FF:10169-103B7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005564 | |||
|accession_numbers=CAGE;DRX008667;DRR009539;DRZ000964;DRZ002349;DRZ012314;DRZ013699 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.47!295.03!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.42!264.02!TSC22D4;;chr15:80733570..80733659,+!p2@ARNT2!2.24!170.97!ARNT2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!139.96!PEG3;;chr4:81118647..81118666,+!p1@PRDM8!2.08!155.87!PRDM8;;chr17:37764128..37764258,-!p1@NEUROD2!2.05!110.54!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.01!100.20!NEUROD6;;chr9:114287433..114287513,+!p1@ZNF483!1.96!223.46!ZNF483;;chr10:48355030..48355090,+!p1@ZNF488!1.96!113.72!ZNF488;;chr4:57547454..57547469,-!p1@HOPX!1.89!77.14!HOPX;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.75!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.82!64.41!OLIG1;;chr12:106976774..106976788,+!p1@RFX4!1.81!63.62!RFX4;;chr2:2334997..2335053,-!p1@MYT1L!1.78!59.64!MYT1L;;chr14:29235961..29236008,+!p1@FOXG1!1.74!54.08!FOXG1;;chr22:38380543..38380569,-!p1@SOX10!1.73!53.28!SOX10;;chr10:119302232..119302265,+!p1@EMX2!1.69!48.51!EMX2;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.71!RFX4;;chrX:25034067..25034088,-!p1@ARX!1.68!46.92!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.53!SMARCE1;;chr17:53342311..53342400,+!p1@HLF!1.64!48.51!HLF;;chr2:60781201..60781258,-!p3@BCL11A!1.63!42.15!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.62!84.29!C11orf9;;chr14:29234581..29234601,+!p2@FOXG1!1.62!40.56!FOXG1;;chr21:34398234..34398250,+!p1@OLIG2!1.59!38.17!OLIG2;;chrX:85969626..85969664,+!p1@DACH2!1.58!37.38!DACH2;;chr9:77112244..77112262,+!p1@RORB!1.56!38.97!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.55!48.51!PROX1;;chr14:33403881..33403924,+!p1@NPAS3!1.54!33.40!NPAS3;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.40!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.52!54.87!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.52!46.12!CSRNP3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.01!POU3F3;;chr12:26277817..26277863,-!p2@BHLHE41!1.49!40.56!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.35!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!1.47!38.97!TUB;;chr11:31832658..31832681,-!p1@PAX6!1.47!28.63!PAX6;;chr1:244219775..244219893,+!p2@ZNF238!1.46!37.38!ZNF238;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.04!HIF3A;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.04!SOX2;;chr9:126774018..126774055,+!p1@LHX2!1.45!27.04!LHX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.44!68.39!ZFPM2;;chr8:53322304..53322340,-!p1@ST18!1.44!26.24!ST18;;chr8:65492915..65492932,+!p1@BHLHE22!1.42!25.45!BHLHE22;;chr7:63505799..63505904,+!p1@ZNF727!1.41!24.65!ZNF727;;chr15:80696703..80696754,+!p1@ARNT2!1.38!30.22!ARNT2;;chr19:13135582..13135600,+!p3@NFIX!1.38!23.06!NFIX;;chr14:33403648..33403710,+!p3@NPAS3!1.37!22.27!NPAS3;;chr2:162272785..162272836,+!p1@TBR1!1.37!22.27!TBR1;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!19.88!KCNIP3;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.88!HIF3A;;chr8:106330696..106330719,+!p2@ZFPM2!1.31!24.65!ZFPM2;;chr3:114173720..114173794,-!p6@ZBTB20!1.29!18.29!ZBTB20;;chr11:31832862..31832884,-!p2@PAX6!1.29!18.29!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!64.41!BHLHE41;;chr3:147127142..147127168,+!p1@ZIC1!1.27!17.50!ZIC1;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.50!ZIM2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.25!16.70!POU3F3;;chr10:64134120..64134183,+!p1@ZNF365!1.24!19.88!ZNF365;;chr14:29237009..29237049,+!p4@FOXG1!1.23!15.90!FOXG1;;chr4:57522166..57522260,-!p2@HOPX!1.21!17.50!HOPX;;chr17:38219209..38219230,+!p1@THRA!1.19!185.29!THRA;;chr22:41763452..41763466,+!p2@TEF!1.19!14.31!TEF;;chr7:50344289..50344323,+!p1@IKZF1!1.19!14.31!IKZF1;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.31!LHX2;;chr12:103351444..103351461,+!p1@ASCL1!1.19!14.31!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.16!81.11!ID4;;chr11:47400078..47400106,-!p1@SPI1!1.16!13.52!SPI1;;chr12:54779511..54779577,-!p5@ZNF385A!1.16!13.52!ZNF385A;;chr4:57522598..57522664,-!p3@HOPX!1.16!13.52!HOPX;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.88!ZNF540;;chr17:70117153..70117174,+!p1@SOX9!1.14!129.62!SOX9;;chr19:30863271..30863338,+!p1@ZNF536!1.14!12.72!ZNF536;;chr8:65492973..65492989,+!p5@BHLHE22!1.14!12.72!BHLHE22;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.72!SMARCA2;;chr3:141105705..141105770,+!p4@ZBTB38!1.13!15.11!ZBTB38;;chr4:57522674..57522699,-!p5@HOPX!1.11!11.93!HOPX;;chr14:58798013..58798071,+!p2@ARID4A!1.11!11.93!ARID4A;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.93!IRF8;;chr8:22550530..22550609,-!p2@EGR3!1.11!11.93!EGR3;;chr8:53322347..53322378,-!p2@ST18!1.11!11.93!ST18;;chr1:244214577..244214593,+!p1@ZNF238!1.11!11.93!ZNF238;;chr20:3388541..3388575,-!p2@C20orf194!1.10!45.33!C20orf194;;chr3:114819124..114819200,-!p3@ZBTB20!1.10!27.04!ZBTB20;;chr1:151032860..151032918,+!p1@MLLT11!1.08!132.80!MLLT11;;chr21:34442584..34442587,+!p3@OLIG1!1.08!11.13!OLIG1;;chr2:42721205..42721307,+!p4@MTA3!1.08!11.13!MTA3;;chr3:147127177..147127194,+!p2@ZIC1!1.08!11.13!ZIC1;;chr9:126774058..126774081,+!p3@LHX2!1.08!11.13!LHX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.08!11.13!NKX6-2;;chr12:24102576..2410262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V1!0.41!1.59!ETV1;;chr7:20826426..20826432,-!p2@SP8!0.41!1.59!SP8;;chr7:28220506..28220552,-!p3@JAZF1!0.41!1.59!JAZF1;;chr7:73038889..73038905,-!p3@MLXIPL!0.41!1.59!MLXIPL;;chr7:96634850..96634874,+!p3@DLX6!0.41!1.59!DLX6;;chr8:116673894..116673913,-!p12@TRPS1!0.41!1.59!TRPS1;;chr8:22550509..22550526,-!p6@EGR3!0.41!1.59!EGR3;;chr8:22550825..22550844,-!p7@EGR3!0.41!1.59!EGR3;;chr8:28748765..28748785,+!p10@HMBOX1!0.41!1.59!HMBOX1;;chr8:53162037..53162058,-!p5@ST18!0.41!1.59!ST18;;chr8:53166916..53166925,-!p10@ST18!0.41!1.59!ST18;;chr8:53322411..53322422,-!p6@ST18!0.41!1.59!ST18;;chr8:86089498..86089519,+!p6@E2F5!0.41!1.59!E2F5;;chr8:93107451..93107468,-!p2@RUNX1T1!0.41!1.59!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.41!1.59!ZFP37;;chr9:14313641..14313652,-!p13@NFIB!0.41!1.59!NFIB;;chr9:14314642..14314645,-!p16@NFIB!0.41!1.59!NFIB;;chr9:94173193..94173206,-!p5@NFIL3!0.41!1.59!NFIL3;;chrX:84498946..84498955,+!p4@ZNF711!0.41!1.59!ZNF711;;chrX:147582130..147582147,+!p3@AFF2!0.41!1.59!AFF2;;chr9:73028433..73028444,-!p15@KLF9!0.41!1.59!KLF9;;chr14:99738059..99738086,-!p2@BCL11B!0.41!1.59!BCL11B;;chr14:99738138..99738163,-!p1@BCL11B!0.41!1.59!BCL11B;;chr15:61521462..61521482,-!p4@RORA!0.41!1.59!RORA;;chr15:61521495..61521506,-!p5@RORA!0.41!1.59!RORA;;chr15:66994523..66994541,+!p5@SMAD6!0.41!1.59!SMAD6;;chr15:77197723..77197734,-!p4@SCAPER!0.41!1.59!SCAPER;;chr15:80696305..80696320,+!p10@ARNT2!0.41!1.59!ARNT2;;chr15:90544182..90544195,+!p7@ZNF710!0.41!1.59!ZNF710;;chr15:96877047..96877056,+!p39@NR2F2!0.41!1.59!NR2F2;;chr16:51185573..51185593,-!p3@SALL1!0.41!1.59!SALL1;;chr16:54964899..54964914,+!p2@IRX5!0.41!1.59!IRX5;;chr16:79634447..79634462,-!p8@MAF!0.41!1.59!MAF;;chr16:79634464..79634493,-!p5@MAF!0.41!1.59!MAF;;chr16:88752836..88752852,-!p3@SNAI3!0.41!1.59!SNAI3;;chr17:38244601..38244612,+!p6@THRA!0.41!1.59!THRA;;chr17:4883914..4883924,-!p7@CAMTA2!0.41!1.59!CAMTA2;;chr17:53342451..53342471,+!p4@HLF!0.41!1.59!HLF;;chr17:7197911..7197964,-!p1@YBX2!0.41!1.59!YBX2;;chr17:7387459..7387470,-!p10@ZBTB4!0.41!1.59!ZBTB4;;chr18:45935720..45935772,-!p1@ZBTB7C!0.41!1.59!ZBTB7C;;chr18:52969674..52969685,-!p24@TCF4!0.41!1.59!TCF4;;chr18:52988952..52988965,-!p23@TCF4!0.41!1.59!TCF4;;chr18:53068982..53068993,-!p20@TCF4!0.41!1.59!TCF4;;chr18:53069219..53069253,-!p35@TCF4!0.41!1.59!TCF4;;chr18:53069419..53069450,-!p34@TCF4!0.41!1.59!TCF4;;chr18:53253077..53253100,-!p46@TCF4!0.41!1.59!TCF4;;chr18:56532079..56532095,+!p8@ZNF532!0.41!1.59!ZNF532;;chr19:12444399..12444415,-!p5@ZNF563!0.41!1.59!ZNF563;;chr19:13135369..13135375,+!p21@NFIX!0.41!1.59!NFIX;;chr19:13135790..13135804,+!p26@NFIX!0.41!1.59!NFIX;;chr19:13135914..13135942,+!p19@NFIX!0.41!1.59!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.41!1.59!NFIX;;chr19:16435423..16435484,+!p5@KLF2!0.41!1.59!KLF2;;chr19:1863887..1863918,-!p6@KLF16!0.41!1.59!KLF16;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.41!1.59!ZNF676;;chr19:22966925..22966958,-!p1@ZNF99!0.41!1.59!ZNF99;;chr19:30863189..30863200,+!p3@ZNF536!0.41!1.59!ZNF536;;chr19:3359158..3359209,+!p5@NFIC!0.41!1.59!NFIC;;chr19:46801484..46801498,+!p9@HIF3A!0.41!1.59!HIF3A;;chr19:47910182..47910187,-!p3@MEIS3!0.41!1.59!MEIS3;;chr19:54041574..54041589,+!p6@ZNF331!0.41!1.59!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!0.41!1.59!ZNF331;;chr19:57324701..57324716,-!p2@PEG3!0.41!1.59!PEG3;;chr1:114301553..114301576,-!p6@PHTF1!0.41!1.59!PHTF1;;chr1:151032957..151032968,+!p7@MLLT11!0.41!1.59!MLLT11;;chr1:164528866..164528877,+!p12@PBX1!0.41!1.59!PBX1;;chr1:170632683..170632696,+!p12@PRRX1!0.41!1.59!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.41!1.59!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.41!1.59!PRRX1;;chr1:212873084..212873137,-!p2@BATF3!0.41!1.59!BATF3;;chr1:212873162..212873188,-!p3@BATF3!0.41!1.59!BATF3;; | |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.47!295.03!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.42!264.02!TSC22D4;;chr15:80733570..80733659,+!p2@ARNT2!2.24!170.97!ARNT2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!139.96!PEG3;;chr4:81118647..81118666,+!p1@PRDM8!2.08!155.87!PRDM8;;chr17:37764128..37764258,-!p1@NEUROD2!2.05!110.54!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.01!100.20!NEUROD6;;chr9:114287433..114287513,+!p1@ZNF483!1.96!223.46!ZNF483;;chr10:48355030..48355090,+!p1@ZNF488!1.96!113.72!ZNF488;;chr4:57547454..57547469,-!p1@HOPX!1.89!77.14!HOPX;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.75!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.82!64.41!OLIG1;;chr12:106976774..106976788,+!p1@RFX4!1.81!63.62!RFX4;;chr2:2334997..2335053,-!p1@MYT1L!1.78!59.64!MYT1L;;chr14:29235961..29236008,+!p1@FOXG1!1.74!54.08!FOXG1;;chr22:38380543..38380569,-!p1@SOX10!1.73!53.28!SOX10;;chr10:119302232..119302265,+!p1@EMX2!1.69!48.51!EMX2;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.71!RFX4;;chrX:25034067..25034088,-!p1@ARX!1.68!46.92!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.53!SMARCE1;;chr17:53342311..53342400,+!p1@HLF!1.64!48.51!HLF;;chr2:60781201..60781258,-!p3@BCL11A!1.63!42.15!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.62!84.29!C11orf9;;chr14:29234581..29234601,+!p2@FOXG1!1.62!40.56!FOXG1;;chr21:34398234..34398250,+!p1@OLIG2!1.59!38.17!OLIG2;;chrX:85969626..85969664,+!p1@DACH2!1.58!37.38!DACH2;;chr9:77112244..77112262,+!p1@RORB!1.56!38.97!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.55!48.51!PROX1;;chr14:33403881..33403924,+!p1@NPAS3!1.54!33.40!NPAS3;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.40!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.52!54.87!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.52!46.12!CSRNP3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.01!POU3F3;;chr12:26277817..26277863,-!p2@BHLHE41!1.49!40.56!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.35!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!1.47!38.97!TUB;;chr11:31832658..31832681,-!p1@PAX6!1.47!28.63!PAX6;;chr1:244219775..244219893,+!p2@ZNF238!1.46!37.38!ZNF238;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.04!HIF3A;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.04!SOX2;;chr9:126774018..126774055,+!p1@LHX2!1.45!27.04!LHX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.44!68.39!ZFPM2;;chr8:53322304..53322340,-!p1@ST18!1.44!26.24!ST18;;chr8:65492915..65492932,+!p1@BHLHE22!1.42!25.45!BHLHE22;;chr7:63505799..63505904,+!p1@ZNF727!1.41!24.65!ZNF727;;chr15:80696703..80696754,+!p1@ARNT2!1.38!30.22!ARNT2;;chr19:13135582..13135600,+!p3@NFIX!1.38!23.06!NFIX;;chr14:33403648..33403710,+!p3@NPAS3!1.37!22.27!NPAS3;;chr2:162272785..162272836,+!p1@TBR1!1.37!22.27!TBR1;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!19.88!KCNIP3;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.88!HIF3A;;chr8:106330696..106330719,+!p2@ZFPM2!1.31!24.65!ZFPM2;;chr3:114173720..114173794,-!p6@ZBTB20!1.29!18.29!ZBTB20;;chr11:31832862..31832884,-!p2@PAX6!1.29!18.29!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!64.41!BHLHE41;;chr3:147127142..147127168,+!p1@ZIC1!1.27!17.50!ZIC1;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.50!ZIM2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.25!16.70!POU3F3;;chr10:64134120..64134183,+!p1@ZNF365!1.24!19.88!ZNF365;;chr14:29237009..29237049,+!p4@FOXG1!1.23!15.90!FOXG1;;chr4:57522166..57522260,-!p2@HOPX!1.21!17.50!HOPX;;chr17:38219209..38219230,+!p1@THRA!1.19!185.29!THRA;;chr22:41763452..41763466,+!p2@TEF!1.19!14.31!TEF;;chr7:50344289..50344323,+!p1@IKZF1!1.19!14.31!IKZF1;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.31!LHX2;;chr12:103351444..103351461,+!p1@ASCL1!1.19!14.31!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.16!81.11!ID4;;chr11:47400078..47400106,-!p1@SPI1!1.16!13.52!SPI1;;chr12:54779511..54779577,-!p5@ZNF385A!1.16!13.52!ZNF385A;;chr4:57522598..57522664,-!p3@HOPX!1.16!13.52!HOPX;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.88!ZNF540;;chr17:70117153..70117174,+!p1@SOX9!1.14!129.62!SOX9;;chr19:30863271..30863338,+!p1@ZNF536!1.14!12.72!ZNF536;;chr8:65492973..65492989,+!p5@BHLHE22!1.14!12.72!BHLHE22;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.72!SMARCA2;;chr3:141105705..141105770,+!p4@ZBTB38!1.13!15.11!ZBTB38;;chr4:57522674..57522699,-!p5@HOPX!1.11!11.93!HOPX;;chr14:58798013..58798071,+!p2@ARID4A!1.11!11.93!ARID4A;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.93!IRF8;;chr8:22550530..22550609,-!p2@EGR3!1.11!11.93!EGR3;;chr8:53322347..53322378,-!p2@ST18!1.11!11.93!ST18;;chr1:244214577..244214593,+!p1@ZNF238!1.11!11.93!ZNF238;;chr20:3388541..3388575,-!p2@C20orf194!1.10!45.33!C20orf194;;chr3:114819124..114819200,-!p3@ZBTB20!1.10!27.04!ZBTB20;;chr1:151032860..151032918,+!p1@MLLT11!1.08!132.80!MLLT11;;chr21:34442584..34442587,+!p3@OLIG1!1.08!11.13!OLIG1;;chr2:42721205..42721307,+!p4@MTA3!1.08!11.13!MTA3;;chr3:147127177..147127194,+!p2@ZIC1!1.08!11.13!ZIC1;;chr9:126774058..126774081,+!p3@LHX2!1.08!11.13!LHX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.08!11.13!NKX6-2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.13!SOX5;;chr8:40755333..40755352,-!p1@ZMAT4!1.08!11.13!ZMAT4;;chr16:67198633..67198671,+!p1@HSF4!1.08!11.13!HSF4;;chr14:73360799..73360817,-!p1@DPF3!1.07!37.38!DPF3;;chr17:7492684..7492778,-!p2@SOX15!1.07!23.06!SOX15;;chr20:62680984..62680999,-!p1@SOX18!1.07!14.31!SOX18;;chr17:38219143..38219154,+!p2@THRA!1.06!37.38!THRA;;chr1:170632285..170632309,+!p1@PRRX1!1.06!11.93!PRRX1;;chr19:38720294..38720348,-!p1@DPF1!1.05!12.72!DPF1;;chr3:126076242..126076257,-!p1@KLF15!1.05!12.72!KLF15;;chr2:2335070..2335098,-!p4@MYT1L!1.05!10.34!MYT1L;;chr2:2335109..2335134,-!p2@MYT1L!1.05!10.34!MYT1L;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.05!10.34!ZBED1;;chr9:2159800..2159825,+!p15@SMARCA2!1.05!10.34!SMARCA2;;chr11:125034640..125034655,+!p1@PKNOX2!1.05!10.34!PKNOX2;;chr9:124976328..124976372,-!p2@LHX6!1.05!10.34!LHX6;;chr1:61548069..61548102,+!p3@NFIA!1.04!24.65!NFIA;;chrX:118739835..118739862,-!p1@NKRF!1.04!11.13!NKRF;;chr5:92920256..92920282,+!p7@NR2F1!1.03!11.93!NR2F1;;chr5:124082322..124082364,-!p1@ZNF608!1.02!24.65!ZNF608;;chr12:26277929..26277955,-!p3@BHLHE41!1.02!13.52!BHLHE41;;chr14:33408072..33408114,+!p2@NPAS3!1.02!11.13!NPAS3;;chr11:85393886..85393913,-!p3@CREBZF!1.02!9.54!CREBZF;;chrX:147582254..147582320,+!p1@AFF2!1.02!9.54!AFF2;;chr2:182545234..182545252,-!p1@NEUROD1!1.02!9.54!NEUROD1;;chr3:141105235..141105307,+!p7@ZBTB38!1.02!9.54!ZBTB38;;chr16:51185318..51185348,-!p2@SALL1!1.02!9.54!SALL1;;chr19:13135386..13135435,+!p4@NFIX!1.02!9.54!NFIX;;chr7:115670804..115670825,-!p1@TFEC!1.02!9.54!TFEC;;chr6:126112039..126112062,+!p8@NCOA7!1.01!11.13!NCOA7;;chr9:14314131..14314147,-!p2@NFIB!1.00!50.89!NFIB;;chr19:21512202..21512225,-!p1@ZNF708!1.00!46.92!ZNF708;;chr2:60780607..60780624,-!p2@BCL11A!0.99!27.83!BCL11A;;chr19:53636125..53636178,-!p1@ZNF415!0.99!25.45!ZNF415;;chr19:58545454..58545498,+!p1@ZSCAN1!0.99!8.75!ZSCAN1;;chr15:31658288..31658338,+!p4@KLF13!0.99!8.75!KLF13;;chr15:80696836..80696853,+!p7@ARNT2!0.99!8.75!ARNT2;;chr11:31832807..31832823,-!p4@PAX6!0.99!8.75!PAX6;;chr14:29236269..29236285,+!p3@FOXG1!0.99!8.75!FOXG1;;chr2:2328299..2328363,-!p3@MYT1L!0.99!8.75!MYT1L;;chr3:187463179..187463201,-!p2@BCL6!0.98!36.58!BCL6;;chr19:13134772..13134822,+!p2@NFIX!0.98!12.72!NFIX;;chr11:8102819..8102845,+!p3@TUB!0.97!10.34!TUB;;chr8:80680024..80680046,-!p2@HEY1!0.97!9.54!HEY1;;chr18:53068911..53068935,-!p4@TCF4!0.97!9.54!TCF4;;chr6:126112074..126112144,+!p1@NCOA7!0.96!112.13!NCOA7;;chr17:4890919..4890985,-!p1@CAMTA2!0.96!77.93!CAMTA2;;chr5:88178983..88179012,-!p1@MEF2C!0.96!64.41!MEF2C;;chr1:151032782..151032801,+!p4@MLLT11!0.96!16.70!MLLT11;;chr18:53254566..53254567,-!p8@TCF4!0.96!13.52!TCF4;;chr12:24715376..24715432,-!p1@SOX5!0.96!10.34!SOX5;;chr8:116681247..116681261,-!p8@TRPS1!0.95!10.34!TRPS1;;chr10:119302268..119302282,+!p4@EMX2!0.95!7.95!EMX2;;chr12:106976656..106976672,+!p4@RFX4!0.95!7.95!RFX4;;chr2:113057501..113057529,+!p4@ZC3H6!0.95!7.95!ZC3H6;;chr2:24714729..24714761,+!p1@NCOA1!0.95!7.95!NCOA1;;chr2:73520667..73520683,-!p1@EGR4!0.95!7.95!EGR4;;chr1:165414325..165414369,-!p1@RXRG!0.95!7.95!RXRG;;chr20:42544782..42544828,+!p4@TOX2!0.95!7.95!TOX2;;chrX:118739782..118739829,-!p2@NKRF!0.95!7.95!NKRF;;chrX:84498989..84499003,+!p1@ZNF711!0.93!10.34!ZNF711;;chr9:3525867..3525902,-!p3@RFX3!0.92!26.24!RFX3;;chr5:178368186..178368238,+!p1@ZNF454!0.92!13.52!ZNF454;;chr2:145282041..145282092,-!p8@ZEB2!0.92!11.13!ZEB2;;chr7:86781858..86781879,+!p3@DMTF1!0.91!11.93!DMTF1;;chr3:33482052..33482116,-!p2@UBP1!0.91!11.13!UBP1;;chr13:46549911..46549956,-!p3@ZC3H13!0.91!10.34!ZC3H13;;chr10:64133862..64133884,+!p4@ZNF365!0.91!7.16!ZNF365;;chr11:113930401..113930422,+!p3@ZBTB16!0.91!7.16!ZBTB16;;chr2:95963120..95963136,+!p2@KCNIP3!0.91!7.16!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!0.91!7.16!RBPJ;;chr4:57547751..57547764,-!p6@HOPX!0.91!7.16!HOPX;;chr16:1031762..1031781,+!p1@SOX8!0.91!7.16!SOX8;;chr9:124991204..124991246,-!p1@LHX6!0.91!7.16!LHX6;;chr8:145560111..145560165,-!p2@SCRT1!0.91!7.16!SCRT1;;chr8:30890810..30890880,-!p1@PURG!0.91!7.16!PURG;;chr19:7580549..7580596,+!p3@ZNF358!0.91!7.16!ZNF358;;chr1:40105299..40105326,-!p1@HEYL!0.91!7.16!HEYL;;chr1:61548225..61548299,+!p1@NFIA!0.90!96.22!NFIA;;chr4:206390..206444,+!p1@ZNF876P!0.90!12.72!ZNF876P;;chr8:80679993..80680011,-!p1@HEY1!0.90!10.34!HEY1;;chr1:41827095..41827155,+!p1@FOXO6!0.90!9.54!FOXO6;;chr7:14029283..14029311,-!p1@ETV1!0.89!38.17!ETV1;;chr6:126070769..126070801,+!p1@HEY2!0.89!7.95!HEY2;;chr1:8585945..8586056,-!p3@RERE!0.88!23.06!RERE;;chr1:61547894..61547968,+!p2@NFIA!0.88!19.88!NFIA;;chr19:56988677..56988729,-!p1@ZNF667!0.88!11.93!ZNF667;;chr12:54785074..54785122,-!p2@ZNF385A!0.88!10.34!ZNF385A;;chr2:113057415..113057477,+!p3@ZC3H6!0.88!8.75!ZC3H6;;chr2:145277640..145277771,-!p1@ZEB2!0.87!91.45!ZEB2;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.22!NR2F1;;chr1:151032833..151032850,+!p3@MLLT11!0.87!15.11!MLLT11;;chr19:9879350..9879419,-!p2@ZNF846!0.87!14.31!ZNF846;;chr7:64023410..64023428,-!p2@ZNF680!0.87!10.34!ZNF680;;chr1:116383738..116383752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V1!0.41!1.59!ETV1;;chr7:20826426..20826432,-!p2@SP8!0.41!1.59!SP8;;chr7:28220506..28220552,-!p3@JAZF1!0.41!1.59!JAZF1;;chr7:73038889..73038905,-!p3@MLXIPL!0.41!1.59!MLXIPL;;chr7:96634850..96634874,+!p3@DLX6!0.41!1.59!DLX6;;chr8:116673894..116673913,-!p12@TRPS1!0.41!1.59!TRPS1;;chr8:22550509..22550526,-!p6@EGR3!0.41!1.59!EGR3;;chr8:22550825..22550844,-!p7@EGR3!0.41!1.59!EGR3;;chr8:28748765..28748785,+!p10@HMBOX1!0.41!1.59!HMBOX1;;chr8:53162037..53162058,-!p5@ST18!0.41!1.59!ST18;;chr8:53166916..53166925,-!p10@ST18!0.41!1.59!ST18;;chr8:53322411..53322422,-!p6@ST18!0.41!1.59!ST18;;chr8:86089498..86089519,+!p6@E2F5!0.41!1.59!E2F5;;chr8:93107451..93107468,-!p2@RUNX1T1!0.41!1.59!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.41!1.59!ZFP37;;chr9:14313641..14313652,-!p13@NFIB!0.41!1.59!NFIB;;chr9:14314642..14314645,-!p16@NFIB!0.41!1.59!NFIB;;chr9:94173193..94173206,-!p5@NFIL3!0.41!1.59!NFIL3;;chrX:84498946..84498955,+!p4@ZNF711!0.41!1.59!ZNF711;;chrX:147582130..147582147,+!p3@AFF2!0.41!1.59!AFF2;;chr9:73028433..73028444,-!p15@KLF9!0.41!1.59!KLF9;;chr14:99738059..99738086,-!p2@BCL11B!0.41!1.59!BCL11B;;chr14:99738138..99738163,-!p1@BCL11B!0.41!1.59!BCL11B;;chr15:61521462..61521482,-!p4@RORA!0.41!1.59!RORA;;chr15:61521495..61521506,-!p5@RORA!0.41!1.59!RORA;;chr15:66994523..66994541,+!p5@SMAD6!0.41!1.59!SMAD6;;chr15:77197723..77197734,-!p4@SCAPER!0.41!1.59!SCAPER;;chr15:80696305..80696320,+!p10@ARNT2!0.41!1.59!ARNT2;;chr15:90544182..90544195,+!p7@ZNF710!0.41!1.59!ZNF710;;chr15:96877047..96877056,+!p39@NR2F2!0.41!1.59!NR2F2;;chr16:51185573..51185593,-!p3@SALL1!0.41!1.59!SALL1;;chr16:54964899..54964914,+!p2@IRX5!0.41!1.59!IRX5;;chr16:79634447..79634462,-!p8@MAF!0.41!1.59!MAF;;chr16:79634464..79634493,-!p5@MAF!0.41!1.59!MAF;;chr16:88752836..88752852,-!p3@SNAI3!0.41!1.59!SNAI3;;chr17:38244601..38244612,+!p6@THRA!0.41!1.59!THRA;;chr17:4883914..4883924,-!p7@CAMTA2!0.41!1.59!CAMTA2;;chr17:53342451..53342471,+!p4@HLF!0.41!1.59!HLF;;chr17:7197911..7197964,-!p1@YBX2!0.41!1.59!YBX2;;chr17:7387459..7387470,-!p10@ZBTB4!0.41!1.59!ZBTB4;;chr18:45935720..45935772,-!p1@ZBTB7C!0.41!1.59!ZBTB7C;;chr18:52969674..52969685,-!p24@TCF4!0.41!1.59!TCF4;;chr18:52988952..52988965,-!p23@TCF4!0.41!1.59!TCF4;;chr18:53068982..53068993,-!p20@TCF4!0.41!1.59!TCF4;;chr18:53069219..53069253,-!p35@TCF4!0.41!1.59!TCF4;;chr18:53069419..53069450,-!p34@TCF4!0.41!1.59!TCF4;;chr18:53253077..53253100,-!p46@TCF4!0.41!1.59!TCF4;;chr18:56532079..56532095,+!p8@ZNF532!0.41!1.59!ZNF532;;chr19:12444399..12444415,-!p5@ZNF563!0.41!1.59!ZNF563;;chr19:13135369..13135375,+!p21@NFIX!0.41!1.59!NFIX;;chr19:13135790..13135804,+!p26@NFIX!0.41!1.59!NFIX;;chr19:13135914..13135942,+!p19@NFIX!0.41!1.59!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.41!1.59!NFIX;;chr19:16435423..16435484,+!p5@KLF2!0.41!1.59!KLF2;;chr19:1863887..1863918,-!p6@KLF16!0.41!1.59!KLF16;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.41!1.59!ZNF676;;chr19:22966925..22966958,-!p1@ZNF99!0.41!1.59!ZNF99;;chr19:30863189..30863200,+!p3@ZNF536!0.41!1.59!ZNF536;;chr19:3359158..3359209,+!p5@NFIC!0.41!1.59!NFIC;;chr19:46801484..46801498,+!p9@HIF3A!0.41!1.59!HIF3A;;chr19:47910182..47910187,-!p3@MEIS3!0.41!1.59!MEIS3;;chr19:54041574..54041589,+!p6@ZNF331!0.41!1.59!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!0.41!1.59!ZNF331;;chr19:57324701..57324716,-!p2@PEG3!0.41!1.59!PEG3;;chr1:114301553..114301576,-!p6@PHTF1!0.41!1.59!PHTF1;;chr1:151032957..151032968,+!p7@MLLT11!0.41!1.59!MLLT11;;chr1:164528866..164528877,+!p12@PBX1!0.41!1.59!PBX1;;chr1:170632683..170632696,+!p12@PRRX1!0.41!1.59!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.41!1.59!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.41!1.59!PRRX1;;chr1:212873084..212873137,-!p2@BATF3!0.41!1.59!BATF3;;chr1:212873162..212873188,-!p3@BATF3!0.41!1.59!BATF3;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002421;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10169-103B7 | |id=FF:10169-103B7 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0010153 | |is_a=EFO:0002091;;FF:0000210;;FF:0010153 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13795 | |||
|library_id_phase_based=2:CNhs13795 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10169 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10169 | |||
|name=hippocampus - adult, donor10196 | |name=hippocampus - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 47: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.127060011035172,0.254120022070344,0,-0.160318030086386,0.413376786607389,0.136014654413875,0.527824031535301,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.206688393303695,0,0.156162125802287,0,0,0.734029638217867,0,0,0,0,0,0,0,0,0,0,0,0,-0.106388929871896,0.254120022070344,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.761279530076886,0.254120022070344,0.151587918777325,0.413376786607389,0.664287168834281,0,0,0.156776394857247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254120022070344,0,0.069074474317705,0,0.152029654817501,0.425101580146361,0.719606238386357,0,0.159318001079203,0.349931430742822,0.222295711302496,0,0,0,0,-0.0980353512377064,0.209969463099176,0,0,0,0,0,0,0.254120022070344,0,0,0,0,0,0,0,0,0,0,0.168449941789731,0.254120022070344,0,0,0,-0.182575461747543,0.254120022070344,0,0,0.391356424544176,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 78: | ||
|rna_weight_ug=67.581 | |rna_weight_ug=67.581 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 100: | ||
|top_motifs=HOXA9_MEIS1:4.43181532831;DBP:4.41469385575;CUX2:3.6507204194;HBP1_HMGB_SSRP1_UBTF:3.54237774868;REST:3.27086878711;NHLH1,2:3.20857854082;RFX1:3.0222917727;PRRX1,2:3.01454227823;MYFfamily:3.01130765603;RREB1:2.99938305888;ZFP161:2.98423557951;ZBTB6:2.95218217759;OCT4_SOX2{dimer}:2.93542437119;AHR_ARNT_ARNT2:2.93232965709;FOXD3:2.8458488298;NKX3-2:2.74289912872;RFX2..5_RFXANK_RFXAP:2.73814406247;MED-1{core}:2.68497493035;EGR1..3:2.65397055765;POU5F1:2.63281725279;SOX5:2.58807796636;PRDM1:2.51625407745;ATF2:2.46115305484;NFIX:2.42012028109;GATA4:2.3328303196;MTE{core}:2.32017909279;POU6F1:2.29068499816;MTF1:2.2395560523;HOX{A4,D4}:2.22379718243;HMGA1,2:2.20966780203;GTF2I:2.19435322692;SOX2:2.10786764525;PAX4:2.0415033191;KLF4:2.03600154971;GFI1B:2.02014219899;MZF1:1.99751882374;NANOG:1.79831767448;FOXM1:1.76425797432;FOXP1:1.75802828465;ZNF384:1.75325069526;TFAP2B:1.74633887592;TGIF1:1.71342901255;NKX2-3_NKX2-5:1.71317159724;IKZF2:1.67986817553;NKX6-1,2:1.67141972276;SMAD1..7,9:1.65097869057;JUN:1.63911981631;FOXP3:1.63285503443;PAX6:1.63113101331;SOX17:1.62030492286;HAND1,2:1.61385546328;HIC1:1.59848504175;BREu{core}:1.55764149816;PAX5:1.52649661338;NRF1:1.52047668899;ARID5B:1.50525147732;LMO2:1.47751370554;FOX{F1,F2,J1}:1.45302499683;SOX{8,9,10}:1.39533225261;MAFB:1.37474501865;ZBTB16:1.35240418755;CDC5L:1.33085296005;PATZ1:1.27315298796;LEF1_TCF7_TCF7L1,2:1.26963205856;MAZ:1.24060650181;ZIC1..3:1.13565970631;ADNP_IRX_SIX_ZHX:1.02530642918;XBP1:0.974824397279;POU1F1:0.970835684899;POU3F1..4:0.946679429666;STAT2,4,6:0.917640060499;LHX3,4:0.91205706008;BPTF:0.900640029424;TFDP1:0.884889495263;HOX{A6,A7,B6,B7}:0.775186268496;TEF:0.696096689509;FOXA2:0.643047255163;T:0.630897478929;MYBL2:0.627410034557;NR3C1:0.613484183046;HMX1:0.613398244953;CREB1:0.57345786705;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.558793861088;TLX1..3_NFIC{dimer}:0.524414979394;EBF1:0.52267511261;IRF7:0.513422449885;SP1:0.474411774038;SREBF1,2:0.46194429804;ONECUT1,2:0.436202437099;STAT1,3:0.435738370332;ESRRA:0.427155479431;EP300:0.39714503426;SPZ1:0.396748315115;ZNF143:0.394861069206;ZEB1:0.393040133607;RBPJ:0.370015455436;FOXQ1:0.368727754414;GTF2A1,2:0.348908032511;FOXN1:0.312929809805;AR:0.311770988372;FOXL1:0.294165878547;TLX2:0.292586943532;MEF2{A,B,C,D}:0.28441664751;ZNF423:0.282640774031;CRX:0.270921679253;YY1:0.268134606968;TFAP2{A,C}:0.252382114836;NFIL3:0.231804622751;VSX1,2:0.228837827837;GFI1:0.20569327778;DMAP1_NCOR{1,2}_SMARC:0.199096319843;PBX1:0.197870545857;MYOD1:0.188424243214;UFEwm:0.177614816832;GZF1:0.17251903218;ATF5_CREB3:0.148323902051;GCM1,2:0.138265014162;RORA:0.11564728535;NKX3-1:0.115109294487;FOX{I1,J2}:0.0698296768759;IKZF1:0.0251398819228;PAX1,9:-0.00198209811956;FOX{D1,D2}:-0.0348154805785;IRF1,2:-0.0468676830312;CEBPA,B_DDIT3:-0.118168688375;PDX1:-0.169079486511;NFATC1..3:-0.172954842795;PAX2:-0.17541068566;PAX3,7:-0.184873762626;NFE2L2:-0.186707699771;ATF4:-0.243148986005;ATF6:-0.275788481709;EVI1:-0.298745052867;TOPORS:-0.300484206959;NANOG{mouse}:-0.335871905332;PITX1..3:-0.354369391664;SPI1:-0.376429182578;ALX1:-0.378124728353;TBX4,5:-0.417117280777;NFY{A,B,C}:-0.485731790565;ZNF238:-0.486707067672;FOXO1,3,4:-0.494952982418;SPIB:-0.496857855374;NFE2:-0.510923762723;GATA6:-0.521728290866;NFE2L1:-0.579717536781;SNAI1..3:-0.673836721779;PAX8:-0.683372009275;AIRE:-0.721763768454;TBP:-0.769804363592;FOSL2:-0.814600345799;HIF1A:-0.878274214102;HNF1A:-0.906622562623;ETS1,2:-0.942918724821;HNF4A_NR2F1,2:-0.944878276652;FOS_FOS{B,L1}_JUN{B,D}:-0.948916110657;POU2F1..3:-0.953871355345;CDX1,2,4:-0.965808782601;MYB:-0.984162687752;BACH2:-0.990588092361;bHLH_family:-0.994535367198;TAL1_TCF{3,4,12}:-1.03260379178;TFCP2:-1.09693134787;TEAD1:-1.10220945064;XCPE1{core}:-1.12824352318;TP53:-1.13531064672;RUNX1..3:-1.15982843922;NKX2-2,8:-1.17514907902;NKX2-1,4:-1.20233249093;ZNF148:-1.21846559137;HSF1,2:-1.27670685281;HLF:-1.28936784463;NFKB1_REL_RELA:-1.30629911172;E2F1..5:-1.33926639794;NR5A1,2:-1.46137211622;NR6A1:-1.49391468465;RXRA_VDR{dimer}:-1.50002645789;TFAP4:-1.51444314178;ELF1,2,4:-1.51638115945;ELK1,4_GABP{A,B1}:-1.5472042377;SRF:-1.57951391243;RXR{A,B,G}:-1.66260375067;GLI1..3:-1.69003448172;ESR1:-1.74747544066;NR1H4:-1.77476640753;HOX{A5,B5}:-1.7937345181;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.82911616627;ALX4:-1.83269162819;HES1:-2.13986257961;EN1,2:-2.21640521474;PPARG:-2.33120160387;STAT5{A,B}:-2.74150282507 | |top_motifs=HOXA9_MEIS1:4.43181532831;DBP:4.41469385575;CUX2:3.6507204194;HBP1_HMGB_SSRP1_UBTF:3.54237774868;REST:3.27086878711;NHLH1,2:3.20857854082;RFX1:3.0222917727;PRRX1,2:3.01454227823;MYFfamily:3.01130765603;RREB1:2.99938305888;ZFP161:2.98423557951;ZBTB6:2.95218217759;OCT4_SOX2{dimer}:2.93542437119;AHR_ARNT_ARNT2:2.93232965709;FOXD3:2.8458488298;NKX3-2:2.74289912872;RFX2..5_RFXANK_RFXAP:2.73814406247;MED-1{core}:2.68497493035;EGR1..3:2.65397055765;POU5F1:2.63281725279;SOX5:2.58807796636;PRDM1:2.51625407745;ATF2:2.46115305484;NFIX:2.42012028109;GATA4:2.3328303196;MTE{core}:2.32017909279;POU6F1:2.29068499816;MTF1:2.2395560523;HOX{A4,D4}:2.22379718243;HMGA1,2:2.20966780203;GTF2I:2.19435322692;SOX2:2.10786764525;PAX4:2.0415033191;KLF4:2.03600154971;GFI1B:2.02014219899;MZF1:1.99751882374;NANOG:1.79831767448;FOXM1:1.76425797432;FOXP1:1.75802828465;ZNF384:1.75325069526;TFAP2B:1.74633887592;TGIF1:1.71342901255;NKX2-3_NKX2-5:1.71317159724;IKZF2:1.67986817553;NKX6-1,2:1.67141972276;SMAD1..7,9:1.65097869057;JUN:1.63911981631;FOXP3:1.63285503443;PAX6:1.63113101331;SOX17:1.62030492286;HAND1,2:1.61385546328;HIC1:1.59848504175;BREu{core}:1.55764149816;PAX5:1.52649661338;NRF1:1.52047668899;ARID5B:1.50525147732;LMO2:1.47751370554;FOX{F1,F2,J1}:1.45302499683;SOX{8,9,10}:1.39533225261;MAFB:1.37474501865;ZBTB16:1.35240418755;CDC5L:1.33085296005;PATZ1:1.27315298796;LEF1_TCF7_TCF7L1,2:1.26963205856;MAZ:1.24060650181;ZIC1..3:1.13565970631;ADNP_IRX_SIX_ZHX:1.02530642918;XBP1:0.974824397279;POU1F1:0.970835684899;POU3F1..4:0.946679429666;STAT2,4,6:0.917640060499;LHX3,4:0.91205706008;BPTF:0.900640029424;TFDP1:0.884889495263;HOX{A6,A7,B6,B7}:0.775186268496;TEF:0.696096689509;FOXA2:0.643047255163;T:0.630897478929;MYBL2:0.627410034557;NR3C1:0.613484183046;HMX1:0.613398244953;CREB1:0.57345786705;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.558793861088;TLX1..3_NFIC{dimer}:0.524414979394;EBF1:0.52267511261;IRF7:0.513422449885;SP1:0.474411774038;SREBF1,2:0.46194429804;ONECUT1,2:0.436202437099;STAT1,3:0.435738370332;ESRRA:0.427155479431;EP300:0.39714503426;SPZ1:0.396748315115;ZNF143:0.394861069206;ZEB1:0.393040133607;RBPJ:0.370015455436;FOXQ1:0.368727754414;GTF2A1,2:0.348908032511;FOXN1:0.312929809805;AR:0.311770988372;FOXL1:0.294165878547;TLX2:0.292586943532;MEF2{A,B,C,D}:0.28441664751;ZNF423:0.282640774031;CRX:0.270921679253;YY1:0.268134606968;TFAP2{A,C}:0.252382114836;NFIL3:0.231804622751;VSX1,2:0.228837827837;GFI1:0.20569327778;DMAP1_NCOR{1,2}_SMARC:0.199096319843;PBX1:0.197870545857;MYOD1:0.188424243214;UFEwm:0.177614816832;GZF1:0.17251903218;ATF5_CREB3:0.148323902051;GCM1,2:0.138265014162;RORA:0.11564728535;NKX3-1:0.115109294487;FOX{I1,J2}:0.0698296768759;IKZF1:0.0251398819228;PAX1,9:-0.00198209811956;FOX{D1,D2}:-0.0348154805785;IRF1,2:-0.0468676830312;CEBPA,B_DDIT3:-0.118168688375;PDX1:-0.169079486511;NFATC1..3:-0.172954842795;PAX2:-0.17541068566;PAX3,7:-0.184873762626;NFE2L2:-0.186707699771;ATF4:-0.243148986005;ATF6:-0.275788481709;EVI1:-0.298745052867;TOPORS:-0.300484206959;NANOG{mouse}:-0.335871905332;PITX1..3:-0.354369391664;SPI1:-0.376429182578;ALX1:-0.378124728353;TBX4,5:-0.417117280777;NFY{A,B,C}:-0.485731790565;ZNF238:-0.486707067672;FOXO1,3,4:-0.494952982418;SPIB:-0.496857855374;NFE2:-0.510923762723;GATA6:-0.521728290866;NFE2L1:-0.579717536781;SNAI1..3:-0.673836721779;PAX8:-0.683372009275;AIRE:-0.721763768454;TBP:-0.769804363592;FOSL2:-0.814600345799;HIF1A:-0.878274214102;HNF1A:-0.906622562623;ETS1,2:-0.942918724821;HNF4A_NR2F1,2:-0.944878276652;FOS_FOS{B,L1}_JUN{B,D}:-0.948916110657;POU2F1..3:-0.953871355345;CDX1,2,4:-0.965808782601;MYB:-0.984162687752;BACH2:-0.990588092361;bHLH_family:-0.994535367198;TAL1_TCF{3,4,12}:-1.03260379178;TFCP2:-1.09693134787;TEAD1:-1.10220945064;XCPE1{core}:-1.12824352318;TP53:-1.13531064672;RUNX1..3:-1.15982843922;NKX2-2,8:-1.17514907902;NKX2-1,4:-1.20233249093;ZNF148:-1.21846559137;HSF1,2:-1.27670685281;HLF:-1.28936784463;NFKB1_REL_RELA:-1.30629911172;E2F1..5:-1.33926639794;NR5A1,2:-1.46137211622;NR6A1:-1.49391468465;RXRA_VDR{dimer}:-1.50002645789;TFAP4:-1.51444314178;ELF1,2,4:-1.51638115945;ELK1,4_GABP{A,B1}:-1.5472042377;SRF:-1.57951391243;RXR{A,B,G}:-1.66260375067;GLI1..3:-1.69003448172;ESR1:-1.74747544066;NR1H4:-1.77476640753;HOX{A5,B5}:-1.7937345181;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.82911616627;ALX4:-1.83269162819;HES1:-2.13986257961;EN1,2:-2.21640521474;PPARG:-2.33120160387;STAT5{A,B}:-2.74150282507 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10169-103B7;search_select_hide=table117:FF:10169-103B7 | |||
}} | }} |
Latest revision as of 12:24, 3 June 2020
Name: | hippocampus - adult, donor10196 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13795 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13795
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13795
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0771 |
10 | 10 | 0.0521 |
100 | 100 | 0.368 |
101 | 101 | 0.241 |
102 | 102 | 0.897 |
103 | 103 | 0.221 |
104 | 104 | 0.168 |
105 | 105 | 0.136 |
106 | 106 | 0.0302 |
107 | 107 | 0.105 |
108 | 108 | 0.981 |
109 | 109 | 0.00146 |
11 | 11 | 0.0124 |
110 | 110 | 0.0493 |
111 | 111 | 0.281 |
112 | 112 | 0.594 |
113 | 113 | 0.378 |
114 | 114 | 0.325 |
115 | 115 | 0.854 |
116 | 116 | 0.063 |
117 | 117 | 0.00618 |
118 | 118 | 0.123 |
119 | 119 | 0.223 |
12 | 12 | 0.505 |
120 | 120 | 0.23 |
121 | 121 | 0.0772 |
122 | 122 | 0.725 |
123 | 123 | 0.897 |
124 | 124 | 0.0282 |
125 | 125 | 0.348 |
126 | 126 | 0.0223 |
127 | 127 | 0.425 |
128 | 128 | 0.206 |
129 | 129 | 0.485 |
13 | 13 | 6.77604e-4 |
130 | 130 | 0.135 |
131 | 131 | 0.0836 |
132 | 132 | 0.677 |
133 | 133 | 0.0012 |
134 | 134 | 0.366 |
135 | 135 | 0.0659 |
136 | 136 | 5.85162e-4 |
137 | 137 | 0.868 |
138 | 138 | 0.892 |
139 | 139 | 0.15 |
14 | 14 | 0.808 |
140 | 140 | 0.503 |
141 | 141 | 0.514 |
142 | 142 | 0.666 |
143 | 143 | 0.0926 |
144 | 144 | 0.79 |
145 | 145 | 0.0913 |
146 | 146 | 0.331 |
147 | 147 | 0.795 |
148 | 148 | 0.265 |
149 | 149 | 0.205 |
15 | 15 | 0.111 |
150 | 150 | 0.134 |
151 | 151 | 0.568 |
152 | 152 | 0.0561 |
153 | 153 | 0.609 |
154 | 154 | 0.313 |
155 | 155 | 0.727 |
156 | 156 | 0.339 |
157 | 157 | 0.406 |
158 | 158 | 0.233 |
159 | 159 | 0.0274 |
16 | 16 | 0.0494 |
160 | 160 | 0.275 |
161 | 161 | 0.251 |
162 | 162 | 0.707 |
163 | 163 | 0.918 |
164 | 164 | 0.0132 |
165 | 165 | 0.0484 |
166 | 166 | 0.696 |
167 | 167 | 0.685 |
168 | 168 | 0.295 |
169 | 169 | 0.0132 |
17 | 17 | 0.113 |
18 | 18 | 0.159 |
19 | 19 | 0.187 |
2 | 2 | 0.73 |
20 | 20 | 0.133 |
21 | 21 | 0.0773 |
22 | 22 | 0.152 |
23 | 23 | 0.401 |
24 | 24 | 0.0152 |
25 | 25 | 0.605 |
26 | 26 | 3.36067e-5 |
27 | 27 | 0.989 |
28 | 28 | 0.744 |
29 | 29 | 0.0091 |
3 | 3 | 0.0544 |
30 | 30 | 0.922 |
31 | 31 | 0.957 |
32 | 32 | 0.0416 |
33 | 33 | 0.0423 |
34 | 34 | 0.7 |
35 | 35 | 0.733 |
36 | 36 | 0.289 |
37 | 37 | 0.0305 |
38 | 38 | 0.261 |
39 | 39 | 0.249 |
4 | 4 | 0.895 |
40 | 40 | 0.0364 |
41 | 41 | 0.441 |
42 | 42 | 0.277 |
43 | 43 | 0.121 |
44 | 44 | 0.154 |
45 | 45 | 0.591 |
46 | 46 | 0.0738 |
47 | 47 | 0.0541 |
48 | 48 | 0.0377 |
49 | 49 | 0.21 |
5 | 5 | 0.78 |
50 | 50 | 0.173 |
51 | 51 | 0.523 |
52 | 52 | 0.536 |
53 | 53 | 0.836 |
54 | 54 | 0.348 |
55 | 55 | 0.771 |
56 | 56 | 0.53 |
57 | 57 | 0.41 |
58 | 58 | 0.406 |
59 | 59 | 0.0394 |
6 | 6 | 0.917 |
60 | 60 | 0.0755 |
61 | 61 | 0.049 |
62 | 62 | 0.268 |
63 | 63 | 0.163 |
64 | 64 | 0.191 |
65 | 65 | 0.224 |
66 | 66 | 0.121 |
67 | 67 | 0.224 |
68 | 68 | 0.149 |
69 | 69 | 0.559 |
7 | 7 | 0.0565 |
70 | 70 | 0.037 |
71 | 71 | 0.0127 |
72 | 72 | 0.311 |
73 | 73 | 0.0203 |
74 | 74 | 0.917 |
75 | 75 | 0.0191 |
76 | 76 | 0.42 |
77 | 77 | 0.125 |
78 | 78 | 4.49413e-4 |
79 | 79 | 0.338 |
8 | 8 | 0.108 |
80 | 80 | 0.436 |
81 | 81 | 0.825 |
82 | 82 | 0.682 |
83 | 83 | 0.012 |
84 | 84 | 0.535 |
85 | 85 | 0.272 |
86 | 86 | 0.154 |
87 | 87 | 8.1062e-5 |
88 | 88 | 0.766 |
89 | 89 | 0.5 |
9 | 9 | 0.363 |
90 | 90 | 0.265 |
91 | 91 | 0.843 |
92 | 92 | 0.841 |
93 | 93 | 0.497 |
94 | 94 | 0.426 |
95 | 95 | 0.00833 |
96 | 96 | 0.775 |
97 | 97 | 0.599 |
98 | 98 | 0.351 |
99 | 99 | 0.43 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13795
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0010153 hippocampus - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010153 (hippocampus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
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