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{{f5samples
{{f5samples
|id=FF:10614-108G2
|DRA_sample_Accession=CAGE@SAMD00005958
|name=gastric adenocarcinoma cell line:MKN1
|accession_numbers=CAGE;DRX007890;DRR008762;DRZ000187;DRZ001572;DRZ011537;DRZ012922
|sample_id=10614
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|rna_tube_id=108G2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178
|rna_box=108
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119
|rna_position=G2
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0102384
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1003
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!1.90!78.72!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.74!85.72!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.36!ELF3;;chr3:189349162..189349207,+!p2@TP63!1.65!43.36!TP63;;chr11:129245526..129245553,+!p1@BARX2!1.62!40.76!BARX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.76!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.50!77.73!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!1.47!32.77!TFAP2A;;chr17:48072574..48072597,-!p1@DLX3!1.40!23.98!DLX3;;chr11:129245736..129245758,+!p2@BARX2!1.39!23.78!BARX2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.35!21.18!SOHLH2;;chr6:10412600..10412637,-!p1@TFAP2A!1.29!30.37!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.39!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.17!13.79!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.17!13.79!FOXL2;;chr5:321810..321877,+!p1@AHRR!1.14!40.76!AHRR;;chr19:33793430..33793447,-!p1@CEBPA!1.13!52.75!CEBPA;;chr1:6479968..6479986,-!p1@HES2!1.11!11.79!HES2;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.99!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.10!11.59!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!1.09!11.39!HOXC13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.05!10.19!HOXC5;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!1.05!10.19!FOXR2;;chr11:16627528..16627550,-!p7@SOX6!1.04!9.99!SOX6;;chr20:30193083..30193098,+!p1@ID1!1.03!794.44!ID1;;chr6:29648890..29648944,-!p1@ZFP57!1.03!9.79!ZFP57;;chr10:48355030..48355090,+!p1@ZNF488!1.01!11.99!ZNF488;;chr7:57509877..57509895,+!p1@ZNF716!1.01!9.19!ZNF716;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.99!HOXB6;;chr1:41827095..41827155,+!p1@FOXO6!0.99!11.99!FOXO6;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.39!NFATC2;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.79!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.97!10.39!NCOA7;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.39!SIM2;;chr12:54332652..54332671,+!p2@HOXC13!0.97!8.39!HOXC13;;chr2:172967621..172967637,-!p1@DLX2!0.96!22.58!DLX2;;chr12:54332687..54332701,+!p3@HOXC13!0.95!7.99!HOXC13;;chr6:10412576..10412599,-!p5@TFAP2A!0.95!7.99!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.79!FOXF1;;chr6:21593973..21593988,+!p1@SOX4!0.93!280.93!SOX4;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.59!HOXA7;;chr17:7197911..7197964,-!p1@YBX2!0.93!7.59!YBX2;;chr3:138665969..138665993,-!p2@FOXL2!0.92!7.39!FOXL2;;chr5:172662197..172662216,-!p1@NKX2-5!0.92!7.39!NKX2-5;;chr3:12330560..12330579,+!p1@PPARG!0.91!8.19!PPARG;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.19!HOXB7;;chr6:10415484..10415508,-!p3@TFAP2A!0.87!6.39!TFAP2A;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.86!63.94!ZNF595;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.79!PITX1;;chr17:48046543..48046575,+!p2@DLX4!0.84!5.99!DLX4;;chr12:125003087..125003141,-!p4@NCOR2!0.82!7.39!NCOR2;;chr5:124082322..124082364,-!p1@ZNF608!0.81!14.79!ZNF608;;chr6:10412477..10412490,-!p10@TFAP2A!0.81!5.39!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.81!5.39!HOXA3;;chr9:124976154..124976177,-!p5@LHX6!0.81!5.39!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.71!MYBL2;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr12:54694758..54694805,-!p1@NFE2!0.79!6.39!NFE2;;chr6:10415263..10415274,-!p8@TFAP2A!0.79!5.20!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.79!5.20!LHX6;;chr3:189348969..189349018,+!p4@TP63!0.79!5.20!TP63;;chr1:10856639..10856662,-!p2@CASZ1!0.79!5.20!CASZ1;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.57!NCOA4;;chr12:53625966..53626012,-!p2@RARG!0.78!14.19!RARG;;chr6:21597370..21597408,+!p5@SOX4!0.78!8.39!SOX4;;chr13:28543285..28543314,-!p2@CDX2!0.78!5.00!CDX2;;chr21:38071403..38071428,+!p2@SIM2!0.78!5.00!SIM2;;chr14:89628064..89628109,-!p4@FOXN3!0.77!10.79!FOXN3;;chr20:50808667..50808729,-!p3@ZFP64!0.77!9.99!ZFP64;;chr10:8095593..8095625,+!p3@GATA3!0.77!5.79!GATA3;;chr12:53614115..53614154,-!p1@RARG!0.76!27.97!RARG;;chr19:33865009..33865090,+!p3@CEBPG!0.76!6.59!CEBPG;;chr19:22605136..22605154,-!p1@ZNF98!0.76!4.80!ZNF98;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.80!HOXC5;;chr13:28543431..28543487,-!p1@CDX2!0.76!4.80!CDX2;;chr5:121465234..121465263,+!p1@ZNF474!0.76!4.80!ZNF474;;chr7:63505799..63505904,+!p1@ZNF727!0.76!4.80!ZNF727;;chr12:52445218..52445237,+!p1@NR4A1!0.75!64.54!NR4A1;;chr19:33864571..33864596,+!p2@CEBPG!0.74!11.99!CEBPG;;chr18:55102628..55102646,+!p2@ONECUT2!0.73!4.40!ONECUT2;;chr12:53625846..53625861,-!p6@RARG!0.73!4.40!RARG;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.40!NPAS1;;chr19:35759824..35759891,+!p1@USF2!0.72!149.66!USF2;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr19:22605097..22605121,-!p2@ZNF98!0.72!4.20!ZNF98;;chr20:50808639..50808661,-!p6@ZFP64!0.72!4.20!ZFP64;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.72!4.20!EN2;;chr7:5111723..5111807,+!p2@RBAK!0.72!4.20!RBAK;;chr8:10588010..10588030,-!p1@SOX7!0.72!4.20!SOX7;;chr8:11561684..11561751,+!p1@GATA4!0.72!4.20!GATA4;;chr8:41508327..41508355,-!p1@NKX6-3!0.72!4.20!NKX6-3;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.20!DLX1;;chr2:45236540..45236577,-!p1@SIX2!0.72!4.20!SIX2;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!240.17!NFE2L1;;chr12:125002827..125002855,-!p5@NCOR2!0.70!5.99!NCOR2;;chr1:10856665..10856683,-!p4@CASZ1!0.70!4.00!CASZ1;;chrX:55620481..55620492,+!p@chrX:55620481..55620492,+!0.70!4.00!FOXR2;;chr19:33864600..33864732,+!p1@CEBPG!0.69!125.28!CEBPG;;chr12:115121962..115121987,-!p1@TBX3!0.69!36.96!TBX3;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.79!OSR1;;chr6:21597283..21597312,+!p7@SOX4!0.69!5.39!SOX4;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.38!ZNF467;;chr9:110250697..110250738,-!p2@KLF4!0.68!4.60!KLF4;;chr5:153857778..153857794,-!p1@HAND1!0.68!3.80!HAND1;;chr7:101917407..101917443,+!p3@CUX1!0.68!3.80!CUX1;;chr9:96717629..96717644,-!p1@BARX1!0.68!3.80!BARX1;;chr2:16080659..16080685,+!p1@MYCN!0.68!3.80!MYCN;;chr17:46127997..46128015,+!p5@NFE2L1!0.67!5.39!NFE2L1;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.60!HOXB13;;chr11:16629261..16629284,-!p1@SOX6!0.66!3.60!SOX6;;chrX:55620469..55620479,+!p@chrX:55620469..55620479,+!0.66!3.60!FOXR2;;chr9:110252035..110252057,-!p1@KLF4!0.65!64.94!KLF4;;chr16:67881588..67881612,-!p2@CENPT!0.65!5.00!CENPT;;chr9:110251836..110251887,-!p4@KLF4!0.65!4.80!KLF4;;chr18:22932080..22932170,-!p1@ZNF521!0.64!16.38!ZNF521;;chr16:79634595..79634620,-!p2@MAF!0.64!6.79!MAF;;chr17:48046642..48046667,+!p3@DLX4!0.64!3.40!DLX4;;chr12:54694653..54694672,-!p2@NFE2!0.64!3.40!NFE2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.63!38.16!GLIS2;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.39!RUNX1;;chr17:46688334..46688385,-!p1@HOXB7!0.63!5.00!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.20!HOXC4;;chr3:69788576..69788648,+!p1@MITF!0.62!19.58!MITF;;chr6:21594845..21594908,+!p6@SOX4!0.62!5.59!SOX4;;chr20:2673383..2673441,+!p1@EBF4!0.62!5.39!EBF4;;chr20:62680984..62680999,-!p1@SOX18!0.62!4.40!SOX18;;chr20:55204351..55204377,+!p1@TFAP2C!0.62!4.20!TFAP2C;;chr14:37131058..37131139,+!p1@PAX9!0.62!3.20!PAX9;;chr16:67881534..67881549,-!p4@CENPT!0.62!3.20!CENPT;;chr3:128206762..128206781,-!p2@GATA2!0.61!22.58!GATA2;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.39!EGR1;;chr12:80084737..80084763,-!p3@PAWR!0.61!13.39!PAWR;;chr8:144766669..144766683,+!p2@ZNF707!0.61!6.19!ZNF707;;chr5:43120995..43121052,+!p1@ZNF131!0.60!17.98!ZNF131;;chr12:80084167..80084197,-!p5@PAWR!0.60!7.99!PAWR;;chr1:935398..935465,-!p2@HES4!0.60!6.99!HES4;;chr1:247171316..247171336,-!p3@ZNF695!0.60!4.80!ZNF695;;chr12:80083544..80083558,-!p13@PAWR!0.60!4.00!PAWR;;chr5:124082279..124082319,-!p3@ZNF608!0.60!3.80!ZNF608;;chr14:95236440..95236465,-!p1@GSC!0.60!3.00!GSC;;chr16:85932760..85932775,+!p1@IRF8!0.60!3.00!IRF8;;chr17:46703687..46703740,-!p1@HOXB9!0.60!3.00!HOXB9;;chr10:28032421..28032494,-!p2@MKX!0.60!3.00!MKX;;chr11:129245780..129245785,+!p5@BARX2!0.60!3.00!BARX2;;chr11:129245796..129245803,+!p3@BARX2!0.60!3.00!BARX2;;chr12:54332675..54332686,+!p4@HOXC13!0.60!3.00!HOXC13;;chr12:57914286..57914304,-!p1@DDIT3!0.59!127.68!DDIT3;;chr19:45971246..45971265,+!p1@FOSB!0.58!63.94!FOSB;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!11.99!BHLHE41;;chr6:21597431..21597447,+!p8@SOX4!0.58!3.80!SOX4;;chr2:191878812..191878823,-!p2@STAT1!0.58!3.80!STAT1;;chr10:8096631..8096660,+!p1@GATA3!0.58!3.60!GATA3;;chr11:16629369..16629392,-!p5@SOX6!0.58!2.80!SOX6;;chr11:19262421..19262455,-!p3@E2F8!0.58!2.80!E2F8;;chr11:31832658..31832681,-!p1@PAX6!0.58!2.80!PAX6;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.80!TBX1;;chr2:172950227..172950249,+!p2@DLX1!0.58!2.80!DLX1;;chr1:10856694..10856715,-!p3@CASZ1!0.58!2.80!CASZ1;;chr9:110252074..110252079,-!p3@KLF4!0.57!5.00!KLF4;;chr1:59249645..59249656,-!p4@JUN!0.56!7.79!JUN;;chr6:21597514..21597578,+!p4@SOX4!0.56!5.00!SOX4;;chr14:75746722..75746777,+!p2@FOS!0.56!3.60!FOS;;chr15:76629123..76629151,+!p1@ISL2!0.56!3.00!ISL2;;chr17:46687935..46687950,-!p3@HOXB7!0.56!2.60!HOXB7;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.60!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.56!2.60!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.56!2.60!PAX3;;chr4:149363475..149363492,-!p2@NR3C2!0.56!2.60!NR3C2;;chr4:149363494..149363543,-!p1@NR3C2!0.56!2.60!NR3C2;;chr11:16627614..16627651,-!p4@SOX6!0.56!2.60!SOX6;;chr5:121465268..121465281,+!p2@ZNF474!0.56!2.60!ZNF474;;chr5:134369879..134369898,-!p2@PITX1!0.56!2.60!PITX1;;chr7:156803329..156803362,-!p1@MNX1!0.56!2.60!MNX1;;chr9:124976299..124976327,-!p3@LHX6!0.56!2.60!LHX6;;chr9:124976328..124976372,-!p2@LHX6!0.56!2.60!LHX6;;chr19:49140609..49140643,-!p1@DBP!0.55!17.78!DBP;;chr2:239148671..239148686,-!p1@HES6!0.55!11.39!HES6;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.99!ENO1;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.59!HOXA1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.55!4.40!TAX1BP1;;chrX:76937934..76937974,-!p3@ATRX!0.55!4.40!ATRX;;chr7:149470540..149470596,-!p2@ZNF467!0.55!3.60!ZNF467;;chr11:6947720..6947812,+!p1@ZNF215!0.55!3.60!ZNF215;;chr20:47894569..47894799,-!p1@ZNFX1!0.54!84.32!ZNFX1;;chr19:36706024..36706049,+!p1@ZNF146!0.54!56.75!ZNF146;;chr1:246729483..246729538,-!p2@TF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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=72
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.83
|rna_od260/280=2.17
|sample_cell_type=unclassifiable
|sample_cell_line=MKN1
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=gastric adenocarcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=29.35714
|rna_concentration=0.62462
|sample_note=
|profile_hcage=CNhs11737,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000945,UBERON:0001007,UBERON:0001041,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:299,DOID:305,DOID:3119,DOID:4
|sample_description=
|fonse_cell_line=FF:0100787,FF:0101120
|fonse_cell_line=FF:0100787,FF:0101120
|fonse_cell_line_closure=FF:0100787,FF:0101120
|fonse_cell_line_closure=FF:0100787,FF:0101120
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.ctss.bed.gz
|id=FF:10614-108G2
|is_a=EFO:0002091;;FF:0000210;;FF:0102384
|is_obsolete=
|library_id=CNhs11737
|library_id_phase_based=2:CNhs11737
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10614
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10614
|name=gastric adenocarcinoma cell line:MKN1
|namespace=FANTOM5
|part_of=
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|profile_hcage=CNhs11737,LSID819,release009,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=108
|rna_catalog_number=
|rna_concentration=0.62462
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.83
|rna_od260/280=2.17
|rna_position=G2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108G2
|rna_weight_ug=29.35714
|sample_age=72
|sample_category=cell lines
|sample_cell_catalog=RCB1003
|sample_cell_line=MKN1
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=gastric adenocarcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.04607622444074e-258!GO:0043226;organelle;3.71769190091483e-206!GO:0043229;intracellular organelle;1.57088081422879e-205!GO:0043231;intracellular membrane-bound organelle;5.59548580637209e-202!GO:0043227;membrane-bound organelle;5.59548580637209e-202!GO:0005737;cytoplasm;1.48493867903814e-190!GO:0044422;organelle part;5.19024868548818e-149!GO:0044446;intracellular organelle part;2.11580738921999e-147!GO:0044444;cytoplasmic part;3.82025349261718e-132!GO:0032991;macromolecular complex;5.27776895671312e-106!GO:0044237;cellular metabolic process;7.63138474893666e-89!GO:0044238;primary metabolic process;1.38047950928376e-87!GO:0030529;ribonucleoprotein complex;3.7567140772962e-86!GO:0005634;nucleus;1.41608082118251e-85!GO:0043170;macromolecule metabolic process;3.33999921260446e-81!GO:0044428;nuclear part;4.56320634102909e-78!GO:0005515;protein binding;4.82432759106941e-78!GO:0043233;organelle lumen;2.31379652402995e-77!GO:0031974;membrane-enclosed lumen;2.31379652402995e-77!GO:0003723;RNA binding;1.37352782906386e-74!GO:0005739;mitochondrion;3.59445928984521e-70!GO:0016043;cellular component organization and biogenesis;2.77700413423479e-55!GO:0043234;protein complex;6.83293177405884e-55!GO:0006412;translation;8.75211751859876e-55!GO:0005840;ribosome;1.23397095259787e-52!GO:0006396;RNA processing;4.82423542466264e-50!GO:0019538;protein metabolic process;3.28448056435615e-49!GO:0044429;mitochondrial part;2.94881271200234e-47!GO:0043283;biopolymer metabolic process;8.63982544543796e-47!GO:0031981;nuclear lumen;1.31595269522351e-46!GO:0031090;organelle membrane;4.27003039077139e-46!GO:0003735;structural constituent of ribosome;6.68178514876909e-46!GO:0010467;gene expression;1.58867929787057e-44!GO:0044267;cellular protein metabolic process;6.61716188857365e-44!GO:0044260;cellular macromolecule metabolic process;1.20777017924093e-43!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.63930582661154e-43!GO:0031967;organelle envelope;1.19858049356674e-42!GO:0031975;envelope;2.15699079039191e-42!GO:0044249;cellular biosynthetic process;1.82444336145377e-41!GO:0033036;macromolecule localization;3.04134537088366e-41!GO:0033279;ribosomal subunit;1.6581901301072e-40!GO:0015031;protein transport;2.40894853668171e-40!GO:0005829;cytosol;3.82830197115898e-39!GO:0009059;macromolecule biosynthetic process;4.14939612042975e-39!GO:0009058;biosynthetic process;9.32346012353851e-39!GO:0043228;non-membrane-bound organelle;1.90499313501295e-38!GO:0043232;intracellular non-membrane-bound organelle;1.90499313501295e-38!GO:0016071;mRNA metabolic process;7.66888592472159e-38!GO:0008104;protein localization;1.9119812023231e-37!GO:0045184;establishment of protein localization;8.72337174916589e-37!GO:0046907;intracellular transport;3.09233573719785e-36!GO:0008380;RNA splicing;4.23152835785242e-35!GO:0006996;organelle organization and biogenesis;8.09230736306578e-35!GO:0065003;macromolecular complex assembly;1.26737009884791e-34!GO:0006397;mRNA processing;9.30268553765538e-33!GO:0022607;cellular component assembly;1.80845240094743e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.77968491350718e-31!GO:0005740;mitochondrial envelope;1.73678387942941e-28!GO:0006886;intracellular protein transport;4.06978549952352e-28!GO:0003676;nucleic acid binding;5.20286268209708e-28!GO:0005654;nucleoplasm;5.53118991836226e-28!GO:0007049;cell cycle;8.17818181565744e-28!GO:0006259;DNA metabolic process;1.39378560188441e-27!GO:0019866;organelle inner membrane;1.92518445899027e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.11950598622933e-27!GO:0031966;mitochondrial membrane;1.53844762859171e-26!GO:0005743;mitochondrial inner membrane;6.3146151137825e-26!GO:0000166;nucleotide binding;8.03913384971027e-26!GO:0051649;establishment of cellular localization;3.8146055338431e-25!GO:0005681;spliceosome;4.41906164347593e-25!GO:0051641;cellular localization;7.11856449471541e-25!GO:0044445;cytosolic part;6.92342124824694e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.49056584074522e-24!GO:0016462;pyrophosphatase activity;9.42855494572526e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.40741852309906e-23!GO:0044451;nucleoplasm part;3.42214496730947e-23!GO:0017111;nucleoside-triphosphatase activity;3.60545834697741e-23!GO:0031980;mitochondrial lumen;2.60214663034584e-22!GO:0005759;mitochondrial matrix;2.60214663034584e-22!GO:0015934;large ribosomal subunit;1.64687072744911e-21!GO:0006119;oxidative phosphorylation;3.25466209008114e-21!GO:0022402;cell cycle process;5.6726168714889e-21!GO:0016070;RNA metabolic process;2.47982101987357e-20!GO:0015935;small ribosomal subunit;4.82998012652478e-20!GO:0005730;nucleolus;5.17312950289251e-20!GO:0016874;ligase activity;1.01175627205148e-19!GO:0006457;protein folding;1.28788091888816e-19!GO:0044455;mitochondrial membrane part;3.06586329637194e-19!GO:0032553;ribonucleotide binding;8.65110733490499e-19!GO:0032555;purine ribonucleotide binding;8.65110733490499e-19!GO:0012505;endomembrane system;2.35230980875443e-18!GO:0017076;purine nucleotide binding;4.51716101709434e-18!GO:0005783;endoplasmic reticulum;7.09887719088453e-18!GO:0000278;mitotic cell cycle;2.01808973997445e-17!GO:0006512;ubiquitin cycle;2.114833318365e-17!GO:0022618;protein-RNA complex assembly;2.13150402847261e-17!GO:0008135;translation factor activity, nucleic acid binding;4.39227823055253e-17!GO:0008134;transcription factor binding;4.55091712364076e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.53771154963911e-17!GO:0006974;response to DNA damage stimulus;1.43148939795551e-16!GO:0043285;biopolymer catabolic process;1.70087528152174e-16!GO:0048770;pigment granule;2.75048821514954e-16!GO:0042470;melanosome;2.75048821514954e-16!GO:0005746;mitochondrial respiratory chain;3.64989577528826e-16!GO:0005761;mitochondrial ribosome;4.52040945715319e-16!GO:0000313;organellar ribosome;4.52040945715319e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.88146937332361e-16!GO:0005694;chromosome;6.41902882535665e-16!GO:0016192;vesicle-mediated transport;1.54460504955927e-15!GO:0042254;ribosome biogenesis and assembly;1.55688417754168e-15!GO:0012501;programmed cell death;2.1278481135944e-15!GO:0006915;apoptosis;2.89554250248661e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.93020042133701e-15!GO:0030163;protein catabolic process;4.7739046777421e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.10844183810325e-15!GO:0003954;NADH dehydrogenase activity;7.10844183810325e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.10844183810325e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.11732403929979e-15!GO:0006605;protein targeting;1.09195324008574e-14!GO:0051082;unfolded protein binding;1.14726491269247e-14!GO:0019941;modification-dependent protein catabolic process;1.60327603812792e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.60327603812792e-14!GO:0051186;cofactor metabolic process;1.82826325592189e-14!GO:0005635;nuclear envelope;2.50416244398116e-14!GO:0044257;cellular protein catabolic process;2.91866956366217e-14!GO:0044265;cellular macromolecule catabolic process;3.14628312332977e-14!GO:0009057;macromolecule catabolic process;3.41935749149725e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.75737321899879e-14!GO:0008219;cell death;4.21071518792004e-14!GO:0016265;death;4.21071518792004e-14!GO:0022403;cell cycle phase;6.31071287429746e-14!GO:0044427;chromosomal part;1.15153777943917e-13!GO:0031965;nuclear membrane;1.22835619229379e-13!GO:0044432;endoplasmic reticulum part;1.49285738923078e-13!GO:0006281;DNA repair;1.97562790923186e-13!GO:0006366;transcription from RNA polymerase II promoter;2.21683875181814e-13!GO:0005524;ATP binding;2.38751198531028e-13!GO:0032559;adenyl ribonucleotide binding;2.40284623361721e-13!GO:0048193;Golgi vesicle transport;2.71777402462161e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.40814150516818e-13!GO:0042775;organelle ATP synthesis coupled electron transport;9.7788019214563e-13!GO:0042773;ATP synthesis coupled electron transport;9.7788019214563e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.04708839711459e-12!GO:0045271;respiratory chain complex I;1.04708839711459e-12!GO:0005747;mitochondrial respiratory chain complex I;1.04708839711459e-12!GO:0005794;Golgi apparatus;1.17322158199994e-12!GO:0030554;adenyl nucleotide binding;1.25143501960231e-12!GO:0044453;nuclear membrane part;2.02805773950988e-12!GO:0051276;chromosome organization and biogenesis;2.37922196646894e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.7283071230774e-12!GO:0051301;cell division;3.73974454382599e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.87604138549141e-12!GO:0000087;M phase of mitotic cell cycle;4.9677360482863e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.12933467345432e-12!GO:0000375;RNA splicing, via transesterification reactions;5.12933467345432e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.12933467345432e-12!GO:0003743;translation initiation factor activity;5.56040758707571e-12!GO:0007067;mitosis;7.16937394125079e-12!GO:0016887;ATPase activity;8.63775181802952e-12!GO:0006913;nucleocytoplasmic transport;9.55646751079415e-12!GO:0006399;tRNA metabolic process;1.46225680321878e-11!GO:0051726;regulation of cell cycle;1.46225680321878e-11!GO:0006732;coenzyme metabolic process;1.53094012134106e-11!GO:0005643;nuclear pore;1.54031994796159e-11!GO:0042623;ATPase activity, coupled;1.79737449269986e-11!GO:0043412;biopolymer modification;1.79737449269986e-11!GO:0016604;nuclear body;1.83626798917233e-11!GO:0051169;nuclear transport;2.02374451852161e-11!GO:0000074;regulation of progression through cell cycle;2.31413898313039e-11!GO:0009719;response to endogenous stimulus;2.77250747107667e-11!GO:0006461;protein complex assembly;6.61577036817529e-11!GO:0009055;electron carrier activity;8.75742741353597e-11!GO:0044248;cellular catabolic process;1.09005633121024e-10!GO:0004386;helicase activity;1.32218225278635e-10!GO:0003712;transcription cofactor activity;1.69226783816586e-10!GO:0006260;DNA replication;2.8420129176593e-10!GO:0006413;translational initiation;3.76049911577234e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.18526720204103e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;4.85482570249091e-10!GO:0000279;M phase;5.39375144849176e-10!GO:0006364;rRNA processing;5.89056990068333e-10!GO:0065002;intracellular protein transport across a membrane;6.09230358015341e-10!GO:0009259;ribonucleotide metabolic process;6.23526754311926e-10!GO:0003924;GTPase activity;6.37956145020787e-10!GO:0005789;endoplasmic reticulum membrane;6.92870453074021e-10!GO:0006464;protein modification process;7.44180322579065e-10!GO:0006403;RNA localization;7.70571318578068e-10!GO:0050657;nucleic acid transport;7.70571318578068e-10!GO:0051236;establishment of RNA localization;7.70571318578068e-10!GO:0050658;RNA transport;7.70571318578068e-10!GO:0042981;regulation of apoptosis;8.75775269209526e-10!GO:0008565;protein transporter activity;9.46274411119582e-10!GO:0008026;ATP-dependent helicase activity;9.61227530428364e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.78810438454976e-10!GO:0004812;aminoacyl-tRNA ligase activity;9.78810438454976e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.78810438454976e-10!GO:0043067;regulation of programmed cell death;1.10043692818832e-09!GO:0016072;rRNA metabolic process;1.11736595729593e-09!GO:0008639;small protein conjugating enzyme activity;1.17964286214935e-09!GO:0016607;nuclear speck;1.30229873584595e-09!GO:0006323;DNA packaging;1.45894509312073e-09!GO:0006163;purine nucleotide metabolic process;1.68222535819003e-09!GO:0004842;ubiquitin-protein ligase activity;2.40678121470499e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.5324646451658e-09!GO:0006446;regulation of translational initiation;2.71885534898339e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.0620183263963e-09!GO:0043038;amino acid activation;3.28082426054023e-09!GO:0006418;tRNA aminoacylation for protein translation;3.28082426054023e-09!GO:0043039;tRNA aminoacylation;3.28082426054023e-09!GO:0050794;regulation of cellular process;3.40184990807779e-09!GO:0065004;protein-DNA complex assembly;4.07154613396563e-09!GO:0009150;purine ribonucleotide metabolic process;4.73212608300946e-09!GO:0017038;protein import;4.84179653443311e-09!GO:0005793;ER-Golgi intermediate compartment;5.30442517920084e-09!GO:0046930;pore complex;5.68303875212877e-09!GO:0009060;aerobic respiration;6.24606392021746e-09!GO:0009260;ribonucleotide biosynthetic process;6.65989597050194e-09!GO:0019787;small conjugating protein ligase activity;7.76631717652301e-09!GO:0006164;purine nucleotide biosynthetic process;8.13919794841407e-09!GO:0005768;endosome;9.33586515308634e-09!GO:0043623;cellular protein complex assembly;9.97877956018886e-09!GO:0015630;microtubule cytoskeleton;1.03166244622098e-08!GO:0043687;post-translational protein modification;1.12694853866385e-08!GO:0000785;chromatin;1.13855235757878e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.37867804384648e-08!GO:0007005;mitochondrion organization and biogenesis;1.39316432076837e-08!GO:0045333;cellular respiration;1.52565407728699e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.27603347197837e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.12571079099111e-08!GO:0006333;chromatin assembly or disassembly;3.56143189808557e-08!GO:0051188;cofactor biosynthetic process;3.88844291994449e-08!GO:0009141;nucleoside triphosphate metabolic process;4.36719269777331e-08!GO:0051028;mRNA transport;4.51074090459723e-08!GO:0005667;transcription factor complex;4.52862684220574e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.14059241278309e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.14059241278309e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.12355564652738e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.12355564652738e-08!GO:0005525;GTP binding;6.54358695970546e-08!GO:0015986;ATP synthesis coupled proton transport;7.27620565187018e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.27620565187018e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.93446194111139e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.19542369063378e-08!GO:0016881;acid-amino acid ligase activity;9.53824776814103e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.02402429617368e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.02402429617368e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.5877040831483e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.69783086375134e-07!GO:0051246;regulation of protein metabolic process;1.72807400351176e-07!GO:0019829;cation-transporting ATPase activity;2.003181624435e-07!GO:0048523;negative regulation of cellular process;2.50599412739145e-07!GO:0003697;single-stranded DNA binding;3.57654917790545e-07!GO:0051329;interphase of mitotic cell cycle;4.64379303597675e-07!GO:0051325;interphase;5.47729346132261e-07!GO:0043566;structure-specific DNA binding;6.02245571552646e-07!GO:0006099;tricarboxylic acid cycle;6.05602416217541e-07!GO:0046356;acetyl-CoA catabolic process;6.05602416217541e-07!GO:0046034;ATP metabolic process;7.5559946135109e-07!GO:0009056;catabolic process;8.30673917057116e-07!GO:0032561;guanyl ribonucleotide binding;1.10817715663099e-06!GO:0019001;guanyl nucleotide binding;1.10817715663099e-06!GO:0006754;ATP biosynthetic process;1.10862746923724e-06!GO:0006753;nucleoside phosphate metabolic process;1.10862746923724e-06!GO:0016563;transcription activator activity;1.11077983767735e-06!GO:0016779;nucleotidyltransferase activity;1.1290896385141e-06!GO:0016787;hydrolase activity;1.15067612920216e-06!GO:0004298;threonine endopeptidase activity;1.15450667187756e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.30912173389069e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.53922485808953e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.69434750541894e-06!GO:0006084;acetyl-CoA metabolic process;1.69551240508786e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.8593056108173e-06!GO:0050789;regulation of biological process;2.17595725820253e-06!GO:0032446;protein modification by small protein conjugation;2.18059387864192e-06!GO:0009117;nucleotide metabolic process;2.22699399295285e-06!GO:0009108;coenzyme biosynthetic process;2.27694501703438e-06!GO:0031988;membrane-bound vesicle;2.6575285844972e-06!GO:0000245;spliceosome assembly;2.76907581411761e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.7930318038232e-06!GO:0016568;chromatin modification;2.99327162132322e-06!GO:0051170;nuclear import;2.99725973314614e-06!GO:0016567;protein ubiquitination;3.00368712279292e-06!GO:0009109;coenzyme catabolic process;3.14643435219995e-06!GO:0030120;vesicle coat;3.22974264599784e-06!GO:0030662;coated vesicle membrane;3.22974264599784e-06!GO:0045786;negative regulation of progression through cell cycle;3.23506484310272e-06!GO:0006334;nucleosome assembly;3.25048741438314e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.28130020581745e-06!GO:0016564;transcription repressor activity;3.42871151939511e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.59486294607385e-06!GO:0045259;proton-transporting ATP synthase complex;4.56426389096291e-06!GO:0048475;coated membrane;4.56426389096291e-06!GO:0030117;membrane coat;4.56426389096291e-06!GO:0006752;group transfer coenzyme metabolic process;4.85990766329752e-06!GO:0005762;mitochondrial large ribosomal subunit;5.3710758196313e-06!GO:0000315;organellar large ribosomal subunit;5.3710758196313e-06!GO:0006606;protein import into nucleus;5.46728257437991e-06!GO:0048519;negative regulation of biological process;5.6159610784681e-06!GO:0003713;transcription coactivator activity;5.6159610784681e-06!GO:0006414;translational elongation;5.81651530849157e-06!GO:0005773;vacuole;7.48686599042851e-06!GO:0005819;spindle;7.68685166131225e-06!GO:0043069;negative regulation of programmed cell death;7.83539425408648e-06!GO:0031497;chromatin assembly;8.21112340423996e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.49077953936959e-06!GO:0048471;perinuclear region of cytoplasm;9.46301034630685e-06!GO:0051187;cofactor catabolic process;9.74007675457476e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.86620953811057e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.93336726158526e-06!GO:0000314;organellar small ribosomal subunit;9.95852696578521e-06!GO:0005763;mitochondrial small ribosomal subunit;9.95852696578521e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.04027791309011e-05!GO:0031324;negative regulation of cellular metabolic process;1.30269687446638e-05!GO:0043066;negative regulation of apoptosis;1.37414569716169e-05!GO:0000151;ubiquitin ligase complex;1.63340312480995e-05!GO:0003724;RNA helicase activity;1.677504349678e-05!GO:0008654;phospholipid biosynthetic process;1.97513096296318e-05!GO:0031982;vesicle;1.98612404768923e-05!GO:0005770;late endosome;2.14218965063924e-05!GO:0016853;isomerase activity;2.31778002781619e-05!GO:0044440;endosomal part;2.46468361765365e-05!GO:0010008;endosome membrane;2.46468361765365e-05!GO:0006613;cotranslational protein targeting to membrane;2.67227804994151e-05!GO:0005791;rough endoplasmic reticulum;2.85213415970067e-05!GO:0001558;regulation of cell growth;2.85439586498383e-05!GO:0005788;endoplasmic reticulum lumen;3.09674504309001e-05!GO:0000323;lytic vacuole;3.51192538031754e-05!GO:0005764;lysosome;3.51192538031754e-05!GO:0031410;cytoplasmic vesicle;3.70586710798567e-05!GO:0051168;nuclear export;4.07608476598301e-05!GO:0051427;hormone receptor binding;4.2083421709293e-05!GO:0045454;cell redox homeostasis;5.18831767076807e-05!GO:0007051;spindle organization and biogenesis;5.25126070063516e-05!GO:0005813;centrosome;5.40427242536588e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.53490984737635e-05!GO:0016740;transferase activity;5.5562303097663e-05!GO:0006916;anti-apoptosis;5.70844046321659e-05!GO:0019222;regulation of metabolic process;6.95905128825347e-05!GO:0005815;microtubule organizing center;7.17606140047925e-05!GO:0006261;DNA-dependent DNA replication;7.51030972976295e-05!GO:0044431;Golgi apparatus part;8.09689651218061e-05!GO:0035257;nuclear hormone receptor binding;8.2093064547143e-05!GO:0043021;ribonucleoprotein binding;9.16028581386811e-05!GO:0048522;positive regulation of cellular process;9.60802581797961e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.70043519738569e-05!GO:0016044;membrane organization and biogenesis;9.86032801504473e-05!GO:0005798;Golgi-associated vesicle;0.000100752492732397!GO:0009892;negative regulation of metabolic process;0.000101868677355027!GO:0008361;regulation of cell size;0.00010717200725752!GO:0016363;nuclear matrix;0.000110764486055188!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000112841804790838!GO:0003899;DNA-directed RNA polymerase activity;0.000122673067786845!GO:0003714;transcription corepressor activity;0.000125315097216656!GO:0000775;chromosome, pericentric region;0.000125315097216656!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00013822247868141!GO:0006793;phosphorus metabolic process;0.000144758436125957!GO:0006796;phosphate metabolic process;0.000144758436125957!GO:0016859;cis-trans isomerase activity;0.00014717877108923!GO:0042802;identical protein binding;0.000147647706818613!GO:0043065;positive regulation of apoptosis;0.000148037817374172!GO:0006612;protein targeting to membrane;0.000159201951366968!GO:0007010;cytoskeleton organization and biogenesis;0.000170235518546914!GO:0030867;rough endoplasmic reticulum membrane;0.000175175539044191!GO:0016049;cell growth;0.000176873480422894!GO:0005657;replication fork;0.000191843215524606!GO:0043681;protein import into mitochondrion;0.000202768780923169!GO:0005769;early endosome;0.00020550087304405!GO:0043068;positive regulation of programmed cell death;0.000209791919239234!GO:0048468;cell development;0.000209791919239234!GO:0005905;coated pit;0.000212004032554246!GO:0045893;positive regulation of transcription, DNA-dependent;0.000225647843286353!GO:0000059;protein import into nucleus, docking;0.00022798821472875!GO:0031252;leading edge;0.000257861739098985!GO:0006626;protein targeting to mitochondrion;0.000267316756756356!GO:0045941;positive regulation of transcription;0.000280681412725344!GO:0016481;negative regulation of transcription;0.000285634138782274!GO:0005874;microtubule;0.000290684794930681!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000294348286401833!GO:0046474;glycerophospholipid biosynthetic process;0.000341308497953235!GO:0006839;mitochondrial transport;0.000357805299981047!GO:0003729;mRNA binding;0.000368728236701706!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000376076189075837!GO:0008186;RNA-dependent ATPase activity;0.000392740487182809!GO:0003690;double-stranded DNA binding;0.000429113785492484!GO:0003682;chromatin binding;0.000438020150615508!GO:0016310;phosphorylation;0.000476288424336638!GO:0000075;cell cycle checkpoint;0.000488248305727432!GO:0008033;tRNA processing;0.000511880048143258!GO:0005885;Arp2/3 protein complex;0.000513228336749501!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000548333196394246!GO:0006091;generation of precursor metabolites and energy;0.000550644852670595!GO:0003746;translation elongation factor activity;0.000607318086746172!GO:0033116;ER-Golgi intermediate compartment membrane;0.00061011524065982!GO:0000049;tRNA binding;0.0006267747692404!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000638000919817697!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000690557636394153!GO:0051789;response to protein stimulus;0.000713113770442803!GO:0006986;response to unfolded protein;0.000713113770442803!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000725653275619859!GO:0044452;nucleolar part;0.000734277649434608!GO:0008250;oligosaccharyl transferase complex;0.000765756867381339!GO:0008632;apoptotic program;0.000795504845304391!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000796509666214809!GO:0015631;tubulin binding;0.000835629998628886!GO:0016491;oxidoreductase activity;0.000857340505816027!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000919195492721329!GO:0015399;primary active transmembrane transporter activity;0.000919195492721329!GO:0043284;biopolymer biosynthetic process;0.000940887655622952!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000957847781929843!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000957847781929843!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000957847781929843!GO:0007017;microtubule-based process;0.000959837728766758!GO:0006383;transcription from RNA polymerase III promoter;0.000970366337516976!GO:0006650;glycerophospholipid metabolic process;0.00101700793385311!GO:0004576;oligosaccharyl transferase activity;0.00102059935452989!GO:0006402;mRNA catabolic process;0.00103534862837098!GO:0006352;transcription initiation;0.00108047287483375!GO:0005048;signal sequence binding;0.00109380742660306!GO:0004004;ATP-dependent RNA helicase activity;0.00111571511429259!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00119372304493738!GO:0008094;DNA-dependent ATPase activity;0.00119993657689951!GO:0035258;steroid hormone receptor binding;0.00125471590860701!GO:0000082;G1/S transition of mitotic cell cycle;0.00129362920527022!GO:0000139;Golgi membrane;0.00135038322476075!GO:0040008;regulation of growth;0.00137151085412224!GO:0046489;phosphoinositide biosynthetic process;0.00142559665969203!GO:0016197;endosome transport;0.00142682115003778!GO:0000776;kinetochore;0.00152006239829522!GO:0045045;secretory pathway;0.00153733341171818!GO:0030663;COPI coated vesicle membrane;0.0017435694080272!GO:0030126;COPI vesicle coat;0.0017435694080272!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00179483625338259!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.001826075864474!GO:0031968;organelle outer membrane;0.00183079930592616!GO:0003711;transcription elongation regulator activity;0.00184610524955418!GO:0006891;intra-Golgi vesicle-mediated transport;0.00184971440407792!GO:0030521;androgen receptor signaling pathway;0.00187474319669878!GO:0006302;double-strand break repair;0.00187474319669878!GO:0031072;heat shock protein binding;0.00195556792953364!GO:0019867;outer membrane;0.00195556792953364!GO:0050681;androgen receptor binding;0.00216412327997519!GO:0003684;damaged DNA binding;0.00219544197879286!GO:0000786;nucleosome;0.00220001806351022!GO:0051252;regulation of RNA metabolic process;0.0022282582012507!GO:0016272;prefoldin complex;0.0023360822814511!GO:0051052;regulation of DNA metabolic process;0.00246588531636749!GO:0031323;regulation of cellular metabolic process;0.002534147969933!GO:0019899;enzyme binding;0.00257365968902748!GO:0048487;beta-tubulin binding;0.00269156450824929!GO:0005741;mitochondrial outer membrane;0.00270113352268952!GO:0051087;chaperone binding;0.00280608030151793!GO:0008168;methyltransferase activity;0.00280608030151793!GO:0051920;peroxiredoxin activity;0.00294506579261098!GO:0016741;transferase activity, transferring one-carbon groups;0.00304031999874489!GO:0022890;inorganic cation transmembrane transporter activity;0.00309053715449562!GO:0006405;RNA export from nucleus;0.0032113142224049!GO:0006401;RNA catabolic process;0.00321772761048808!GO:0030384;phosphoinositide metabolic process;0.00323914664822518!GO:0065007;biological regulation;0.00331133205666141!GO:0009165;nucleotide biosynthetic process;0.00348478407416992!GO:0030137;COPI-coated vesicle;0.00363185534299429!GO:0045792;negative regulation of cell size;0.0036563768553407!GO:0006897;endocytosis;0.0039000792148374!GO:0010324;membrane invagination;0.0039000792148374!GO:0007243;protein kinase cascade;0.00405400008445859!GO:0003678;DNA helicase activity;0.00412913583574738!GO:0030133;transport vesicle;0.00420567117189938!GO:0008139;nuclear localization sequence binding;0.00456512710063537!GO:0030308;negative regulation of cell growth;0.00456512710063537!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00456512710063537!GO:0018196;peptidyl-asparagine modification;0.00456512710063537!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00456512710063537!GO:0048500;signal recognition particle;0.00457491606221035!GO:0009116;nucleoside metabolic process;0.00458010879157616!GO:0043488;regulation of mRNA stability;0.00484599599113004!GO:0043487;regulation of RNA stability;0.00484599599113004!GO:0031124;mRNA 3'-end processing;0.00489677553288899!GO:0030132;clathrin coat of coated pit;0.00491222058279087!GO:0051287;NAD binding;0.00528337257445982!GO:0008022;protein C-terminus binding;0.00533091125351658!GO:0015992;proton transport;0.00539473858820417!GO:0006818;hydrogen transport;0.00544619639496565!GO:0043022;ribosome binding;0.00544619639496565!GO:0019843;rRNA binding;0.00558418431099276!GO:0046983;protein dimerization activity;0.00595018769330322!GO:0007050;cell cycle arrest;0.00607044069920762!GO:0030880;RNA polymerase complex;0.00608158109816166!GO:0051059;NF-kappaB binding;0.00615289204050402!GO:0006417;regulation of translation;0.0061928323585132!GO:0007006;mitochondrial membrane organization and biogenesis;0.00623580110228299!GO:0007264;small GTPase mediated signal transduction;0.00629560282507191!GO:0030176;integral to endoplasmic reticulum membrane;0.00637586198470221!GO:0046467;membrane lipid biosynthetic process;0.00647075545322433!GO:0006350;transcription;0.00655785521932439!GO:0019752;carboxylic acid metabolic process;0.00663895832064064!GO:0008312;7S RNA binding;0.00693580747745883!GO:0030036;actin cytoskeleton organization and biogenesis;0.00726541518695439!GO:0031902;late endosome membrane;0.00727690530778724!GO:0006917;induction of apoptosis;0.00741962166921788!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00744380063238506!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00744380063238506!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00745698298750768!GO:0006378;mRNA polyadenylation;0.00760649850375906!GO:0006082;organic acid metabolic process;0.00763979925701451!GO:0048518;positive regulation of biological process;0.00770239071372926!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00778725562888699!GO:0045047;protein targeting to ER;0.00778725562888699!GO:0016251;general RNA polymerase II transcription factor activity;0.0081626363217557!GO:0046483;heterocycle metabolic process;0.00824255779959326!GO:0030118;clathrin coat;0.00832116108829314!GO:0007059;chromosome segregation;0.00862377970750037!GO:0005758;mitochondrial intermembrane space;0.00862377970750037!GO:0007052;mitotic spindle organization and biogenesis;0.00862377970750037!GO:0008637;apoptotic mitochondrial changes;0.00862377970750037!GO:0006506;GPI anchor biosynthetic process;0.00887575236168969!GO:0012502;induction of programmed cell death;0.0091852888176746!GO:0045926;negative regulation of growth;0.00931112399358176!GO:0007093;mitotic cell cycle checkpoint;0.00957829289470046!GO:0009112;nucleobase metabolic process;0.0096325403728632!GO:0005684;U2-dependent spliceosome;0.00966280100789497!GO:0008180;signalosome;0.0096690782417945!GO:0043492;ATPase activity, coupled to movement of substances;0.0100149786984922!GO:0003702;RNA polymerase II transcription factor activity;0.0100406767686054!GO:0043433;negative regulation of transcription factor activity;0.0100511003597123!GO:0031970;organelle envelope lumen;0.0102584019702253!GO:0005832;chaperonin-containing T-complex;0.0103198539725101!GO:0007088;regulation of mitosis;0.0105419723006469!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0106095705164467!GO:0006595;polyamine metabolic process;0.0109693633862262!GO:0008092;cytoskeletal protein binding;0.0112237451517319!GO:0045892;negative regulation of transcription, DNA-dependent;0.011237757616985!GO:0008629;induction of apoptosis by intracellular signals;0.011275679572751!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0113229609412903!GO:0000428;DNA-directed RNA polymerase complex;0.0113229609412903!GO:0003923;GPI-anchor transamidase activity;0.0119014661933626!GO:0016255;attachment of GPI anchor to protein;0.0119014661933626!GO:0042765;GPI-anchor transamidase complex;0.0119014661933626!GO:0006509;membrane protein ectodomain proteolysis;0.0119014661933626!GO:0033619;membrane protein proteolysis;0.0119014661933626!GO:0051540;metal cluster binding;0.0119014661933626!GO:0051536;iron-sulfur cluster binding;0.0119014661933626!GO:0065009;regulation of a molecular function;0.0121935948261732!GO:0006310;DNA recombination;0.0122339648278483!GO:0006505;GPI anchor metabolic process;0.0123280436739598!GO:0008234;cysteine-type peptidase activity;0.012430273283468!GO:0000339;RNA cap binding;0.0125333551635819!GO:0005869;dynactin complex;0.0126092624756833!GO:0042770;DNA damage response, signal transduction;0.0127134525631111!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0127418275270765!GO:0050662;coenzyme binding;0.0128370596866163!GO:0005876;spindle microtubule;0.0129622151152029!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0130778553021233!GO:0006611;protein export from nucleus;0.0131014752507333!GO:0030119;AP-type membrane coat adaptor complex;0.0133130418206031!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.013413991168618!GO:0006520;amino acid metabolic process;0.0138947187126134!GO:0000096;sulfur amino acid metabolic process;0.0144901107633763!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0147406616209798!GO:0009081;branched chain family amino acid metabolic process;0.0148538604734672!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0151016053312692!GO:0006518;peptide metabolic process;0.0151554944837923!GO:0030518;steroid hormone receptor signaling pathway;0.0153496407168609!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159947341108435!GO:0050811;GABA receptor binding;0.016063067301758!GO:0031326;regulation of cellular biosynthetic process;0.0162186190276691!GO:0016584;nucleosome positioning;0.0165630700915095!GO:0031123;RNA 3'-end processing;0.0166583429646685!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0168667598963037!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.017164637197907!GO:0015002;heme-copper terminal oxidase activity;0.017164637197907!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.017164637197907!GO:0004129;cytochrome-c oxidase activity;0.017164637197907!GO:0008538;proteasome activator activity;0.0175930785291614!GO:0043596;nuclear replication fork;0.0175982001893!GO:0051101;regulation of DNA binding;0.0178756859434715!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182784055809712!GO:0051539;4 iron, 4 sulfur cluster binding;0.018554423984992!GO:0010468;regulation of gene expression;0.0189279232452717!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0190327169302349!GO:0030027;lamellipodium;0.0192514698339026!GO:0032508;DNA duplex unwinding;0.0192649077617779!GO:0032392;DNA geometric change;0.0192649077617779!GO:0000086;G2/M transition of mitotic cell cycle;0.0194313586277898!GO:0004527;exonuclease activity;0.0197330159043047!GO:0005637;nuclear inner membrane;0.0202384039697591!GO:0006497;protein amino acid lipidation;0.0203388905374899!GO:0044262;cellular carbohydrate metabolic process;0.0206769533129384!GO:0006144;purine base metabolic process;0.0207208865190602!GO:0005669;transcription factor TFIID complex;0.0208336003475507!GO:0006289;nucleotide-excision repair;0.021050643898554!GO:0006892;post-Golgi vesicle-mediated transport;0.0216751105512744!GO:0006284;base-excision repair;0.0218043334363003!GO:0000228;nuclear chromosome;0.0221757685449769!GO:0001889;liver development;0.0224509514321305!GO:0006338;chromatin remodeling;0.0234513368468396!GO:0043189;H4/H2A histone acetyltransferase complex;0.0234961358259294!GO:0030658;transport vesicle membrane;0.0237052977946587!GO:0008017;microtubule binding;0.0246136199760146!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0247880086449311!GO:0007040;lysosome organization and biogenesis;0.0249273544451117!GO:0030131;clathrin adaptor complex;0.0251695618125203!GO:0006376;mRNA splice site selection;0.0255207155912277!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255207155912277!GO:0007034;vacuolar transport;0.0258833690350154!GO:0051098;regulation of binding;0.026583855443892!GO:0031625;ubiquitin protein ligase binding;0.0268635922476186!GO:0045936;negative regulation of phosphate metabolic process;0.0269814211480511!GO:0001836;release of cytochrome c from mitochondria;0.0272448732478301!GO:0005774;vacuolar membrane;0.0272568256650741!GO:0030659;cytoplasmic vesicle membrane;0.0274998296160506!GO:0047485;protein N-terminus binding;0.0280424935917441!GO:0006672;ceramide metabolic process;0.0290559500498121!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0292664513594668!GO:0009119;ribonucleoside metabolic process;0.0292948900932027!GO:0006643;membrane lipid metabolic process;0.0296115628069384!GO:0043154;negative regulation of caspase activity;0.03008377587989!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.03008377587989!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0302296909840899!GO:0030125;clathrin vesicle coat;0.0303860822410432!GO:0030665;clathrin coated vesicle membrane;0.0303860822410432!GO:0004197;cysteine-type endopeptidase activity;0.0305505538156896!GO:0006779;porphyrin biosynthetic process;0.0305505538156896!GO:0033014;tetrapyrrole biosynthetic process;0.0305505538156896!GO:0000178;exosome (RNase complex);0.0308177964738482!GO:0009889;regulation of biosynthetic process;0.0309748752740328!GO:0042982;amyloid precursor protein metabolic process;0.0309748752740328!GO:0006740;NADPH regeneration;0.0309879696338287!GO:0006098;pentose-phosphate shunt;0.0309879696338287!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0317572288613013!GO:0055083;monovalent inorganic anion homeostasis;0.0317572288613013!GO:0055064;chloride ion homeostasis;0.0317572288613013!GO:0030644;cellular chloride ion homeostasis;0.0317572288613013!GO:0006607;NLS-bearing substrate import into nucleus;0.0319042120283121!GO:0032984;macromolecular complex disassembly;0.0319060699536466!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0328596783293851!GO:0032940;secretion by cell;0.033143129948751!GO:0006400;tRNA modification;0.0334207691416353!GO:0006268;DNA unwinding during replication;0.0341567938952151!GO:0040029;regulation of gene expression, epigenetic;0.0344080639441562!GO:0000118;histone deacetylase complex;0.0344318139041058!GO:0009451;RNA modification;0.034531769853822!GO:0033673;negative regulation of kinase activity;0.0346621625516644!GO:0006469;negative regulation of protein kinase activity;0.0346621625516644!GO:0006541;glutamine metabolic process;0.0351130566294961!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0353673127022835!GO:0012506;vesicle membrane;0.0357396757328648!GO:0035267;NuA4 histone acetyltransferase complex;0.0369230552982869!GO:0005862;muscle thin filament tropomyosin;0.0371416954161957!GO:0031371;ubiquitin conjugating enzyme complex;0.0372623158881415!GO:0004177;aminopeptidase activity;0.0375220122122747!GO:0030029;actin filament-based process;0.0375220122122747!GO:0008408;3'-5' exonuclease activity;0.0380772546131258!GO:0044433;cytoplasmic vesicle part;0.0382274196320607!GO:0043130;ubiquitin binding;0.038372319653472!GO:0032182;small conjugating protein binding;0.038372319653472!GO:0007021;tubulin folding;0.0384462876546202!GO:0017166;vinculin binding;0.0386221534074329!GO:0022411;cellular component disassembly;0.0393553998290241!GO:0009083;branched chain family amino acid catabolic process;0.0397676471426531!GO:0046982;protein heterodimerization activity;0.0400783957287946!GO:0031901;early endosome membrane;0.040298770722693!GO:0004532;exoribonuclease activity;0.0406144284911398!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0406144284911398!GO:0008426;protein kinase C inhibitor activity;0.0409114876507346!GO:0030660;Golgi-associated vesicle membrane;0.0411028587775988!GO:0030032;lamellipodium biogenesis;0.0412540255912298!GO:0009303;rRNA transcription;0.041279108013436!GO:0042158;lipoprotein biosynthetic process;0.0415675107099891!GO:0008652;amino acid biosynthetic process;0.0419321610136201!GO:0008320;protein transmembrane transporter activity;0.0419321610136201!GO:0043624;cellular protein complex disassembly;0.0421427005403054!GO:0022884;macromolecule transmembrane transporter activity;0.0421427005403054!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0421427005403054!GO:0009967;positive regulation of signal transduction;0.0421847841114519!GO:0032259;methylation;0.0421847841114519!GO:0030508;thiol-disulfide exchange intermediate activity;0.0422102389643942!GO:0006778;porphyrin metabolic process;0.0422859399606318!GO:0033013;tetrapyrrole metabolic process;0.0422859399606318!GO:0008097;5S rRNA binding;0.0423116298670187!GO:0006644;phospholipid metabolic process;0.042393233799!GO:0004003;ATP-dependent DNA helicase activity;0.042594192203033!GO:0016408;C-acyltransferase activity;0.0428089481313865!GO:0030911;TPR domain binding;0.0433515495610998!GO:0050435;beta-amyloid metabolic process;0.0433835106797559!GO:0016860;intramolecular oxidoreductase activity;0.0443228442710353!GO:0043631;RNA polyadenylation;0.04492322349815!GO:0046519;sphingoid metabolic process;0.0449699512795864!GO:0017134;fibroblast growth factor binding;0.0449773969452124!GO:0003725;double-stranded RNA binding;0.0452260104958066!GO:0003756;protein disulfide isomerase activity;0.0452369811504146!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0452369811504146!GO:0005784;translocon complex;0.0460081189734283!GO:0007033;vacuole organization and biogenesis;0.0469644321422559!GO:0009893;positive regulation of metabolic process;0.0470939662039909!GO:0046966;thyroid hormone receptor binding;0.0491579946785902!GO:0043241;protein complex disassembly;0.0495704470030683
|sample_id=10614
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=bHLH_family:1.98943527585;FOXM1:1.78738261314;BPTF:1.22102914707;PPARG:1.20865318948;ELK1,4_GABP{A,B1}:1.15919530406;TEF:1.06581687462;UFEwm:1.0409697915;RBPJ:0.990770183954;AIRE:0.955792925584;TBX4,5:0.931028809271;SNAI1..3:0.918776646226;TP53:0.867706145968;HSF1,2:0.847875626735;HOX{A6,A7,B6,B7}:0.778339765277;SP1:0.728701207614;ZEB1:0.717005757693;GCM1,2:0.714733158849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.586976416793;ZNF143:0.536468727551;ZBTB16:0.530066173381;IRF7:0.528714639802;ZNF148:0.512830195938;MYOD1:0.488856304459;ARID5B:0.481947212111;IRF1,2:0.477412191836;TBP:0.466898630356;RXR{A,B,G}:0.438003021885;POU6F1:0.418102650262;HOXA9_MEIS1:0.400516318735;ONECUT1,2:0.393182585203;IKZF2:0.387526553083;HES1:0.355826521261;TEAD1:0.348798985136;CDC5L:0.340836186694;EGR1..3:0.31563215683;NKX2-1,4:0.30275267797;TFAP2{A,C}:0.283893705718;E2F1..5:0.255785831026;PAX8:0.250993399711;CDX1,2,4:0.239432020173;IKZF1:0.233571809427;FOXQ1:0.232057911659;ZNF423:0.220307511104;TFAP2B:0.188619552388;GFI1:0.17239292156;PAX2:0.167601270485;ZNF384:0.159566731729;SPZ1:0.158953210003;RFX1:0.142892476891;GTF2A1,2:0.124488069792;MTF1:0.118299258996;XCPE1{core}:0.108885550288;LMO2:0.101775209533;HOX{A4,D4}:0.0972319181412;RREB1:0.0895140174214;EVI1:0.0888533741372;NFY{A,B,C}:0.0726401597007;YY1:0.0667134156744;FOX{D1,D2}:0.0640947394499;TLX1..3_NFIC{dimer}:0.0514983594194;SOX5:0.0504765928622;MED-1{core}:0.0362594342617;ATF4:0.0315321532756;ESR1:0.029221442197;ALX1:0.0276084804007;GATA4:0.00503727166615;NR5A1,2:-0.00869442045471;TFDP1:-0.0406832799893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0407474030041;RORA:-0.0431192100346;NRF1:-0.0605454100639;HIF1A:-0.0616932220067;ZIC1..3:-0.0626221736363;MYBL2:-0.0653897856758;ZBTB6:-0.0690198385521;REST:-0.0737451642429;HNF1A:-0.0776757592836;HNF4A_NR2F1,2:-0.0869107751916;RXRA_VDR{dimer}:-0.10516221742;NKX3-1:-0.108502722968;ESRRA:-0.108775508397;GLI1..3:-0.1115663927;MTE{core}:-0.129943017568;RFX2..5_RFXANK_RFXAP:-0.175647905226;AHR_ARNT_ARNT2:-0.187648043132;EP300:-0.189832461578;NR1H4:-0.198144296551;PAX5:-0.198858301269;PITX1..3:-0.201527061448;POU2F1..3:-0.204080169424;TOPORS:-0.204746401967;FOXN1:-0.210354192564;FOXP1:-0.217889301854;FOS_FOS{B,L1}_JUN{B,D}:-0.222025527745;BACH2:-0.225422778834;ZFP161:-0.23367902796;HMX1:-0.237289415103;STAT1,3:-0.241169575967;NR6A1:-0.241911792071;SOX2:-0.250731424322;TFCP2:-0.255926068681;POU1F1:-0.257880408195;SMAD1..7,9:-0.27748966008;HLF:-0.27919739495;ALX4:-0.284970849387;SOX{8,9,10}:-0.288166125991;NFE2L2:-0.301784082768;HIC1:-0.31081270738;NFIL3:-0.328224841802;NKX6-1,2:-0.329083356348;FOSL2:-0.33524955415;NFE2L1:-0.339446677953;NHLH1,2:-0.352380916584;KLF4:-0.353810537718;CEBPA,B_DDIT3:-0.359525375118;PAX3,7:-0.374368351391;PRRX1,2:-0.375433992045;SOX17:-0.377431822072;GTF2I:-0.389530181757;LHX3,4:-0.389700929534;NFKB1_REL_RELA:-0.391928522431;CUX2:-0.409425898112;MEF2{A,B,C,D}:-0.420341669771;NKX2-3_NKX2-5:-0.422163650208;PAX4:-0.431268991412;EBF1:-0.434900485871;OCT4_SOX2{dimer}:-0.441509533424;ATF5_CREB3:-0.44318779552;AR:-0.44627733228;NKX3-2:-0.447517907681;FOX{I1,J2}:-0.449277087668;ELF1,2,4:-0.451636200822;FOX{F1,F2,J1}:-0.454922856243;MYB:-0.456844744184;ADNP_IRX_SIX_ZHX:-0.463718408353;SPI1:-0.464394949425;STAT2,4,6:-0.467494579329;PRDM1:-0.468567758834;FOXD3:-0.475404788331;NFIX:-0.480599600625;HOX{A5,B5}:-0.481621855165;PDX1:-0.487928844622;FOXA2:-0.505611774583;SREBF1,2:-0.505632364864;PATZ1:-0.520087144957;BREu{core}:-0.520444227492;FOXL1:-0.520475745998;NKX2-2,8:-0.536138070561;MAZ:-0.538531081141;MYFfamily:-0.544783161207;SPIB:-0.586151698725;ATF2:-0.593559789293;FOXP3:-0.595681411991;NFE2:-0.597291801755;TFAP4:-0.597508779242;GFI1B:-0.614699883114;HMGA1,2:-0.624156754357;FOXO1,3,4:-0.633248582949;NR3C1:-0.649928367143;EN1,2:-0.657530263555;GATA6:-0.657621778994;RUNX1..3:-0.66380748252;TLX2:-0.697124377251;POU5F1:-0.713172136687;LEF1_TCF7_TCF7L1,2:-0.744551124128;MZF1:-0.772941828891;PAX1,9:-0.783590285545;XBP1:-0.785388251705;JUN:-0.797615893641;STAT5{A,B}:-0.828087121237;CREB1:-0.83941416578;T:-0.848391486712;ETS1,2:-0.848505898431;TAL1_TCF{3,4,12}:-0.872216031173;ATF6:-0.887927360623;CRX:-0.892655294227;SRF:-1.00603547173;MAFB:-1.01622454701;PBX1:-1.02526586264;VSX1,2:-1.03040096452;POU3F1..4:-1.04090452812;GZF1:-1.08558500338;NANOG{mouse}:-1.12528751909;NFATC1..3:-1.14924981448;TGIF1:-1.17169069045;PAX6:-1.19411191806;DBP:-1.29097786669;DMAP1_NCOR{1,2}_SMARC:-1.32819253541;NANOG:-1.36323848812;HAND1,2:-1.52665476114;ZNF238:-1.58267125966;HBP1_HMGB_SSRP1_UBTF:-2.26861890912
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10614-108G2;search_select_hide=table117:FF:10614-108G2
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:gastric adenocarcinoma cell line:MKN1
Species:Human (Homo sapiens)
Library ID:CNhs11737
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexmale
age72
cell typeunclassifiable
cell lineMKN1
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005958
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11737 CAGE DRX007890 DRR008762
Accession ID Hg19

Library idBAMCTSS
CNhs11737 DRZ000187 DRZ001572
Accession ID Hg38

Library idBAMCTSS
CNhs11737 DRZ011537 DRZ012922
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.259
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.699
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0515
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.188
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.278
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0596
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.00802
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.38
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.146
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.283
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.235
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0624
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0791
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0791
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0244
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.239
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.204
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0791
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.204
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.146
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11737

Jaspar motifP-value
MA0002.20.0628
MA0003.10.809
MA0004.10.0569
MA0006.10.82
MA0007.10.889
MA0009.10.462
MA0014.10.153
MA0017.10.551
MA0018.20.0874
MA0019.10.129
MA0024.10.321
MA0025.10.495
MA0027.10.618
MA0028.16.64954e-7
MA0029.10.948
MA0030.10.987
MA0031.10.992
MA0035.20.272
MA0038.10.0794
MA0039.20.00691
MA0040.10.135
MA0041.10.823
MA0042.10.623
MA0043.10.00354
MA0046.10.222
MA0047.20.506
MA0048.10.775
MA0050.10.103
MA0051.10.00454
MA0052.10.132
MA0055.10.0842
MA0057.10.161
MA0058.10.19
MA0059.10.0956
MA0060.10.116
MA0061.17.19524e-4
MA0062.23.71779e-4
MA0065.20.63
MA0066.10.447
MA0067.10.0216
MA0068.10.0083
MA0069.10.931
MA0070.10.864
MA0071.10.592
MA0072.10.593
MA0073.10.936
MA0074.10.766
MA0076.12.88232e-7
MA0077.10.335
MA0078.10.857
MA0079.20.195
MA0080.21.49539e-10
MA0081.10.0155
MA0083.10.00646
MA0084.10.27
MA0087.10.204
MA0088.10.562
MA0090.10.104
MA0091.10.0645
MA0092.10.293
MA0093.10.0569
MA0099.25.25805e-7
MA0100.10.355
MA0101.10.00345
MA0102.20.0115
MA0103.14.99416e-5
MA0104.20.124
MA0105.10.015
MA0106.10.39
MA0107.17.514e-5
MA0108.20.00785
MA0111.10.456
MA0112.20.452
MA0113.10.251
MA0114.10.43
MA0115.10.375
MA0116.10.0288
MA0117.10.0198
MA0119.10.564
MA0122.10.608
MA0124.10.0397
MA0125.10.0906
MA0131.10.531
MA0135.10.321
MA0136.15.45252e-7
MA0137.20.565
MA0138.20.424
MA0139.10.0457
MA0140.10.74
MA0141.10.921
MA0142.10.311
MA0143.10.704
MA0144.10.346
MA0145.10.305
MA0146.10.0318
MA0147.10.00777
MA0148.10.994
MA0149.10.358
MA0150.10.0124
MA0152.10.989
MA0153.10.973
MA0154.10.00655
MA0155.10.898
MA0156.10.00335
MA0157.10.576
MA0159.10.0121
MA0160.10.999
MA0162.10.953
MA0163.10.282
MA0164.10.374
MA0258.10.939
MA0259.10.00523



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11737

Novel motifP-value
10.968
100.74
1000.186
1010.134
1020.52
1030.555
1040.883
1050.59
1060.586
1070.175
1080.272
1090.0464
110.274
1100.437
1110.315
1120.351
1139.21012e-5
1140.358
1150.114
1160.627
1170.398
1180.289
1190.509
120.118
1200.358
1210.937
1220.783
1230.0173
1240.0534
1250.11
1260.302
1270.49
1280.0124
1290.266
130.227
1300.533
1310.0243
1320.326
1330.255
1340.143
1350.0619
1360.00684
1370.00738
1380.432
1390.828
140.127
1400.533
1410.639
1420.562
1430.422
1440.922
1450.142
1460.418
1470.992
1480.478
1490.561
150.52
1500.441
1510.635
1520.0368
1530.0506
1540.31
1550.219
1560.754
1570.854
1580.333
1590.123
160.72
1600.597
1610.372
1620.577
1630.807
1640.732
1650.837
1660.432
1670.519
1680.961
1690.156
170.934
180.984
190.406
20.471
200.486
210.343
220.976
230.18
240.595
250.951
260.331
270.521
280.718
290.0171
30.406
300.944
310.276
320.201
330.235
340.207
350.133
360.146
370.0469
380.888
390.675
40.523
400.885
410.015
420.359
430.458
440.0549
450.87
460.545
470.979
480.877
490.303
50.253
500.977
510.847
520.169
530.0879
540.604
550.0873
560.973
570.7
580.493
590.467
60.425
600.523
610.347
620.634
630.772
640.809
650.989
660.34
670.953
680.534
690.235
70.69
700.648
710.506
720.364
730.00622
740.271
750.0782
760.0936
770.743
780.654
790.981
80.541
800.113
810.219
820.722
830.453
840.112
850.442
860.078
870.811
880.947
890.247
90.233
900.124
910.184
920.0862
930.53
940.138
950.4
960.424
970.742
980.399
990.394



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11737


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0102384 (MKN-1 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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