CERS3;;chr18:53068940..53068951,-!p21@TCF4!0.30!1.00!TCF4;;chr20:51589792..51589811,+!p7@TSHZ2!0.30!1.00!TSHZ2;;chr20:51589835..51589848,+!p5@TSHZ2!0.30!1.00!TSHZ2;;chr10:102891048..102891078,+!p1@TLX1!0.30!1.00!TLX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.30!1.00!PKNOX2;;chr11:34535276..34535287,-!p3@ELF5!0.30!1.00!ELF5;;chr12:101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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520adult%252c%2520pool1.CNhs10635.10029-101E2.hg38.nobarcode.ctss.bed.gz
|id=FF:10029-101E2
|is_a=EFO:0002091;;FF:0010029
|is_obsolete=
|library_id=CNhs10635
|library_id_phase_based=2:CNhs10635
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10029
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10029
|name=trachea, adult, pool1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10635,LSID657,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=101
|rna_catalog_number=Cat:AM6000 Lot:0910061 -20
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0
|rna_lot_number=0910061 -20
|rna_od260/230=
|rna_od260/280=
|rna_position=E2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.01E+04
|rna_weight_ug=10
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Ambion
|sample_description=
|sample_dev_stage=59,72,78 years old adult
|sample_disease=normal
|sample_donor(cell lot)=3 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.41190878893976e-253!GO:0005737;cytoplasm;2.60364415917423e-188!GO:0044444;cytoplasmic part;7.02561920711904e-114!GO:0043226;organelle;3.73413701042173e-109!GO:0043229;intracellular organelle;9.49791170589749e-109!GO:0005515;protein binding;2.97402329392566e-105!GO:0043227;membrane-bound organelle;1.71002696671371e-91!GO:0043231;intracellular membrane-bound organelle;2.25282539001272e-91!GO:0044422;organelle part;3.15323707013977e-83!GO:0044446;intracellular organelle part;1.70090039730193e-81!GO:0032991;macromolecular complex;3.61716843401976e-58!GO:0030529;ribonucleoprotein complex;3.62316463532574e-49!GO:0003723;RNA binding;2.64765890950488e-41!GO:0016043;cellular component organization and biogenesis;7.10542895450743e-41!GO:0019538;protein metabolic process;9.37152136961839e-41!GO:0031090;organelle membrane;1.63791554972727e-39!GO:0033036;macromolecule localization;1.66162787742296e-37!GO:0043233;organelle lumen;1.7231860338071e-37!GO:0031974;membrane-enclosed lumen;1.7231860338071e-37!GO:0015031;protein transport;7.28712430898845e-36!GO:0045184;establishment of protein localization;1.41506233508735e-35!GO:0044260;cellular macromolecule metabolic process;1.99158787654605e-35!GO:0008104;protein localization;2.92649084684753e-35!GO:0005829;cytosol;7.57032409217199e-35!GO:0044428;nuclear part;9.35448614775429e-35!GO:0044237;cellular metabolic process;1.32620513901774e-34!GO:0044267;cellular protein metabolic process;1.61373911133449e-34!GO:0044238;primary metabolic process;3.82122159431078e-34!GO:0043170;macromolecule metabolic process;1.22908228576987e-31!GO:0005739;mitochondrion;2.65327394672869e-31!GO:0006412;translation;9.63003417385615e-31!GO:0005840;ribosome;3.68878137690439e-30!GO:0043234;protein complex;6.1844428465291e-30!GO:0046907;intracellular transport;2.42742747839629e-27!GO:0009059;macromolecule biosynthetic process;1.96738141773029e-26!GO:0003735;structural constituent of ribosome;2.66564276425072e-26!GO:0009058;biosynthetic process;3.0779004072463e-26!GO:0016071;mRNA metabolic process;1.12992845772868e-24!GO:0006886;intracellular protein transport;2.12447615169457e-24!GO:0043228;non-membrane-bound organelle;1.45995285379364e-23!GO:0043232;intracellular non-membrane-bound organelle;1.45995285379364e-23!GO:0031967;organelle envelope;1.59406316483688e-23!GO:0006396;RNA processing;1.96938195301159e-23!GO:0033279;ribosomal subunit;2.12086051989085e-23!GO:0031975;envelope;2.79510609252535e-23!GO:0044429;mitochondrial part;1.02959178909763e-22!GO:0008380;RNA splicing;2.30060381759474e-22!GO:0065003;macromolecular complex assembly;2.53209022855134e-22!GO:0044249;cellular biosynthetic process;2.80611228739764e-22!GO:0005783;endoplasmic reticulum;4.6263894900769e-22!GO:0031981;nuclear lumen;1.52879450364144e-21!GO:0022607;cellular component assembly;3.50539634834865e-21!GO:0006397;mRNA processing;2.31595957959791e-20!GO:0005634;nucleus;3.10853521435253e-20!GO:0048770;pigment granule;5.3886791455951e-20!GO:0042470;melanosome;5.3886791455951e-20!GO:0012505;endomembrane system;1.08151677471955e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.88566594077732e-19!GO:0005794;Golgi apparatus;1.73790532044542e-18!GO:0051649;establishment of cellular localization;4.27653005715087e-18!GO:0051641;cellular localization;5.34659735061045e-18!GO:0044445;cytosolic part;2.28272600099006e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.88192588882706e-17!GO:0008134;transcription factor binding;8.81177179776524e-17!GO:0012501;programmed cell death;3.05995974992097e-16!GO:0006915;apoptosis;4.01698678887975e-16!GO:0005740;mitochondrial envelope;6.25551643853789e-16!GO:0005681;spliceosome;6.35885760511343e-16!GO:0006119;oxidative phosphorylation;9.90670484424131e-16!GO:0006996;organelle organization and biogenesis;1.33202014663588e-15!GO:0031966;mitochondrial membrane;2.37438589415954e-15!GO:0044432;endoplasmic reticulum part;6.1456310445102e-15!GO:0008219;cell death;7.16201433588666e-15!GO:0016265;death;7.16201433588666e-15!GO:0016192;vesicle-mediated transport;8.24897305459993e-15!GO:0019866;organelle inner membrane;9.90033645579644e-15!GO:0006457;protein folding;3.63029751494431e-14!GO:0008092;cytoskeletal protein binding;4.56033675209888e-14!GO:0005743;mitochondrial inner membrane;8.65131019424164e-14!GO:0048523;negative regulation of cellular process;1.27914564783717e-13!GO:0000166;nucleotide binding;1.37474139814613e-13!GO:0044265;cellular macromolecule catabolic process;1.83884075516223e-13!GO:0022618;protein-RNA complex assembly;2.42659410380556e-13!GO:0015935;small ribosomal subunit;4.3012992006968e-13!GO:0016462;pyrophosphatase activity;9.6375248538075e-13!GO:0043285;biopolymer catabolic process;1.03299781296363e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.06467100766782e-12!GO:0005654;nucleoplasm;1.31656608695932e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.50733618955577e-12!GO:0048519;negative regulation of biological process;1.56300022303296e-12!GO:0048193;Golgi vesicle transport;1.87446205206466e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.8887187424533e-12!GO:0017111;nucleoside-triphosphatase activity;2.76974933432144e-12!GO:0006605;protein targeting;3.81771989312938e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.55104237135673e-12!GO:0009057;macromolecule catabolic process;7.52082580514888e-12!GO:0019941;modification-dependent protein catabolic process;7.72153325892152e-12!GO:0043632;modification-dependent macromolecule catabolic process;7.72153325892152e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.59485691400903e-12!GO:0030163;protein catabolic process;9.51022274710366e-12!GO:0030036;actin cytoskeleton organization and biogenesis;1.68129015068823e-11!GO:0044257;cellular protein catabolic process;1.80410050556204e-11!GO:0015934;large ribosomal subunit;3.03055424035659e-11!GO:0005746;mitochondrial respiratory chain;3.85947592485995e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.88579124350615e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.09700535293724e-11!GO:0006461;protein complex assembly;6.84747771536868e-11!GO:0044455;mitochondrial membrane part;6.85415687444328e-11!GO:0043283;biopolymer metabolic process;6.85415687444328e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.85181436512127e-11!GO:0005789;endoplasmic reticulum membrane;1.00451652209761e-10!GO:0005793;ER-Golgi intermediate compartment;1.08423087500242e-10!GO:0031982;vesicle;1.1494932587657e-10!GO:0008135;translation factor activity, nucleic acid binding;1.54789890671187e-10!GO:0044451;nucleoplasm part;1.58028078518708e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.60473356879299e-10!GO:0003954;NADH dehydrogenase activity;1.60473356879299e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.60473356879299e-10!GO:0044248;cellular catabolic process;1.94112920802255e-10!GO:0003712;transcription cofactor activity;2.24212495913385e-10!GO:0010467;gene expression;2.26513985971281e-10!GO:0030029;actin filament-based process;2.97723872790327e-10!GO:0017076;purine nucleotide binding;3.62801133006263e-10!GO:0031988;membrane-bound vesicle;3.7846997729691e-10!GO:0031410;cytoplasmic vesicle;4.53582270281429e-10!GO:0042981;regulation of apoptosis;5.75161450271322e-10!GO:0051082;unfolded protein binding;6.51247856558162e-10!GO:0006950;response to stress;6.8057346522798e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.92230733830049e-10!GO:0032553;ribonucleotide binding;8.09273168488943e-10!GO:0032555;purine ribonucleotide binding;8.09273168488943e-10!GO:0016874;ligase activity;9.80054353313413e-10!GO:0016023;cytoplasmic membrane-bound vesicle;1.19171399643488e-09!GO:0043067;regulation of programmed cell death;1.45071903127457e-09!GO:0003779;actin binding;1.5308355427807e-09!GO:0008565;protein transporter activity;1.55031673060803e-09!GO:0005730;nucleolus;1.80707266253736e-09!GO:0006366;transcription from RNA polymerase II promoter;2.02858548083883e-09!GO:0043412;biopolymer modification;2.11385128095588e-09!GO:0031980;mitochondrial lumen;2.62095402293922e-09!GO:0005759;mitochondrial matrix;2.62095402293922e-09!GO:0005768;endosome;3.44573832951215e-09!GO:0006446;regulation of translational initiation;3.65965525749889e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.79372747637791e-09!GO:0006913;nucleocytoplasmic transport;3.90753195003771e-09!GO:0006464;protein modification process;6.0500836150859e-09!GO:0030964;NADH dehydrogenase complex (quinone);8.36594128987432e-09!GO:0045271;respiratory chain complex I;8.36594128987432e-09!GO:0005747;mitochondrial respiratory chain complex I;8.36594128987432e-09!GO:0003743;translation initiation factor activity;8.88425704264857e-09!GO:0051246;regulation of protein metabolic process;9.0157566978518e-09!GO:0042775;organelle ATP synthesis coupled electron transport;9.0157566978518e-09!GO:0042773;ATP synthesis coupled electron transport;9.0157566978518e-09!GO:0051169;nuclear transport;1.05207871402558e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.3710879766106e-08!GO:0006413;translational initiation;1.42290855761486e-08!GO:0051186;cofactor metabolic process;2.81460087795004e-08!GO:0005635;nuclear envelope;3.19122436837979e-08!GO:0031252;leading edge;3.39664228740442e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;3.82623745509104e-08!GO:0000375;RNA splicing, via transesterification reactions;3.82623745509104e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.82623745509104e-08!GO:0003924;GTPase activity;4.58307682414313e-08!GO:0043069;negative regulation of programmed cell death;5.25752550580774e-08!GO:0016604;nuclear body;5.94942137991534e-08!GO:0043066;negative regulation of apoptosis;6.14069839802559e-08!GO:0044431;Golgi apparatus part;6.90945687227104e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.0277513470964e-07!GO:0006512;ubiquitin cycle;1.16506345706448e-07!GO:0009055;electron carrier activity;1.17145232832633e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.31708724094719e-07!GO:0016564;transcription repressor activity;1.37965386419411e-07!GO:0005761;mitochondrial ribosome;1.42414190559576e-07!GO:0000313;organellar ribosome;1.42414190559576e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.68043703022662e-07!GO:0048522;positive regulation of cellular process;2.17567449626033e-07!GO:0017038;protein import;3.30031903186651e-07!GO:0016607;nuclear speck;3.75863786351312e-07!GO:0043687;post-translational protein modification;3.78544230385354e-07!GO:0031965;nuclear membrane;4.32187139805913e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.87186395564969e-07!GO:0019829;cation-transporting ATPase activity;5.09828838060718e-07!GO:0051789;response to protein stimulus;5.25003814322108e-07!GO:0006986;response to unfolded protein;5.25003814322108e-07!GO:0005773;vacuole;6.01912766540661e-07!GO:0005525;GTP binding;6.36144690372902e-07!GO:0006916;anti-apoptosis;6.39106702121731e-07!GO:0009060;aerobic respiration;6.61092929759795e-07!GO:0007243;protein kinase cascade;6.85736568707217e-07!GO:0009150;purine ribonucleotide metabolic process;6.93847671995913e-07!GO:0048518;positive regulation of biological process;7.05716168098989e-07!GO:0019899;enzyme binding;7.52390730016553e-07!GO:0006732;coenzyme metabolic process;7.68365509258502e-07!GO:0009259;ribonucleotide metabolic process;7.81941039649321e-07!GO:0006163;purine nucleotide metabolic process;8.48160137332703e-07!GO:0009056;catabolic process;1.02335033887018e-06!GO:0045333;cellular respiration;1.20745448253569e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.30349880885894e-06!GO:0030120;vesicle coat;1.38760938750928e-06!GO:0030662;coated vesicle membrane;1.38760938750928e-06!GO:0048475;coated membrane;1.68024277889153e-06!GO:0030117;membrane coat;1.68024277889153e-06!GO:0006793;phosphorus metabolic process;2.04408045169104e-06!GO:0006796;phosphate metabolic process;2.04408045169104e-06!GO:0009141;nucleoside triphosphate metabolic process;2.08121830908309e-06!GO:0007264;small GTPase mediated signal transduction;2.08388474882235e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.08388474882235e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.08388474882235e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.31930006902853e-06!GO:0030554;adenyl nucleotide binding;2.39541989639956e-06!GO:0031324;negative regulation of cellular metabolic process;2.52786057507292e-06!GO:0015986;ATP synthesis coupled proton transport;2.52974691531947e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.52974691531947e-06!GO:0016044;membrane organization and biogenesis;2.93448104128711e-06!GO:0005524;ATP binding;3.22230204884467e-06!GO:0015629;actin cytoskeleton;3.46007403041898e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.52973272675206e-06!GO:0000323;lytic vacuole;3.55825166653434e-06!GO:0005764;lysosome;3.55825166653434e-06!GO:0003714;transcription corepressor activity;3.65872499071683e-06!GO:0008639;small protein conjugating enzyme activity;3.66143759005012e-06!GO:0007010;cytoskeleton organization and biogenesis;3.66143759005012e-06!GO:0006099;tricarboxylic acid cycle;3.6822367399634e-06!GO:0046356;acetyl-CoA catabolic process;3.6822367399634e-06!GO:0000139;Golgi membrane;3.84840057426213e-06!GO:0032559;adenyl ribonucleotide binding;4.18103318809258e-06!GO:0051170;nuclear import;4.33663802398414e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.58876690968755e-06!GO:0004842;ubiquitin-protein ligase activity;5.11975808630645e-06!GO:0006606;protein import into nucleus;5.88753303042013e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.18069251570038e-06!GO:0009892;negative regulation of metabolic process;6.2305857472444e-06!GO:0009152;purine ribonucleotide biosynthetic process;7.34670075165175e-06!GO:0005856;cytoskeleton;7.9417114482197e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.34848676909467e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.47039322670955e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.47039322670955e-06!GO:0006164;purine nucleotide biosynthetic process;8.63541825345436e-06!GO:0019787;small conjugating protein ligase activity;8.94864203131936e-06!GO:0005788;endoplasmic reticulum lumen;9.33218894293522e-06!GO:0009142;nucleoside triphosphate biosynthetic process;9.50159803216562e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.50159803216562e-06!GO:0042802;identical protein binding;9.96353444071085e-06!GO:0032561;guanyl ribonucleotide binding;9.96353444071085e-06!GO:0019001;guanyl nucleotide binding;9.96353444071085e-06!GO:0009109;coenzyme catabolic process;1.03308161654286e-05!GO:0016887;ATPase activity;1.13680680872997e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.3106925573345e-05!GO:0005770;late endosome;1.3106925573345e-05!GO:0051187;cofactor catabolic process;1.33483004183314e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.35640630554106e-05!GO:0009260;ribonucleotide biosynthetic process;1.5840129010307e-05!GO:0016481;negative regulation of transcription;1.84502749727038e-05!GO:0006613;cotranslational protein targeting to membrane;1.87414893103981e-05!GO:0046034;ATP metabolic process;2.18820866852619e-05!GO:0042254;ribosome biogenesis and assembly;2.58161701361563e-05!GO:0044440;endosomal part;2.6481616756599e-05!GO:0010008;endosome membrane;2.6481616756599e-05!GO:0008361;regulation of cell size;2.74217130170823e-05!GO:0016049;cell growth;2.90039915514497e-05!GO:0030133;transport vesicle;2.97338993781404e-05!GO:0016310;phosphorylation;2.9992361541362e-05!GO:0044453;nuclear membrane part;3.0384431472616e-05!GO:0050789;regulation of biological process;3.08970014145766e-05!GO:0006084;acetyl-CoA metabolic process;3.21286183333378e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.66004062639674e-05!GO:0003713;transcription coactivator activity;3.78620545091044e-05!GO:0016881;acid-amino acid ligase activity;3.87501575341687e-05!GO:0004298;threonine endopeptidase activity;4.47066640598236e-05!GO:0016491;oxidoreductase activity;4.58736761420558e-05!GO:0001666;response to hypoxia;5.45041919504933e-05!GO:0005798;Golgi-associated vesicle;7.27007772070219e-05!GO:0001558;regulation of cell growth;7.4939814817496e-05!GO:0050794;regulation of cellular process;7.64631984559085e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.86134026039473e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.56887207847933e-05!GO:0006754;ATP biosynthetic process;8.82812328202745e-05!GO:0006753;nucleoside phosphate metabolic process;8.82812328202745e-05!GO:0048471;perinuclear region of cytoplasm;9.02782734804807e-05!GO:0001726;ruffle;0.000100639634210962!GO:0006979;response to oxidative stress;0.000100688234831729!GO:0045786;negative regulation of progression through cell cycle;0.000109429297282166!GO:0006091;generation of precursor metabolites and energy;0.00012687952781029!GO:0030532;small nuclear ribonucleoprotein complex;0.00012703659755077!GO:0000245;spliceosome assembly;0.000145531715930036!GO:0045259;proton-transporting ATP synthase complex;0.000147453878236484!GO:0005791;rough endoplasmic reticulum;0.000162849033719148!GO:0016563;transcription activator activity;0.000181246385327985!GO:0005643;nuclear pore;0.000184164732574729!GO:0005912;adherens junction;0.000205720477805845!GO:0051128;regulation of cellular component organization and biogenesis;0.000284740305641641!GO:0042623;ATPase activity, coupled;0.000310761917338782!GO:0006897;endocytosis;0.000337705873031606!GO:0010324;membrane invagination;0.000337705873031606!GO:0048468;cell development;0.000392740470496931!GO:0015980;energy derivation by oxidation of organic compounds;0.000394967370171338!GO:0016197;endosome transport;0.000422692945176819!GO:0051674;localization of cell;0.000430260062115995!GO:0006928;cell motility;0.000430260062115995!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000433623058410165!GO:0004812;aminoacyl-tRNA ligase activity;0.000433623058410165!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000433623058410165!GO:0008026;ATP-dependent helicase activity;0.000448195569430458!GO:0003724;RNA helicase activity;0.000493805548441214!GO:0030867;rough endoplasmic reticulum membrane;0.000498345345753688!GO:0019843;rRNA binding;0.0005276492386803!GO:0033116;ER-Golgi intermediate compartment membrane;0.000539344522268953!GO:0050657;nucleic acid transport;0.000544672384994648!GO:0051236;establishment of RNA localization;0.000544672384994648!GO:0050658;RNA transport;0.000544672384994648!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000544672384994648!GO:0030027;lamellipodium;0.000569557430012388!GO:0007242;intracellular signaling cascade;0.00058561390140051!GO:0045893;positive regulation of transcription, DNA-dependent;0.000586887702912351!GO:0004386;helicase activity;0.000635211011268295!GO:0032446;protein modification by small protein conjugation;0.000668020899713797!GO:0006403;RNA localization;0.000670929042883577!GO:0043021;ribonucleoprotein binding;0.000676273822778341!GO:0043038;amino acid activation;0.000676273822778341!GO:0006418;tRNA aminoacylation for protein translation;0.000676273822778341!GO:0043039;tRNA aminoacylation;0.000676273822778341!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000721508863488741!GO:0016567;protein ubiquitination;0.000793702377398798!GO:0008250;oligosaccharyl transferase complex;0.000820578110025559!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000828655118787795!GO:0006259;DNA metabolic process;0.000832634577748458!GO:0005769;early endosome;0.000835134127256516!GO:0007265;Ras protein signal transduction;0.000835134127256516!GO:0009966;regulation of signal transduction;0.000859331074412493!GO:0043065;positive regulation of apoptosis;0.000916661062339259!GO:0006693;prostaglandin metabolic process;0.00092928771683742!GO:0006692;prostanoid metabolic process;0.00092928771683742!GO:0009967;positive regulation of signal transduction;0.000973472451709021!GO:0006612;protein targeting to membrane;0.000990639334727058!GO:0022890;inorganic cation transmembrane transporter activity;0.00100668275958502!GO:0005885;Arp2/3 protein complex;0.0010782393787134!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108351180651189!GO:0045941;positive regulation of transcription;0.00108898302257201!GO:0033673;negative regulation of kinase activity;0.00116664744157787!GO:0006469;negative regulation of protein kinase activity;0.00116664744157787!GO:0043566;structure-specific DNA binding;0.00117104517788749!GO:0065002;intracellular protein transport across a membrane;0.00120386429683866!GO:0007005;mitochondrion organization and biogenesis;0.00126400226370018!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00126493915358749!GO:0045892;negative regulation of transcription, DNA-dependent;0.00137251821526009!GO:0004576;oligosaccharyl transferase activity;0.0013761638744742!GO:0065007;biological regulation;0.00144811443689327!GO:0008154;actin polymerization and/or depolymerization;0.00146423038690298!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00151304484530851!GO:0043068;positive regulation of programmed cell death;0.00155788655527533!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00163623212981015!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00172156981445247!GO:0051920;peroxiredoxin activity;0.00177040073666522!GO:0005741;mitochondrial outer membrane;0.00179007158132134!GO:0007049;cell cycle;0.00180427244459297!GO:0030118;clathrin coat;0.00181203057726743!GO:0008286;insulin receptor signaling pathway;0.00181203057726743!GO:0016072;rRNA metabolic process;0.00193216563126198!GO:0051427;hormone receptor binding;0.00195042077302456!GO:0046930;pore complex;0.00202092362455607!GO:0006752;group transfer coenzyme metabolic process;0.00202859407236185!GO:0005048;signal sequence binding;0.00206038766594813!GO:0031968;organelle outer membrane;0.00214866167721917!GO:0016859;cis-trans isomerase activity;0.00214866167721917!GO:0030658;transport vesicle membrane;0.00236677753304549!GO:0009615;response to virus;0.00240032186408084!GO:0003697;single-stranded DNA binding;0.00260176849659936!GO:0043623;cellular protein complex assembly;0.00269028050789325!GO:0000074;regulation of progression through cell cycle;0.00282695731168005!GO:0019867;outer membrane;0.00285840163269615!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00290306550331785!GO:0051188;cofactor biosynthetic process;0.00292144491743402!GO:0009117;nucleotide metabolic process;0.00300308132791702!GO:0008654;phospholipid biosynthetic process;0.0030071143344679!GO:0051726;regulation of cell cycle;0.00313052162452656!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00320840263546582!GO:0001725;stress fiber;0.00321342818001072!GO:0032432;actin filament bundle;0.00321342818001072!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00331212809700694!GO:0005667;transcription factor complex;0.00332562891261603!GO:0051348;negative regulation of transferase activity;0.00332734136998796!GO:0035257;nuclear hormone receptor binding;0.00349767868040539!GO:0040008;regulation of growth;0.00360234243386239!GO:0008283;cell proliferation;0.00362029630078469!GO:0030031;cell projection biogenesis;0.00368372014231617!GO:0048500;signal recognition particle;0.00375837748158908!GO:0045454;cell redox homeostasis;0.00376399422937038!GO:0008186;RNA-dependent ATPase activity;0.00382020485806691!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00397742641771653!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00397742641771653!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00397742641771653!GO:0000151;ubiquitin ligase complex;0.00407248504559821!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00427373667477678!GO:0033043;regulation of organelle organization and biogenesis;0.00427373667477678!GO:0016853;isomerase activity;0.00453865894487544!GO:0030041;actin filament polymerization;0.00466113223939925!GO:0030127;COPII vesicle coat;0.00466978183814868!GO:0012507;ER to Golgi transport vesicle membrane;0.00466978183814868!GO:0051028;mRNA transport;0.00501303017382362!GO:0051235;maintenance of localization;0.00501303017382362!GO:0043488;regulation of mRNA stability;0.0050300286050274!GO:0043487;regulation of RNA stability;0.0050300286050274!GO:0019838;growth factor binding;0.00505466481033952!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00508908599963973!GO:0006401;RNA catabolic process;0.00511414025575396!GO:0006607;NLS-bearing substrate import into nucleus;0.00517519198474914!GO:0018196;peptidyl-asparagine modification;0.00518481684988896!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00518481684988896!GO:0005905;coated pit;0.00538090568915007!GO:0006364;rRNA processing;0.00543560864860818!GO:0005083;small GTPase regulator activity;0.00552788966023394!GO:0006891;intra-Golgi vesicle-mediated transport;0.0056467311476634!GO:0031072;heat shock protein binding;0.00581141965864651!GO:0006402;mRNA catabolic process;0.00592574221344873!GO:0030134;ER to Golgi transport vesicle;0.00592574221344873!GO:0015992;proton transport;0.00602389472898585!GO:0004860;protein kinase inhibitor activity;0.00661888412081601!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00688123641039622!GO:0005762;mitochondrial large ribosomal subunit;0.00744187526601168!GO:0000315;organellar large ribosomal subunit;0.00744187526601168!GO:0006818;hydrogen transport;0.00744726697403109!GO:0004197;cysteine-type endopeptidase activity;0.00753729452919642!GO:0030832;regulation of actin filament length;0.00757971598490742!GO:0009108;coenzyme biosynthetic process;0.00757971598490742!GO:0001944;vasculature development;0.00759727786341952!GO:0006892;post-Golgi vesicle-mediated transport;0.00759727786341952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00759976931614599!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00786210069577731!GO:0045047;protein targeting to ER;0.00786210069577731!GO:0030569;chymotrypsin inhibitor activity;0.00792829569352875!GO:0001516;prostaglandin biosynthetic process;0.00793051358159984!GO:0046457;prostanoid biosynthetic process;0.00793051358159984!GO:0031032;actomyosin structure organization and biogenesis;0.00802946733382703!GO:0003702;RNA polymerase II transcription factor activity;0.00818348081334699!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0082178502646803!GO:0032535;regulation of cellular component size;0.00858448737473581!GO:0030660;Golgi-associated vesicle membrane;0.00861540592789664!GO:0032940;secretion by cell;0.00904574216057301!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00922799970074081!GO:0001568;blood vessel development;0.00937662989436444!GO:0030176;integral to endoplasmic reticulum membrane;0.00947503889992951!GO:0004004;ATP-dependent RNA helicase activity;0.00958258868071328!GO:0017166;vinculin binding;0.00970854335957515!GO:0006323;DNA packaging;0.00979013147795785!GO:0006917;induction of apoptosis;0.00988273208787237!GO:0065009;regulation of a molecular function;0.00997572428543326!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0101565093523425!GO:0017022;myosin binding;0.0101565093523425!GO:0051252;regulation of RNA metabolic process;0.0104283470032493!GO:0008139;nuclear localization sequence binding;0.0112754586454742!GO:0031589;cell-substrate adhesion;0.0113011068582232!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0113116449571398!GO:0051087;chaperone binding;0.0114011181748934!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0115248280706877!GO:0007266;Rho protein signal transduction;0.0117364144586485!GO:0050662;coenzyme binding;0.0118703219616177!GO:0051168;nuclear export;0.0121073015047773!GO:0015630;microtubule cytoskeleton;0.0122447017954243!GO:0051101;regulation of DNA binding;0.0122606944810752!GO:0016126;sterol biosynthetic process;0.0126371868836155!GO:0016568;chromatin modification;0.0128739161663227!GO:0030119;AP-type membrane coat adaptor complex;0.0128796386927757!GO:0044262;cellular carbohydrate metabolic process;0.0130103750581208!GO:0005862;muscle thin filament tropomyosin;0.0133374436080253!GO:0006414;translational elongation;0.0140792137131628!GO:0035258;steroid hormone receptor binding;0.0141361917012485!GO:0030131;clathrin adaptor complex;0.0142951355779474!GO:0012502;induction of programmed cell death;0.0144445855223155!GO:0016363;nuclear matrix;0.0150921719225385!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0153211178423701!GO:0030132;clathrin coat of coated pit;0.0153867800518903!GO:0008312;7S RNA binding;0.0154747970976834!GO:0030663;COPI coated vesicle membrane;0.0156673997567309!GO:0030126;COPI vesicle coat;0.0156673997567309!GO:0045045;secretory pathway;0.0161639921561864!GO:0030100;regulation of endocytosis;0.0167384757603484!GO:0030216;keratinocyte differentiation;0.016936980350629!GO:0006417;regulation of translation;0.0172907530720356!GO:0019904;protein domain specific binding;0.0176068828865348!GO:0030674;protein binding, bridging;0.0176166388685457!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.017700158153814!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0178973867539271!GO:0006399;tRNA metabolic process;0.0187285812465015!GO:0046983;protein dimerization activity;0.0191664417123643!GO:0030695;GTPase regulator activity;0.0195578914337653!GO:0006984;ER-nuclear signaling pathway;0.0196837595894404!GO:0045792;negative regulation of cell size;0.0199376748222758!GO:0007050;cell cycle arrest;0.0199683947555567!GO:0009607;response to biotic stimulus;0.0201001581900491!GO:0003729;mRNA binding;0.0207092758422568!GO:0030308;negative regulation of cell growth;0.0207092758422568!GO:0007160;cell-matrix adhesion;0.0207967913498426!GO:0019210;kinase inhibitor activity;0.0216916341094738!GO:0035035;histone acetyltransferase binding;0.0221195820543408!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0221275801602918!GO:0030055;cell-matrix junction;0.0230790715561587!GO:0048487;beta-tubulin binding;0.0231388435694599!GO:0043681;protein import into mitochondrion;0.0232743141571465!GO:0031902;late endosome membrane;0.0233551148419073!GO:0008383;manganese superoxide dismutase activity;0.0234274639140747!GO:0001315;age-dependent response to reactive oxygen species;0.0234274639140747!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0235682818859469!GO:0001525;angiogenesis;0.0235942054511324!GO:0003690;double-stranded DNA binding;0.023776699524889!GO:0008047;enzyme activator activity;0.0239763430148743!GO:0016070;RNA metabolic process;0.0245064578275844!GO:0046822;regulation of nucleocytoplasmic transport;0.0248865283375374!GO:0016787;hydrolase activity;0.0249249667936012!GO:0005774;vacuolar membrane;0.0249351470194425!GO:0030518;steroid hormone receptor signaling pathway;0.0250892907568105!GO:0012506;vesicle membrane;0.0252243901210899!GO:0008234;cysteine-type peptidase activity;0.025421634262419!GO:0030659;cytoplasmic vesicle membrane;0.0258581260168555!GO:0050811;GABA receptor binding;0.0259924482074151!GO:0005913;cell-cell adherens junction;0.0259924482074151!GO:0030137;COPI-coated vesicle;0.0259924482074151!GO:0006509;membrane protein ectodomain proteolysis;0.0259924482074151!GO:0033619;membrane protein proteolysis;0.0259924482074151!GO:0018193;peptidyl-amino acid modification;0.0263588424785412!GO:0005924;cell-substrate adherens junction;0.0265421562837755!GO:0051287;NAD binding;0.0269290972868187!GO:0043205;fibril;0.0270345477168565!GO:0051049;regulation of transport;0.0280009943279977!GO:0008629;induction of apoptosis by intracellular signals;0.0284150100133362!GO:0005938;cell cortex;0.0284263986997157!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0287840604748087!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0287840604748087!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0287840604748087!GO:0000059;protein import into nucleus, docking;0.0288404369180941!GO:0048306;calcium-dependent protein binding;0.0290371511336138!GO:0009893;positive regulation of metabolic process;0.0291460714891123!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0291460714891123!GO:0015399;primary active transmembrane transporter activity;0.0291460714891123!GO:0043022;ribosome binding;0.0292787484135917!GO:0051270;regulation of cell motility;0.0293023019444866!GO:0030198;extracellular matrix organization and biogenesis;0.0295977448664436!GO:0030286;dynein complex;0.0297492179988136!GO:0045121;lipid raft;0.0297691143411333!GO:0004721;phosphoprotein phosphatase activity;0.0299841745839922!GO:0000302;response to reactive oxygen species;0.0300537511437748!GO:0030139;endocytic vesicle;0.0306987223018729!GO:0031529;ruffle organization and biogenesis;0.0308972718896862!GO:0016584;nucleosome positioning;0.030899566207105!GO:0048154;S100 beta binding;0.030902840932957!GO:0030521;androgen receptor signaling pathway;0.0310973285700339!GO:0031901;early endosome membrane;0.031982518202104!GO:0009100;glycoprotein metabolic process;0.0325392267046143!GO:0000314;organellar small ribosomal subunit;0.0325987319124892!GO:0005763;mitochondrial small ribosomal subunit;0.0325987319124892!GO:0016791;phosphoric monoester hydrolase activity;0.0328196153643562!GO:0022415;viral reproductive process;0.0332090037953986!GO:0045947;negative regulation of translational initiation;0.0334594232611628!GO:0005832;chaperonin-containing T-complex;0.0334854250600636!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0334907944772918!GO:0005159;insulin-like growth factor receptor binding;0.0334907944772918!GO:0005869;dynactin complex;0.0349567154088774!GO:0008307;structural constituent of muscle;0.0361388737867319!GO:0005925;focal adhesion;0.0362472367535284!GO:0030162;regulation of proteolysis;0.0362472367535284!GO:0003746;translation elongation factor activity;0.0365764391343741!GO:0030125;clathrin vesicle coat;0.0370226398190183!GO:0030665;clathrin coated vesicle membrane;0.0370226398190183!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0374156614572309!GO:0048514;blood vessel morphogenesis;0.0374265220135505!GO:0048660;regulation of smooth muscle cell proliferation;0.0375534757146877!GO:0005100;Rho GTPase activator activity;0.0381786846485938!GO:0051098;regulation of binding;0.0381909949727049!GO:0006118;electron transport;0.0382489852890342!GO:0043086;negative regulation of catalytic activity;0.0384423541285507!GO:0006650;glycerophospholipid metabolic process;0.0389494166682181!GO:0017091;AU-rich element binding;0.0396723428319151!GO:0050779;RNA destabilization;0.0396723428319151!GO:0000289;poly(A) tail shortening;0.0396723428319151!GO:0030833;regulation of actin filament polymerization;0.0396723428319151!GO:0006516;glycoprotein catabolic process;0.0396723428319151!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0399062229394087!GO:0006376;mRNA splice site selection;0.0412380330074766!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0412380330074766!GO:0007015;actin filament organization;0.0415134831209509!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0432628585558407!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0432715312125388!GO:0015002;heme-copper terminal oxidase activity;0.0432715312125388!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0432715312125388!GO:0004129;cytochrome-c oxidase activity;0.0432715312125388!GO:0000902;cell morphogenesis;0.0443342601436203!GO:0032989;cellular structure morphogenesis;0.0443342601436203!GO:0060090;molecular adaptor activity;0.0452422965974198!GO:0008637;apoptotic mitochondrial changes;0.0455870330748904!GO:0008147;structural constituent of bone;0.0456069227950895!GO:0008610;lipid biosynthetic process;0.0457262523329184!GO:0000303;response to superoxide;0.0465522501983536!GO:0030433;ER-associated protein catabolic process;0.0470563307655562!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0470563307655562!GO:0044433;cytoplasmic vesicle part;0.0472798431656396!GO:0051262;protein tetramerization;0.0473245498975659!GO:0009266;response to temperature stimulus;0.0473694478448113!GO:0001533;cornified envelope;0.0484465733911732!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0485531453148789!GO:0006611;protein export from nucleus;0.0487653628709503!GO:0046467;membrane lipid biosynthetic process;0.0487654682011233!GO:0051259;protein oligomerization;0.0493383262398962!GO:0051059;NF-kappaB binding;0.0493828353681258!GO:0043034;costamere;0.04961396741479
|sample_id=10029
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=trachea
|top_motifs=TBP:3.8077080293;RFX1:2.37245270169;RFX2..5_RFXANK_RFXAP:2.36963787248;SNAI1..3:2.21565857354;TBX4,5:2.14069014645;TFCP2:2.08731427847;FOX{D1,D2}:2.0433946192;SP1:2.00370086876;FOXA2:1.99137171029;ZEB1:1.92940159578;HBP1_HMGB_SSRP1_UBTF:1.75967509284;IRF7:1.73312524828;MYOD1:1.66249256624;TFAP4:1.65802964804;ZIC1..3:1.63457845802;FOXO1,3,4:1.59709546527;LMO2:1.57275689742;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55978540393;MAZ:1.51420181128;MTF1:1.49967085366;STAT2,4,6:1.48444088437;EP300:1.45098317389;TLX1..3_NFIC{dimer}:1.39043405118;AR:1.34771439634;SOX5:1.3358305404;PATZ1:1.31768847805;TFAP2{A,C}:1.2989960613;FOXN1:1.25996262456;TLX2:1.24243686541;NFATC1..3:1.24043116882;ZNF148:1.22569233289;GLI1..3:1.21182396803;T:1.20701192858;MEF2{A,B,C,D}:1.20689897568;POU2F1..3:1.19484366138;HMX1:1.19275847592;RBPJ:1.1806073792;POU5F1:1.16948575584;ATF6:1.14919277753;XCPE1{core}:1.12023055332;FOXQ1:1.09043563977;SRF:1.06824797074;EBF1:0.995695903412;RXRA_VDR{dimer}:0.974524735746;GTF2I:0.974063977211;ETS1,2:0.949918050147;HIC1:0.894115878504;MYFfamily:0.871038454014;NR1H4:0.846213954715;IKZF1:0.844883783115;ESR1:0.819568595343;SPZ1:0.818836757598;NKX3-2:0.801889740124;SMAD1..7,9:0.766783810633;HAND1,2:0.764669923521;FOXL1:0.74973951112;TEAD1:0.721796331326;GCM1,2:0.706530931253;ZNF423:0.702783084986;IRF1,2:0.692907946226;POU6F1:0.679423283073;GATA4:0.66688007054;FOX{F1,F2,J1}:0.665452215753;TP53:0.657408004586;SOX2:0.654837659455;MED-1{core}:0.645655690554;MZF1:0.640946066748;ELF1,2,4:0.613569051857;MTE{core}:0.545795344598;GTF2A1,2:0.526452525831;TGIF1:0.500767120225;NANOG:0.498409940057;PBX1:0.485668356154;ATF2:0.48164218781;TFAP2B:0.463634198707;PRDM1:0.441623102428;STAT1,3:0.429508404844;RREB1:0.402864279413;PAX5:0.398404376171;HES1:0.39202878834;SPIB:0.376021402408;SPI1:0.362406753126;MYBL2:0.347136971393;JUN:0.317397604675;HNF4A_NR2F1,2:0.316354437393;BPTF:0.301424673618;REST:0.300990731607;HNF1A:0.294195320425;VSX1,2:0.288800573361;HIF1A:0.282506458826;DBP:0.244835802094;FOX{I1,J2}:0.239144129852;NHLH1,2:0.215532624686;HSF1,2:0.211882316948;XBP1:0.203837685664;KLF4:0.179833694508;GFI1B:0.166024765985;EGR1..3:0.138526304822;CDC5L:0.133665364633;GATA6:0.130387466665;CEBPA,B_DDIT3:0.120295243897;FOSL2:0.120043860188;ALX4:0.114192988795;NR3C1:0.111269125462;HLF:0.0604942412936;ZNF238:0.0498894990362;ZFP161:0.035161111834;BREu{core}:0.030621847242;PAX1,9:0.0092829233693;RUNX1..3:-0.0134486829352;ESRRA:-0.0278407945714;SOX{8,9,10}:-0.0399217529977;FOXD3:-0.0522394829273;TAL1_TCF{3,4,12}:-0.073545671841;FOS_FOS{B,L1}_JUN{B,D}:-0.0860250648224;NFIL3:-0.106260216526;CUX2:-0.116680336957;ADNP_IRX_SIX_ZHX:-0.134628075401;NFE2L2:-0.145359106959;NKX2-3_NKX2-5:-0.153540817794;SOX17:-0.184911252917;DMAP1_NCOR{1,2}_SMARC:-0.189721043744;NFKB1_REL_RELA:-0.198897950402;NR5A1,2:-0.21338941882;HOX{A6,A7,B6,B7}:-0.248833122408;CRX:-0.276820081294;NKX2-1,4:-0.289155987038;SREBF1,2:-0.299627677751;NFY{A,B,C}:-0.305391658033;ATF4:-0.337491634203;ATF5_CREB3:-0.34124216137;CREB1:-0.341374975721;ZNF384:-0.356650675676;MAFB:-0.369259089152;ZNF143:-0.378401245197;NFE2:-0.388026118561;BACH2:-0.43647891343;bHLH_family:-0.472600147374;ZBTB6:-0.484487875708;PAX6:-0.520106110663;GFI1:-0.552465287348;PAX2:-0.577134067406;LEF1_TCF7_TCF7L1,2:-0.589679387844;NR6A1:-0.590561942583;HOX{A4,D4}:-0.592310741755;FOXP3:-0.596803864078;GZF1:-0.599193762289;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.607801010622;NRF1:-0.630330478511;NFIX:-0.68335884466;PRRX1,2:-0.689182258687;TEF:-0.727131261139;AIRE:-0.738637594158;OCT4_SOX2{dimer}:-0.791184602334;LHX3,4:-0.80240861068;MYB:-0.80621040802;E2F1..5:-0.810550923452;HMGA1,2:-0.823456926204;RXR{A,B,G}:-0.827082177498;PITX1..3:-0.847764200897;TFDP1:-0.874422193684;PAX3,7:-0.881658866269;FOXP1:-0.882086475466;UFEwm:-0.924782280936;STAT5{A,B}:-0.942963273344;NKX3-1:-0.946912366237;NFE2L1:-0.980760091843;ELK1,4_GABP{A,B1}:-0.983547264534;POU3F1..4:-0.983693791905;ARID5B:-0.999313629574;FOXM1:-1.07948037413;IKZF2:-1.08148105464;PDX1:-1.12900470319;AHR_ARNT_ARNT2:-1.1344970984;NKX6-1,2:-1.22742019709;PPARG:-1.22868090326;NKX2-2,8:-1.26399094346;YY1:-1.28885277521;CDX1,2,4:-1.30848010781;EVI1:-1.31216066447;ALX1:-1.33984651608;NANOG{mouse}:-1.37516273585;TOPORS:-1.41687829177;ZBTB16:-1.43162500061;RORA:-1.48545648061;HOX{A5,B5}:-1.53161541473;POU1F1:-1.5734083357;EN1,2:-1.72172869482;ONECUT1,2:-1.81453302623;HOXA9_MEIS1:-1.8478928139;PAX8:-1.99482815635;PAX4:-2.16456757123
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10029-101E2;search_select_hide=table117:FF:10029-101E2
}}
}}

Latest revision as of 12:15, 3 June 2020

Name:trachea, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10635
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetrachea
dev stage59,72,78 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -20
catalog numberCat:AM6000 Lot:0910061 -20
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005452
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10635 CAGE DRX008753 DRR009625
Accession ID Hg19

Library idBAMCTSS
CNhs10635 DRZ001050 DRZ002435
Accession ID Hg38

Library idBAMCTSS
CNhs10635 DRZ012400 DRZ013785
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0947
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.00354
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.214
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.986
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0301
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0256
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0.0301
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.317
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0846
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0301
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.004
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0691
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.154
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0582
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0683
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.177
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0301
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0301
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0.0441
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0441
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0489
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0.0301
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.0846
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.106
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0474
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.554
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0301
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0582
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0301
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.216
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.291
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.268
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.508
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0846
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.114
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0321
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0582
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.425
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0582
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0846
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0582
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.177
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.0582
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0119
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0301
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.286
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0967
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0301
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0301
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0971
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.0301
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0.0301
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0582
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.11
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.216
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0301
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.177
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.00806
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0846
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0.0301
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0053
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.0301
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.877
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.0301
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0301
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0301
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10635

Jaspar motifP-value
MA0002.20.917
MA0003.10.177
MA0004.10.0843
MA0006.10.0775
MA0007.10.849
MA0009.10.625
MA0014.10.811
MA0017.10.174
MA0018.20.212
MA0019.10.0205
MA0024.10.0885
MA0025.10.453
MA0027.10.718
MA0028.10.00388
MA0029.10.15
MA0030.12.70801e-6
MA0031.10.00407
MA0035.20.711
MA0038.10.904
MA0039.20.0322
MA0040.10.605
MA0041.10.0765
MA0042.10.174
MA0043.10.711
MA0046.10.0451
MA0047.26.62716e-8
MA0048.10.0107
MA0050.10.0452
MA0051.10.044
MA0052.13.49425e-4
MA0055.10.00645
MA0057.10.678
MA0058.10.0382
MA0059.10.0174
MA0060.10.141
MA0061.10.0525
MA0062.20.00371
MA0065.20.499
MA0066.10.284
MA0067.10.12
MA0068.10.076
MA0069.10.373
MA0070.10.889
MA0071.10.0264
MA0072.10.048
MA0073.10.985
MA0074.10.665
MA0076.10.00584
MA0077.10.221
MA0078.10.377
MA0079.20.0719
MA0080.20.00112
MA0081.10.888
MA0083.10.00903
MA0084.10.696
MA0087.10.0741
MA0088.10.0168
MA0090.10.205
MA0091.10.541
MA0092.10.884
MA0093.10.102
MA0099.28.01012e-4
MA0100.10.749
MA0101.10.248
MA0102.20.0956
MA0103.10.00684
MA0104.20.0059
MA0105.16.66095e-4
MA0106.10.567
MA0107.10.322
MA0108.25.73181e-33
MA0111.10.603
MA0112.20.779
MA0113.10.175
MA0114.10.74
MA0115.10.833
MA0116.10.018
MA0117.10.21
MA0119.10.721
MA0122.10.148
MA0124.10.484
MA0125.10.759
MA0131.10.233
MA0135.10.157
MA0136.16.27306e-4
MA0137.21.25788e-6
MA0138.20.191
MA0139.10.599
MA0140.10.158
MA0141.10.164
MA0142.10.723
MA0143.10.836
MA0144.12.96159e-5
MA0145.10.0138
MA0146.10.928
MA0147.10.00309
MA0148.12.09833e-7
MA0149.10.0585
MA0150.10.0187
MA0152.10.948
MA0153.10.00117
MA0154.10.892
MA0155.10.603
MA0156.10.0707
MA0157.10.0892
MA0159.10.854
MA0160.10.228
MA0162.10.709
MA0163.14.84548e-5
MA0164.10.293
MA0258.10.431
MA0259.10.0484



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10635

Novel motifP-value
10.156
100.00786
1000.199
1010.91
1020.89
1030.687
1040.74
1050.476
1060.541
1070.12
1080.985
1090.756
110.342
1100.364
1110.0647
1120.399
1130.621
1140.139
1150.568
1160.205
1170.0869
1180.0892
1190.374
120.908
1200.328
1210.35
1220.421
1230.00333
1240.479
1250.454
1260.126
1270.674
1280.446
1290.347
130.3
1300.611
1310.513
1320.164
1330.00898
1340.0074
1350.0408
1360.813
1370.787
1380.622
1390.47
140.847
1400.207
1410.449
1420.994
1430.114
1440.145
1450.63
1460.0955
1470.452
1480.496
1490.748
150.228
1500.945
1510.668
1520.037
1530.509
1540.485
1550.739
1560.513
1570.619
1580.15
1590.731
160.792
1600.43
1610.195
1620.964
1630.602
1640.0451
1650.27
1660.922
1670.023
1680.0284
1690.339
170.903
180.049
190.698
20.0195
200.147
210.234
220.402
230.302
240.568
250.777
260.325
270.557
280.959
290.0692
30.394
300.00597
310.968
320.975
330.813
340.406
350.133
360.0283
370.504
380.944
390.322
40.287
400.324
410.253
420.579
430.366
440.941
450.0503
460.326
470.259
480.498
490.0652
50.722
500.273
510.528
520.103
530.942
540.986
550.874
560.929
570.101
580.868
590.279
60.328
600.344
610.674
620.631
630.621
640.511
650.896
660.0505
670.393
680.672
690.827
70.976
700.281
710.0681
720.484
730.732
740.324
750.0209
760.0103
770.012
780.0132
790.141
80.687
800.0221
810.217
820.723
830.345
840.839
850.702
860.959
870.618
880.977
890.365
90.233
900.0241
910.439
920.685
930.144
940.0309
950.508
960.636
970.835
980.149
990.31



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10635


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010029 (human trachea - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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